Previous Article | Next Article 
Journal of Virology, January 2000, p. 363-370, Vol. 74, No. 1
0022-538X/0/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Simplified Strategy for Detection of Recombinant
Human Immunodeficiency Virus Type 1 Group M Isolates by
gag/env Heteroduplex Mobility Assay
Leo
Heyndrickx,1
Wouter
Janssens,1,2,*
Léopold
Zekeng,3
Rosemary
Musonda,4
Séverin
Anagonou,5
Gert
Van der
Auwera,1
Sandra
Coppens,1
Katleen
Vereecken,1
Ko
De
Witte,1
Rian
Van
Rampelbergh,1
Maina
Kahindo,6
Linda
Morison,7
Francine E.
McCutchan,8
Jean K.
Carr,8
Jan
Albert,9
Max
Essex,10
Jaap
Goudsmit,11
Birgitta
Asjö,12
Mika
Salminen,13
Anne
Buvé,1
Study Group on
Heterogeneity of HIV Epidemics in African Cities,
and
Guido
van der
Groen1
Department of Microbiology, Institute of Tropical Medicine,
Antwerp,1 and The Flanders
Interuniversity Institute for Biotechnology (VIB),
Zwijnaarde,2 Belgium; Laboratoire de
Santé Hygiène Mobile, Ministère de la Santé,
Yaoundé, Cameroon3; Tropical
Diseases Research Centre, Ndola, Zambia4;
Programme National de Lutte contre le SIDA, Cotonou,
Bénin5; National
AIDS/STD Control Programme, Nairobi,
Kenya6; London School of Hygiene & Tropical Medicine, Department of Infections and Tropical
Diseases, London, United Kingdom7; Henry
M. Jackson Foundation, Rockville, Maryland8;
Swedish Institute for Infectious Disease Control,
Karolinska Institute, Stockholm, Sweden9;
Harvard Institute and the Department of Immunology
and Infectious Diseases, Harvard School of Public Health, Boston,
Massachusetts10; Department of Human
Retrovirology, Amsterdam, The Netherlands11;
National Centre for Research in Virology, University of
Bergen, Bergen, Norway12; and
Department of Chronic Viral Infections, National
Public Health Institute, Helsinki, Finland13
Received 10 May 1999/Accepted 22 September 1999
 |
ABSTRACT |
We developed a heteroduplex mobility assay in the gag
gene (gag HMA) for the identification of group M
subtypes A to H. The assay covers the region coding for amino
acid 132 of p24 to amino acid 20 of p7 (according to human
immunodeficiency virus type 1 [HIV-1] ELI, 460 bp). The
gag HMA was compared with sequencing and phylogenetic
analysis of an evaluation panel of 79 HIV-1 group M isolates isolated
from infected individuals from different geographic regions.
Application of gag HMA in combination with env
HMA on 252 HIV-1- positive plasma samples from Bénin, Cameroon,
Kenya, and Zambia revealed a high prevalence of a variety of
intersubtype recombinants in Yaoundé, Cameroon (53.8%);
Kisumu, Kenya (26.8%); and Cotonou, Bénin (41%); no
recombinants were identified among the samples from Ndola, Zambia. The
AGIbNG circulating recombinant form, as determined by
gag HMA, was found to be the most common intersubtype
recombinant in Yaoundé (39.4%) and Cotonou (38.5%). Using a
one-tube reverse transcriptase PCR protocol, this gag HMA
in combination with env HMA is a useful tool for
rapidly monitoring the prevalence of the various genetic subtypes as
well as of recombinants of HIV-1. Moreover, this technology can easily
be applied in laboratories in developing countries.
 |
INTRODUCTION |
The Human immunodeficiency virus
type 1 (HIV-1) exhibits an extremely high genetic variation, which is
driven by a high error rate of the reverse transcriptase (RT), the
presence of viral RNA as a dimer (recombination occurs frequently
during reverse transcription) (29), the high turnover of
HIV-1 in vivo (14), and selective immune responses.
By genetic analyses, HIV strains collected from around the world have
been shown to have substantial diversity (19). Two types
have been characterized in humans: HIV-1, the predominant HIV type
throughout the world, and HIV-2, which is less widespread and still
primarily found in West Africa. Three different HIV-1 groups are
distinguished: group M (major), which is globally prevalent; group O
(outlier) (5); and group N (non-M/non-O) (27).
HIV-1 groups and subtypes are unevenly distributed throughout the world (2, 16, 17, 23). Over the years the definition of group M
subtypes has been adapted in the light of emerging recombinants. Representatives of different "pure" (nonrecombinant) subtypes A, B,
C, D, F, G, H, and J and circulating recombinant forms (CRFs) AECM240, AGIbNG, AGICY032, and
ABKal153, were proposed based on near-full-length genome
analysis, as determined by the HIV Sequence Database (HSB; J. K. Carr, B. T. Foley, T. Leitner, M. Salminen, B. Korber, and F. McCutchan [http://hiv-web.lanl.gov/]). These are needed as a
framework to identify new subtypes and intersubtype recombinants,
which are an important source of HIV-1 genetic variation. The most
prevalent CRFs are AECM240 and AGIbNG.
AECM240 is common in the Central African Republic,
Thailand, and other Asian countries (11). In Nigeria
AGIbNG recombinants (named after the first isolate from
Ibadan, Nigeria) were identified (4, 15, 22). Additional
AGIbNG-like full-length sequences were also obtained from
Djibouti (4) and Côte d'Ivoire (per HSB). Reanalysis of partial env sequences from Côte d'Ivoire
(9) and Cameroon (28), initially documented
as subtype A, indicates that strains of HIV-1 similar to
AGIbNG are the most common form of subtype A in Côte
d'Ivoire and Cameroon (per HSB and J. K. Carr, personal communication).
To date, there have been few systematic large-scale attempts to
characterize HIV isolates from different parts of the world. Thus, our
knowledge about the distribution of HIV strains in different populations and about changes in that distribution over time is rather
limited. env heteroduplex mobility assay (HMA) is much less cumbersome and less expensive than nucleic acid sequencing and
phylogenetic analysis (6, 7). Since there is a strong correlation between the subtyping result obtained by HMA and that obtained by sequencing and phylogenetic analysis (6, 13), HMA has been introduced by UNAIDS in several developing
countries as a tool for monitoring subtype distribution. Adding
gag HMA to env HMA would allow one to provide a
"minimum estimate" of the prevalence of the various genetic
subtypes as well as some of the recombinants of HIV-1.
 |
MATERIALS AND METHODS |
Reference panel.
A panel of 23 plasmids containing the
gag gene of HIV-1 strains belonging to group M subtypes A to
H was available (20). This panel was extended by adding
plasmids containing part of the gag gene of CA10 (CRF
AECM240), VI991 and VI997 (subtype H). Following evaluation
of this panel, gag HMA reference plasmids for subtype B
(PIC63 and PIC335) and subtype D (VI761 and PIC49) were added (Table
1).
Evaluation panel.
There were 10 supernatants from cultures
for which full-length HIV-1 sequences were available: subtypes A
(n = 6; SE6594, SE7253, SE7535, SE8131, SE8538, and
SE8891), AGIbNG (n = 1; SE7812), G
(n = 1; SE6165), and J (n = 2; SE9173
and SE9280) (per HSB). There were five supernatants from cultures for
which the gag/env subtype was determined by sequencing and
phylogenetic analysis: subtype F (n = 5; 93R26, 96R85,
96R95, 97R102, and 97R110) (E. Op de Coul, R. van den Burg, B. Asjö, A. Cupsa, R. Pascu, C. Usein, J. Goudsmit, and M. Cornelissen, unpublished data). There were 4 plasmids containing
full-length HIV-1 sequences of subtype C (n = 4;
96BW01, 96BW04, 96BW05, and 96BW15) (26); 13 plasmids containing (part of) the gag gene of subtypes A
(n = 7; K98, K7, K88, K112, K89, VI415, and VI32), D
(n = 3; UG274, UG270, and SE365), AECM240
(n = 1, CM240), and A/G (n = 2; CI20
and CI32) (20); and 11 peripheral blood mononuclear cell
cultures for which the gag/env subtypes were A/A
(n = 2; VI537 and VI1139), A/D (n = 1;
VI1308), B/B (n = 1; VI1663), B/ND (n = 2; PH136 and PH153), C/C (n = 2; ZM18 and ZM20),
AECM240 (n = 2; CM235 and CM243), and F/F
(n = 1; BZ126) (3, 20, 21). Plasma of 36 HIV-1 group M (A to H) infected patients, from different geographic regions, for which the gag/env subtype was determined by
sequencing and phylogeny, was also tested: subtypes A/A (n = 2; PIC349 and PIC382), A/D (n = 1; PIC25),
AECM240 (n = 4; PIC6, PIC807, PIC231, and
PIC1047), A/G (n = 2; PIC436 and VI1197), B/B
(n = 10; PIC63, PIC55, PIC135, PIC1626, PIC1852,
PIC271, PIC1622, PIC143, PIC335, and PIC1585), B/A (n = 1; PIC364), C/C (n = 5; VI 882, VI1044, VI1144, VI1233, and PIC146), D/D (n = 4; VI205,
VI761, PIC797, and PIC1018), D/F (n = 3; PIC49,
PIC179, and PIC885), F/F (n = 1; PIC132), G/A
(n = 1; PIC201), and H/H (n = 2; VI997
and PIC450).
Study subjects.
Between July 1997 and January 1998 serum
samples and corresponding data were collected from roughly 1,000 men
and 1,000 women, who were randomly selected from the general
population, as well as 300 commercial sex workers, in each of four
sub-Saharan African cities (Cotonou, Bénin [BJ]; Yaoundé,
Cameroon [CM]; Kisumu, Kenya [KE]; and Ndola, Zambia [ZM]). Among
the HIV-positive subjects, plasma samples were analyzed from 39 HIV-1-infected individuals from the general population; among
HIV-infected commercial sex workers from Cotonou, 66 were from
Yaoundé, 61 were from Ndola, and 86 were from Kisumu.
RNA extractions and RT-PCR.
RNA extractions were performed
as previously described (1). One-tube RT-PCR (Access RT-PCR;
Promega, Leiden, The Netherlands) was performed according to the
manufacturer's recommendations.
(i) gag one-tube RT-PCR.
The primers were H1G777
(5'-TCACCTAGAACTTTGAATGCATGGG-3') and H1P202
(5'-CTAATACTGTATCATCTGCTCCTGT-3'), and the cycle
protocol was 45 min at 48°C (cDNA reaction), followed by 2 min at
94°C and 40 cycles for 30, 30, and 90 s at, respectively, 94, 50, and 68°C; and 1 cycle for 7 min at 68°C. For nested PCR,
the primers were H1Gag1584 (5'-AAAGATGGATAATCCTGGG-3') and
g17 (5'-TCCACATTTCCAACAGCCCTTTTT-3'), and the cycling
conditions were 1 cycle for 2 min at 94°C; 35 cycles for 30, 30, and
60 s at, respectively, 94, 50, and 72°C; and 1 cycle for 7 min
at 72°C. A larger fragment (830 bp) containing the entire
gag HMA fragment was amplified by using H1G822
(5'-GCTTTCAGCCCAGAAGTAATACC-3') and H1GHMA1317
(5'-CCAAATTCTCCCTAAAAAATTAGCCT-3') during the nested PCR and
by using the same cycling conditions as for H1Gag1584 and g17.
(ii) env one-tube RT-PCR.
The primers ED5 and
ED12 (6) were used, and the cycle protocol was 45 min at
48°C (cDNA reaction), 1 cycle for 2 min at 94°C; 40 cycles for 30, 30, and 120 s at, respectively, 94, 55, and 68°C; and 1 cycle
for 7 min at 68°C. For nested PCR, the primers were ES7 and ES8
(6).
(iii) pol one-tube RT-PCR.
The primers H1P4235
(10) and H1P5155as (5'-CTCTGTGGCCCCTGGTCTTCT-3')
were used. The cycle protocol was 45 min at 48°C (cDNA reaction), followed by 2 min at 94°C and 40 cycles for 30, 30, and
90 s at, respectively, 94, 55, and 68°C; and 1 cycle of 7 min at
68°C. For nested PCR the primers H1P4327 (10) and
H1P5128as (5'-CTCTTTCCATCTGTCTTCTGCTA-3') were used, and the
cycling conditions were 1 cycle for 2 min at 94°C; 35 cycles for 30, 30, and 60 s at, respectively, 94, 50, and 72°C; and 1 cycle for
7 min at 72°C.
Sequence analysis.
Sequencing of both DNA strands was
performed by cycle sequencing and 5'-fluorescein isothiocyanate
(FITC)-labeled primers on an automated laser fluorescence sequencer
(Amersham Pharmacia Biotech, Roosendaal, The Netherlands).
Sequences were aligned with CLUSTAL W (30), and the
resulting alignments were refined manually with the dedicated
comparative sequence editor (8). The software package
TREECON was used for distance calculations (Jukes and Cantor),
tree construction (neighbor-joining method), and bootstrap analysis
(31). The HIV-1 gag nucleotide sequence data were
deposited in the EMBL, GenBank, and DDBJ nucleotide sequence databases
under the following accession numbers: AF184346 to AF184587.
Heteroduplex formation and mobility analysis.
HMA was
largely performed as described by Delwart et al. (6, 7).
Briefly, the following methodology was used. Heteroduplex molecules
were obtained by mixing 4.5 µl from two second-round PCRs and adding
1 µl of 10× annealing buffer (1 M NaCl, 100 mM Tris-HCl [pH 7.8],
20 mM EDTA). The DNA fragments were denaturated at 94°C for 2 min and
reannealed by rapid cooling on wet ice.
Electrophoresis was done on a 5% polyacrylamide gel (29:1
acrylamide:bisacrylamide) that included 20% urea in 1× TBE buffer
(88 mM Tris-borate, 89 mM boric acid, 2 mM EDTA) at 250 V for
2.5 h. Detection of heteroduplexes was done by staining with
ethidium
bromide and visualization under UV
light.
In order to better discriminate between subtype A, CRF
AE
CM240, and CRF AG
IbNG, the gel composition
was altered by adding
30% urea and extending the electrophoresis time
up to 3
h.
 |
RESULTS |
Design of gag HMA.
Based on sequences available
for HIV-1 group M subtypes A through H, primers were designed to
amplify a fragment of approximately 460 bp covering a gag
gene region coding for amino acid 132 of p24 to amino acid 20 of p7
(according to HIV-1 ELI; accession number KO3454). The experimental
conditions were mainly as described for env HMA (ED31-ED33)
(7), initially with a reference panel including 26 plasmids
containing the gag gene of HIV-1 group M subtypes A to H. The choice of different subtype references was guided by their
availability and by their phylogenetic classifications with respect to
subtype representatives in distinguished subtype clusters for the
gag HMA fragment analyzed (Table 1 and Fig. 1). Experimental conditions were obtained
whereby reference isolates could be amplified by PCR and unambiguously
subtyped by HMA. Altered experimental conditions relative to the gel
composition (30% urea instead of 20%) allowed better distinction
between gag subtype A, CRF AECM240, and CRF
AGIbNG.

View larger version (24K):
[in this window]
[in a new window]
|
FIG. 1.
Phylogenetic tree based on a gag gene region
(460 bp; nucleotides 1123 to 1589; according to HIV-1 ELI) encoding
amino acid 132 of p24 to amino acid 20 of p7. References of the
gag HMA panel are indicated in italic. A total of 2,000 bootstrap samples were analyzed. Bootstrap values are given in
percentages at the internodes if they exceed the 70% level. The
distance between two sequences is obtained by summing the lengths of
the connecting horizontal branches by using the scale on top. The tree
is rooted arbitrarily.
|
|
Evaluation of gag HMA.
An evaluation of
gag HMA was done on a reference panel of 79 genetically
confirmed HIV-1 group M isolates, isolated from individuals infected in
different geographic regions, with the following gag/env subtypes: A/A, n = 17; A/D, n = 2;
AGIbNG, n = 3; A/G, n = 2; AECM240, n = 7; B/B, n = 11; B/A, n = 1; B/ND, n = 2; C/C,
n = 11; D/D, n = 7; D/F, n = 3; F/F, n = 7; G/A, n = 1; G/G,
n = 1; H/H, n = 2; and J/J,
n = 2. For all of these isolates a positive PCR product
was obtained. As indicated by phylogenetic analysis of the
gag HMA references, two subtype D clusters were
distinguished, which together with subtype B form one cluster (Fig. 1).
Additional reference isolates were added to optimize subtype B (B/B,
PIC63; B/B, PIC335) and D (D/D, VI761; D/F, PIC49) differentiation
(Table 1). gag HMA was successful in determining the correct
genetic subtype of 76 of 79 isolates (96%). Strains that could not be classified due to an intersubtype migration pattern belonged to subtype
D (n = 1) and subtype J (n = 2). For
the latter subtype no references were included.
Validation of gag/env HMA.
gag HMA in
combination with env HMA was validated on HIV-1-positive
plasma samples from individuals who participated in the above-mentioned
population-based survey.
A positive
gag HMA PCR product was obtained for 242 of 252 (96%) of the analyzed plasma samples. The result obtained by
gag HMA was confirmed by sequencing and phylogenetic
analysis of the
gag HMA fragment. For the 10
gag
HMA fragment PCR-negative samples,
an overlapping
gag
fragment was amplified. These samples were
classified into subtypes A
(CM,
n = 1; KE,
n = 1; and BJ,
n =
5), C (KE,
n = 1), and D (KE,
n = 2) by sequencing and phylogenetic
analysis of the
gag HMA fragment. Of 242 samples, 6 could not
be classified
by
gag HMA. These samples belonged to subtypes A
(KE,
n = 1), C (ZM,
n = 1), D (KE,
n = 2), dual D+C (KE,
n = 1),
and U
(unclassified) (CM,
n = 1,
env subtype F)
based on sequencing
and phylogenetic analysis of the
gag HMA
fragments.
gag subtype
distribution results are presented in
Table
2.
A positive PCR product for the
env HMA ES7-ES8 fragment
(
6) was obtained for 238 of 252 (94.4%) of the analyzed
plasma
samples. For 13 of 14 PCR-negative samples a C2V3 coding
env fragment
could be amplified, sequenced, and
phylogenetically analyzed.
These samples were classified into subtypes
A (CM,
n = 5; KE,
n = 2), D (KE,
n = 2), AE
CM240 (CM,
n = 1), F (CM,
n = 1), and
U (KE,
n = 2,
gag subtype A) (Table
2). For the remaining sample
no
env fragment could be amplified (
gag subtype
G). Of 238 samples,
29 could not be unambiguously subtyped by
env HMA. These samples
were classified into subtypes A (CM,
n = 1; KE,
n = 5), C (KE,
n = 4; ZM,
n = 1), D (CM,
n = 4; KE,
n = 3), F (CM,
n = 1), G
(CM,
n = 3; KE,
n = 1), and U (ZM,
n = 1,
gag subtype C; CM,
n = 1,
gag subtype AG
IbNG; KE,
n = 1,
gag subtype A), as based on
sequencing and phylogenetic
analysis of the
env C2V3 coding region.
For three samples
evidence of dual infection was obtained by cloning
prior to subtyping
by HMA and/or sequencing and phylogenetic analysis
of the
env C2V3 coding region: dual A+C (ZM,
n = 1); dual A+D
(KE,
n = 2).
env subtype
distribution results are presented in
Table
3.
The HIV-1
gag and
env subtyping results from
samples collected in Zambia, Cameroon, Kenya, and Bénin are
presented in Table
4 and Fig.
2. Altogether, the frequency of HIV-1
intersubtype
recombinants in this study was 53.8% (35 of 65) in
Yaoundé, Cameroon;
41% (16 of 39) in Cotonou, Bénin;
26.8% (23 of 86) in Kisumu,
Kenya; and 0% in Ndola, Zambia.

View larger version (46K):
[in this window]
[in a new window]
|
FIG. 2.
Pie chart subtype representation for the four different
countries based on gag/env regions. The pie is subdivided
into pieces representing nonrecombinants (NR), recombinants (R), CRFs
plus other recombinants, and multiple infections (MI). A, subtype A and
AGIbNG could not be differentiated by env HMA.
|
|
Differentiation between subtype A, CRF AECM240, and CRF
AGIbNG.
CRFs AECM240 and
AGIbNG each consist of variants that are genetically
subtype A for the analyzed gag HMA fragment. Experimental gag HMA conditions as described for group M subtypes A to H
to some extent also allow differentiation between subtype A, CRF AECM240, and CRF AGIbNG (Fig.
3A). However this specific
differentiation is much clearer when analyzed under altered gel
conditions (30% urea) (Fig. 3B). In order to confirm correct
classification of potential CRF AGIbNG isolates, a
pol gene fragment of 14 randomly chosen potential CRF
AGIbNG variants (CM, n = 8; BJ,
n = 6) was PCR amplified, sequenced, and
phylogenetically analyzed (Fig. 4).
Clustering of these variants with CRF AGIbNG
representatives for this pol fragment supports the
classification as CRF AGIbNG variants (4).

View larger version (84K):
[in this window]
[in a new window]
|
FIG. 3.
HMAs of HIV-1 subtype A, AECM240, and
AGIbNG gag sequences on a 5% polyacrylamide gel
containing 20% urea (A) and 30% urea (B). Isolate numbers are
according to the references in Table 1.
|
|

View larger version (24K):
[in this window]
[in a new window]
|
FIG. 4.
Phylogenetic tree based on a pol gene region
(750 bp; nucleotides 4377 to 5128; according to HIV-1 ELI) encoding
integrase. Samples newly identified in this study are indicated
in italic. A total of 2,000 bootstrap samples were analyzed. Bootstrap
values are given in percentages at the internodes if they exceed the
70% level. The distance between two sequences is obtained by
summing the lengths of the connecting horizontal branches by using the
scale at the top. The tree is rooted arbitrarily.
|
|
 |
DISCUSSION |
The development of an efficacious vaccine against HIV-1 still
remains one of the biggest challenges in the worldwide fight against
HIV and AIDS. Major obstacles to vaccine development include the huge
HIV variability and the fact that we do not know the correlates of
protection in a vaccinated individual. The principle still holds that a
vaccine should contain immunogenic characteristics of the prevalent
HIV-1 subtype(s) circulating in a geographic region. We may need
cocktails of different immunogens that are representative of each
genotype and phenotype, in combination, or cocktails that are easily
adapted to different geographic regions or over time. Up-to-date
information on circulating HIV strains may thus be of crucial
importance. Although sequencing remains the most accurate approach for
characterizing virus genomes, this method is time-consuming and
requires a considerable investment in terms of equipment and reagents,
as well as a lot of experience. This precludes the use of sequencing
for monitoring the distribution of HIV strains in populations.
env HMA has been evaluated as a reliable alternative
subtyping method compared to sequencing and phylogenetic analysis
(6, 13) and is sensitive, cost-effective, and applicable on
a relatively large scale. It has already been successfully introduced
by UNAIDS in several developing countries. Since intersubtype
recombination is an important source of HIV-1 genetic variation, there
was a need to extend HMA subtyping to cover two distinct HIV-1 regions:
gag and env.
A reference panel was assembled based on available plasmids containing
gag gene inserts and then evaluated with a panel of 79 genetically characterized samples. Two subtype B and two subtype D
references were added to the reference panel in order to optimize differentiation among subtype B and D variants. The gag HMA
subtype results correlated well with sequence and phylogenetic
analysis, except for one subtype D isolate that was unclassified by
gag HMA and two subtype J samples for which no
representatives were included in the reference panel. Experimental
conditions were found to distinguish between subtype A, CRF
AECM240, and CRF AGIbNG variants in subtype A,
which was supported by sequencing and phylogenetic analysis of a
pol gene fragment (4). The latter conditions only
improve differentiation among subtype A, CRF AECM240, and CRF AGIbNG and cannot be applied to subtyping other group M
subtype strains. Subtyping by gag HMA correlated with
sequencing and phylogenetic analysis of the same fragment.
The combination of gag and env subtyping results
obtained on HIV-1-positive plasma samples from Bénin, Cameroon,
Zambia, and Kenya revealed a high prevalence of a variety of
intersubtype recombinants in Cameroon (53.8%), Kenya (26.8%), and
Bénin (41%). These data indicate the relevance of subtyping two
different gene fragments. Contrary to the lack of recombinants in
Zambia, a high frequency of intersubtype recombinants documented in
Cameroon, Kenya, and Bénin correlates with the distribution of
multiple subtypes, as previously documented for Cameroon (25,
28), Kenya (24; E. M. Songok, H. Ichimura, P. M. Tukei, K. Kakimoto, P. Orege, N. Sakagami, and
T. Kurimura, Abstr. 12th World AIDS Conf., abstr. 11188, 1998), and
Bénin (12). AGIbNG/F and
AGIbNG/G recombinants were identified in Cameroon and
Bénin, respectively. The AGIbNG recombinant subtype,
as determined by gag HMA, is prevalent in Yaoundé,
Cameroon (39.4%), and Cotonou, Bénin (38.5%), and can therefore
be considered as an epidemiologically important CRF. Reanalysis of
previously documented env sequences encoding the region C2V3
to the start of gp41 (900 bp) of subtype A samples from Côte
d'Ivoire (18) and Cameroon (25), in combination with gag HMA, indicates that CRF AGIbNG strains
were already prevalent in these countries (10 of 13 and 9 of 12, respectively) in the early 1990s. Furthermore, one isolate from
Côte d'Ivoire was identified as an env
AGIbNG/gag A recombinant (data not shown). These
results suggest that dual infection with different subtypes of HIV-1
may occur frequently in geographic regions where multiple HIV-1
subtypes cocirculate, giving rise to HIV-1 intersubtype recombinants
that can be transmitted and spread in the population.
A different classification based on gag and env
HMA obtained from the same sample is a strong indication for
intersubtype recombination. However, no assumptions can be made
regarding genome regions other than those analyzed in gag
and env HMA. An isolate that is classified in the same
subtype by gag and env HMA can still be an
intersubtype recombinant. These results may thus have to be considered
minimal estimates of the prevalence of recombinant strains. In the
light of recent efforts to document full-length sequences of "pure"
subtype and CRF references, the proposed reference panel is subject to
improvement. Knowledge of subtype variants circulating in a particular
geographic region may be used to add or replace subtype references for
those variants most frequently encountered. The described
gag HMA reference panel so far has allowed the subtyping of
genetically confirmed HIV-1 group M gag subtype A to H
strains and CRFs AECM240 and AGIbNG isolated
from individuals infected in the following different geographic
regions: subtype A and/or AGIbNG, Côte d'Ivoire,
Bénin, Kenya, Cameroon, Democratic Republic Congo, and Zambia; B,
Belgium and the Phillipines; C, Kenya, Djibouti, Uganda,
Democratic Republic Congo, Zambia, and Botswana; D, Kenya,
Cameroon, and Democratic Republic Congo; AECM240, Cameroon
and Thailand; F, Romania, Democratic Republic Congo, and Cameroon; G,
Russia, Gabon, Bénin, and Cameroon; and H, Democratic Republic
Congo and Gabon.
We believe that the development of a gag HMA makes an
important contribution to subtyping strategies in surveillance, in
studies of biological characteristics of strains, and in surveys for
the preparation of vaccine trials. Transfer of HIV-1 gag/env
HMA to the developing countries may contribute to obtaining a more
accurate estimate of the real prevalence of HIV-1 subtypes and
intersubtype recombinants in those parts of the world where the
technology for sequencing is not readily available. This will aid in
the development and evaluation of HIV vaccines more suitable for use in
developing countries.
 |
ACKNOWLEDGMENTS |
This work was supported by the Fonds voor Wetenschappelijk
Onderzoek, Brussels, Belgium (grants 3-3301-96 and G.0134.97); the
Flanders Interuniversity Institute for Biotechnology (VIB), Zwijnaarde, Belgium; the EC (grant IC18-CT97-02476); the Human Science Foundation (Tokyo, Japan); the United Kingdom Department for
International Development (DFID, research project RD420); and UNAIDS.
The work of the Study Group on Heterogeneity of HIV Epidemics in
African Cities was supported by UNAIDS; the Agence Nationale de
Recherche sur le SIDA/Ministère de la Coopération Française; DGXII of the EC (contract number ERBIC 18CT96-0109); SIDACTION (France); the Belgian Development Cooperation, Nairobi, Kenya; and the Fonds voor Wetenschappelijk Onderzoek (grant number K.V.E. 182, 1997), Brussels, Belgium. Linda Morison of the London School of Tropical Health and Medicine was supported by the British Medical Research Council.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Microbiology, Institute of Tropical Medicine, Nationalestraat 155, 2000 Antwerp, Belgium. Phone: 32-3-247-63-28. Fax: 32-3-247-63-33. E-mail:
wjanssens{at}itg.be.
Members of the Study Group on Heterogeneity of HIV Epidemics in
African Cities include A. Buvé (coordinator), M. Laga, E. Van
Dyck, W. Janssens, and L. Heyndrickx (Institute of Tropical Medicine,
Antwerp, Belgium); M. Caraël (UNAIDS); S. Anagonou (Programme
National de Lutte contre le SIDA, Bénin); M. Laourou (Institut
National de Statistiques et d'Analyses Economiques, Bénin); L. Kanhonou (Centre de Recherche en Reproduction Humaine et en
Démographie, Bénin); L. Zekeng (Laboratoire de Santé Hygiène Mobile, Cameroon); E. Akam and M. de Loenzien (Institut de Formation et de Recherche en Démographiques, Cameroon);
S.-C. Abega (Université Catholique d'Afrique Centrale,
Cameroon); M. Kahindo (formerly National AIDS/STD Control
Programme, Kenya); J. Chege and N. Rutenberg (The
Population Council, Nairobi); V. Kimani (Department of Community
Health, University of Nairobi); R. Musonda, T. Sukwa, and F. Kaona
(Tropical Diseases Research Centre, Zambia); B. Auvert and E. Lagarde
(INSERM U88, Paris, France); N. J. Robinson (formerly INSERM
U88, Paris, France); B. Ferry and N. Lydié (Centre Français
sur la Population et le Développement, Paris, France); and R. Hayes, L. Morison, H. Weiss, and J. Glynn (London School of Hygiene and
Tropical Medicine, London, United Kingdom).
 |
REFERENCES |
| 1.
|
Boom, R.,
C. J. A. Sol,
M. M. M. Salimans,
C. L. Jansen,
P. M. E. Wertheim-van Dillen, and J. van der Noordaa.
1990.
Rapid and simple method for purification of nucleic acids.
J. Clin. Microbiol.
28:495-503[Abstract/Free Full Text].
|
| 2.
|
Burke, D. S., and F. E. McCutchan.
1997.
Global distribution of human immunodeficiency virus-1 clades, p. 119-121.
In
V. T. De Vita, Jr., S. Hellman, and S. A. Rosenberg (ed.), AIDS: biology, diagnosis, treatment and prevention, 4th ed. Lippincott-Raven, Philadelphia, Pa
|
| 3.
|
Carr, J. K.,
M. O. Salminen,
C. Koch,
D. Gotte,
A. W. Artenstein,
P. A. Hegerich,
D. St. Louis,
D. S. Burke, and F. E. McCutchan.
1996.
Full-length sequence and mosaic structure of a human immunodeficiency virus type 1 from Thailand.
J. Virol.
70:5935-5943[Abstract].
|
| 4.
|
Carr, J. K.,
M. O. Salminen,
J. Albert,
E. Sanders-Buell,
D. Gotte,
D. L. Birx, and F. McCutchan.
1998.
Full genome sequences of human immunodeficiency virus type 1 subtypes G and A/G intersubtype recombinants.
Virology
247:22-31[CrossRef][Medline].
|
| 5.
|
Charneau, P.,
A. M. Borman,
C. Quillant,
D. Guétard,
S. Chamaret,
J. Cohen,
G. Rémy,
L. Montagnier, and F. Clavel.
1994.
Isolation and envelope sequence of a highly divergent HIV-1 isolate: definition of a new HIV-1 group.
Virology
205:247-253[CrossRef][Medline].
|
| 6.
|
Delwart, E. L.,
E. G. Sphaer,
J. Louwagie,
F. E. McCutchan,
M. Grez,
H. Rübsamen-Waigmann, and J. I. Mullins.
1993.
Genetic relationships determined by a DNA heteroduplex mobility assay: analysis of HIV-1 genes.
Science
262:1257-1261[Abstract/Free Full Text].
|
| 7.
|
Delwart, E. L.,
M. P. Busch,
M. L. Kalish,
J. W. Mosley, and J. I. Mullins.
1995.
Rapid molecular epidemiology of human immunodeficiency virus transmission.
AIDS Res. Hum. Retrovir.
11:1081-1093[Medline].
|
| 8.
|
De Rijk, P., and R. De Wachter.
1993.
DCSE, an interactive tool for sequence alignment and secondary structure research.
Comput. Appl. Biosci.
9:735-740[Abstract/Free Full Text].
|
| 9.
|
Ellenberger, D. L.,
D. Pieniazek,
J. Nkengasong,
C.-C. Luo,
S. Devare,
C. Maurice,
M. Janini,
A. Ramos,
C. Fridlund,
D. J. Hu,
I.-M. Coulibaly,
E. Ekpini,
S. Z. Wiktor,
A. E. Greenberg,
G. Schochetman, and M. A. Rayfield.
1999.
Genetic analysis of human immunodeficiency virus in Abidjan, Ivory Coast reveals predominance of HIV-1 subtype A and introduction of subtype G.
AIDS Res. Hum. Retrovir.
15:3-9[CrossRef][Medline].
|
| 10.
|
Fransen, K.,
P. Zhong,
H. De Beenhouwer,
G. Carpels,
M. Peeters,
J. Louwagie,
W. Janssens,
P. Piot, and G. van der Groen.
1994.
Design and evaluation of new, highly sensitive and specific primers for polymerase chain reaction detection of HIV-1 infected primary lymphocytes.
Mol. Cell. Probes
8:317-322[CrossRef][Medline]. (Erratum, 9:373, 1995.)
|
| 11.
|
Gao, F.,
D. L. Robertson,
S. G. Morrison,
H. W. Hui,
S. Craig,
J. Decker,
P. N. Fultz,
M. Girard,
G. M. Shaw,
B. H. Hahn, and P. M. Sharp.
1996.
The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin.
J. Virol.
70:7013-7029[Abstract/Free Full Text].
|
| 12.
|
Heyndrickx, L.,
W. Janssens,
M. Alary,
K. Fransen,
K. Vereecken,
S. Coppens,
B. Willems,
N. Davo,
A. Guèdèmè,
E. Gabanizi,
J. Joly, and G. van der Groen.
1996.
Genetic variability of HIV-1 in Bénin.
AIDS Res. Hum. Retrovir.
12:1495-1497[Medline].
|
| 13.
|
Heyndrickx, L.,
W. Janssens,
S. Coppens,
K. Vereecken,
B. Willems,
K. Fransen,
R. Colebunders,
M. Vandenbruaene, and G. van der Groen.
1998.
HIV-1 C2V3 env diversity among Belgian individuals.
AIDS Res. Hum. Retrovir.
14:1291-1296[Medline].
|
| 14.
|
Ho, D. D.,
A. U. Neumann,
A. S. Perelson,
W. Chen,
J. M. Leonard, and M. Markowitz.
1995.
Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection.
Nature
373:123-126[CrossRef][Medline].
|
| 15.
|
Howard, T. M.,
D. O. Olaylele, and S. Rasheed.
1994.
Sequence analysis of the glycoprotein 120 coding region of a new HIV type 1 subtype A strain (HIV-1IbNg) from Nigeria.
AIDS Res. Hum. Retrovir.
10:1755-1757[Medline].
|
| 16.
|
Hu, D. J.,
T. J. Dondero,
M. A. Rayfield,
J. R. George,
G. Schochetman,
H. W. Jaffe,
C. C. Luo,
M. L. Kalish,
B. G. Weniger,
C. P. Pau,
C. A. Schable, and J. W. Curran.
1996.
The emerging genetic diversity of HIV the importance of global surveillance for diagnostics, research, and prevention.
J. Am. Med. Assoc.
275:210-216[Abstract/Free Full Text].
|
| 17.
|
Janssens, W.,
A. Buvé, and J. Nkengasong.
1997.
The puzzle of HIV-1 subtypes in Africa.
AIDS
11:705-712[CrossRef][Medline].
|
| 18.
|
Janssens, W.,
L. Heyndrickx,
Y. Van de Peer,
A. Bouckaert,
K. Fransen,
J. Motte,
G. M. Gershy-Damet,
M. Peeters,
P. Piot, and G. van der Groen.
1994.
Molecular phylogeny of part of the env-gene of HIV-1 isolated in Côte d'Ivoire.
AIDS
8:21-26[Medline].
|
| 19.
|
Korber, B.,
B. Hahn,
B. Foley,
J. W. Mellors,
T. Leitner,
G. Myers,
F. McCutchan, and C. Kuiken.
1997.
Human retroviruses and AIDS.
Los Alamos National Laboratory, Los Alamos, N.Mex
|
| 20.
|
Louwagie, J.,
F. E. McCutchan,
M. Peeters,
T. P. Brennan,
E. Sanders-Buell,
G. A. Eddy,
G. van der Groen,
K. Fransen,
G.-M. Gershy-Damet,
R. Deleys, and D. S. Burke.
1993.
Phylogenetic analysis of gag genes from 70 international HIV-1 isolates provides evidence for multiple genotypes.
AIDS
7:769-780[Medline].
|
| 21.
|
Louwagie, J.,
W. Janssens,
J. Mascola,
L. Heyndrickx,
P. Hegerich,
G. van der Groen,
F. E. McCutchan,
G. Eddy, and D. Burke.
1995.
Genetic diversity of the HIV-1 envelope glycoprotein from human immunodeficiency virus type 1 isolates of African origin.
J. Virol.
69:263-271[Abstract].
|
| 22.
|
McCutchan, F. E.,
J. K. Carr,
M. Bajani,
E. Sanders-Buell,
T. O. Harry,
T. C. Stoeckli,
K. E. Robbins,
W. Gashua,
A. Nasidi,
W. Janssens, and M. L. Kalish.
1999.
Subtype G and multiple forms of A/G inter-subtype recombinant human immunodeficiency virus type 1 in Nigeria.
Virology
254:226-234[CrossRef][Medline].
|
| 23.
|
McCutchan, F. E.,
M. O. Salminen,
J. K. Carr, and D. S. Burke.
1996.
HIV-1 genetic diversity.
AIDS
10(Suppl. 3):S13-S20.
|
| 24.
|
Neilson, J. R.,
G. C. John,
J. K. Carr,
P. Lewis,
J. K. Kreiss,
S. Jackson,
R. W. Nduati,
D. Mbori-Ngacha,
D. D. Panteleeff,
S. Bodrug,
C. Giachetti,
M. A. Bott,
B. A. Richardson,
J. Bwayo,
J. Ndinya-Achola, and J. Overbaugh.
1999.
Subtypes of human immunodeficiency virus type 1 and disease stage among women in Nairobi, Kenya.
J. Virol.
73:4393-4403[Abstract/Free Full Text].
|
| 25.
|
Nkengasong, J. N.,
W. Janssens,
L. Heyndrickx,
K. Fransen,
P. M. Ndumbe,
J. Motte,
A. Leonaers,
M. Ngolle,
P. Piot, and G. van der Groen.
1994.
Genotypic subtypes of HIV-1 in Cameroon.
AIDS
8:1405-1412[Medline].
|
| 26.
|
Novitsky, V. A.,
M. A. Montano,
M. F. McLane,
B. Renjifo,
F. Vannberg,
B. T. Foley,
T. P. Ndung'u,
M. Rahman,
M. J. Makhema,
R. Marlink, and M. Essex.
1999.
Molecular cloning and phylogenetic analysis of human immunodeficiency virus type 1 subtype C: a set of 23 full-length clones from Botswana.
J. Virol.
73:4427-4432[Abstract/Free Full Text].
|
| 27.
|
Simon, F.,
P. Mauclère,
P. Roques,
I. Loussert-Ajaka,
M. C. Müller-Trutwin,
S. Saragosti,
M. C. Georges-Courbot,
F. Barré-Sinoussi, and F. Brun-Vézinet.
1998.
Identification of a new human immunodeficiency virus type 1 distinct from group M and group O.
Nat. Med.
4:1032-1037[CrossRef][Medline].
|
| 28.
|
Takehisa, J.,
L. Zekeng,
E. Ido,
I. Mboudjeka,
H. Moriyama,
T. Miura,
M. Yamashita,
L. G. Gürtler,
M. Hayami, and L. Kaptue.
1998.
Various types of HIV mixed infections in Cameroon.
Virology
245:1-10[CrossRef][Medline].
|
| 29.
|
Temin, H. M.
1993.
Retrovirus variation and reverse transcription: abnormal strand transfer result in retrovirus genetic variation.
Proc. Natl. Acad. Sci. USA
90:6900-6903[Abstract/Free Full Text].
|
| 30.
|
Thompson, J. D.,
D. G. Higgins, and T. J. Gibson.
1994.
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
Nucleic Acids Res.
22:4673-4680[Abstract/Free Full Text].
|
| 31.
|
Van de Peer, Y., and R. De Wachter.
1994.
TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment.
Comput. Appl. Biosci.
10:569-570[Free Full Text].
|
Journal of Virology, January 2000, p. 363-370, Vol. 74, No. 1
0022-538X/0/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
This article has been cited by other articles:
-
Van Gulck, E. R. A., Ponsaerts, P., Heyndrickx, L., Vereecken, K., Moerman, F., De Roo, A., Colebunders, R., Van den Bosch, G., Van Bockstaele, D. R., Van Tendeloo, V. F. I., Allard, S., Verrier, B., Maranon, C., Hoeffel, G., Hosmalin, A., Berneman, Z. N., Vanham, G.
(2006). Efficient stimulation of HIV-1-specific T cells using dendritic cells electroporated with mRNA encoding autologous HIV-1 Gag and Env proteins. Blood
107: 1818-1827
[Abstract]
[Full Text]
-
Sengupta, S., Jana, S., Roy, P., Sarkar, K., Bhattacharya, S. K., Chakrabarti, S.
(2005). Phylogenetic Analysis of the p24-p7 Region of the Human Immunodeficiency Virus Type 1 gag Gene To Determine Subtype Distribution among Female Sex Workers in Calcutta, India. J. Clin. Microbiol.
43: 5787-5791
[Abstract]
[Full Text]
-
Krachmarov, C., Pinter, A., Honnen, W. J., Gorny, M. K., Nyambi, P. N., Zolla-Pazner, S., Kayman, S. C.
(2005). Antibodies That Are Cross-Reactive for Human Immunodeficiency Virus Type 1 Clade A and Clade B V3 Domains Are Common in Patient Sera from Cameroon, but Their Neutralization Activity Is Usually Restricted by Epitope Masking. J. Virol.
79: 780-790
[Abstract]
[Full Text]
-
Binley, J. M., Wrin, T., Korber, B., Zwick, M. B., Wang, M., Chappey, C., Stiegler, G., Kunert, R., Zolla-Pazner, S., Katinger, H., Petropoulos, C. J., Burton, D. R.
(2004). Comprehensive Cross-Clade Neutralization Analysis of a Panel of Anti-Human Immunodeficiency Virus Type 1 Monoclonal Antibodies. J. Virol.
78: 13232-13252
[Abstract]
[Full Text]
-
Roudinskii, N. I., Sukhanova, A. L., Kazennova, E. V., Weber, J. N., Pokrovsky, V. V., Mikhailovich, V. M., Bobkov, A. F.
(2004). Diversity of Human Immunodeficiency Virus Type 1 Subtype A and CRF03_AB Protease in Eastern Europe: Selection of the V77I Variant and Its Rapid Spread in Injecting Drug User Populations. J. Virol.
78: 11276-11287
[Abstract]
[Full Text]
-
Siddappa, N. B., Dash, P. K., Mahadevan, A., Jayasuryan, N., Hu, F., Dice, B., Keefe, R., Satish, K. S., Satish, B., Sreekanthan, K., Chatterjee, R., Venu, K., Satishchandra, P., Ravi, V., Shankar, S. K., Shankarappa, R., Ranga, U.
(2004). Identification of Subtype C Human Immunodeficiency Virus Type 1 by Subtype-Specific PCR and Its Use in the Characterization of Viruses Circulating in the Southern Parts of India. J. Clin. Microbiol.
42: 2742-2751
[Abstract]
[Full Text]
-
Njai, H. F., Van der Auwera, G., Ngong, C. A., Heyndrickx, L., Sawadago, S., Whittle, H., Nyambi, P., Colebunders, R., van der Groen, G., Janssens, W.
(2004). Development, Evaluation, and Validation of an Oligonucleotide Probe Hybridization Assay To Subtype Human Immunodeficiency Virus Type 1 Circulating Recombinant Form CRF02_AG. J. Clin. Microbiol.
42: 1428-1433
[Abstract]
[Full Text]
-
Soares, C. C., Volotao, E. M., Albuquerque, M. C. M., Nozawa, C. M., Linhares, R. E. C., Volokhov, D., Chizhikov, V., Lu, X., Erdman, D., Santos, N.
(2004). Genotyping of Enteric Adenoviruses by Using Single-Stranded Conformation Polymorphism Analysis and Heteroduplex Mobility Assay. J. Clin. Microbiol.
42: 1723-1726
[Abstract]
[Full Text]
-
Grenfell, B. T., Pybus, O. G., Gog, J. R., Wood, J. L. N., Daly, J. M., Mumford, J. A., Holmes, E. C.
(2004). Unifying the Epidemiological and Evolutionary Dynamics of Pathogens. Science
303: 327-332
[Abstract]
[Full Text]
-
Fischer, A., Lejczak, C., Lambert, C., Servais, J., Makombe, N., Rusine, J., Staub, T., Hemmer, R., Schneider, F., Schmit, J. C., Arendt, V.
(2004). Simple DNA Extraction Method for Dried Blood Spots and Comparison of Two PCR Assays for Diagnosis of Vertical Human Immunodeficiency Virus Type 1 Transmission in Rwanda. J. Clin. Microbiol.
42: 16-20
[Abstract]
[Full Text]
-
Sawadogo, S., Adje-Toure, C., Bile, C. E., Ekpini, R. E. A., Chorba, T., Nkengasong, J. N.
(2003). Field Evaluation of the gag-Based Heteroduplex Mobility Assay for Genetic Subtyping of Circulating Recombinant Forms of Human Immunodeficiency Virus Type 1 in Abidjan, Cote d'Ivoire. J. Clin. Microbiol.
41: 3056-3059
[Abstract]
[Full Text]
-
Kitrinos, K. M., Hoffman, N. G., Nelson, J. A. E., Swanstrom, R.
(2003). Turnover of env Variable Region 1 and 2 Genotypes in Subjects with Late-Stage Human Immunodeficiency Virus Type 1 Infection. J. Virol.
77: 6811-6822
[Abstract]
[Full Text]
-
Plantier, J.-C., Vergne, L., Damond, F., MBoup, S., MPoudi-NGole, E., Buzelay, L., Farfara, I., Brand, D., Peeters, M., Brun-Vezinet, F., Delaporte, E., Barin, F.
(2002). Development and Evaluation of a DNA Enzyme Immunoassay Method for env Genotyping of Subtypes A through G of Human Immunodeficiency Virus Type 1 Group M, with Discrimination of the Circulating Recombinant Forms CRF01_AE and CRF02_AG. J. Clin. Microbiol.
40: 1010-1022
[Abstract]
[Full Text]
-
Doukhan, L., Delwart, E.
(2001). Population Genetic Analysis of the Protease Locus of Human Immunodeficiency Virus Type 1 Quasispecies Undergoing Drug Selection, Using a Denaturing Gradient-Heteroduplex Tracking Assay. J. Virol.
75: 6729-6736
[Abstract]
[Full Text]
-
Moore, J. P., Parren, P. W. H. I., Burton, D. R.
(2001). Genetic Subtypes, Humoral Immunity, and Human Immunodeficiency Virus Type 1 Vaccine Development. J. Virol.
75: 5721-5729
[Full Text]
-
Agwale, S. M., Robbins, K. E., Odama, L., Saekhou, A., Zeh, C., Edubio, A., Njoku, O. M., Sani-Gwarzo, N., Gboun, M. F., Gao, F., Reitz, M., Hone, D., Folks, T. M., Pieniazek, D., Wambebe, C., Kalish, M. L.
(2001). Development of an env gp41-Based Heteroduplex Mobility Assay for Rapid Human Immunodeficiency Virus Type 1 Subtyping. J. Clin. Microbiol.
39: 2110-2114
[Abstract]
[Full Text]
-
de Baar, M. P., Timmermans, E. C., Bakker, M., de Rooij, E., van Gemen, B., Goudsmit, J.
(2001). One-Tube Real-Time Isothermal Amplification Assay To Identify and Distinguish Human Immunodeficiency Virus Type 1 Subtypes A, B, and C and Circulating Recombinant Forms AE and AG. J. Clin. Microbiol.
39: 1895-1902
[Abstract]
[Full Text]
-
Vidal, N., Peeters, M., Mulanga-Kabeya, C., Nzilambi, N., Robertson, D., Ilunga, W., Sema, H., Tshimanga, K., Bongo, B., Delaporte, E.
(2000). Unprecedented Degree of Human Immunodeficiency Virus Type 1 (HIV-1) Group M Genetic Diversity in the Democratic Republic of Congo Suggests that the HIV-1 Pandemic Originated in Central Africa. J. Virol.
74: 10498-10507
[Abstract]
[Full Text]
-
Korber, B., Muldoon, M., Theiler, J., Gao, F., Gupta, R., Lapedes, A., Hahn, B. H., Wolinsky, S., Bhattacharya, T.
(2000). Timing the Ancestor of the HIV-1 Pandemic Strains. Science
288: 1789-1796
[Abstract]
[Full Text]