INTRODUCTION

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The herpes simplex virus-1 (HSV-1) virion consists of four distinct compartments: glycoprotein-containing envelope, tegument, capsid, and DNA core. The T=16 icosahedral capsid shell is 160 Å thick and has a diameter of 1,250 Å. Historically, capsids have been considered to exist in three forms, B-capsids (containing scaffolding proteins), C-capsids (containing viral DNA), and A-capsids (empty). B-capsids contain seven structural proteins (24). Four of these constitute the capsid shell: VP5 and VP26 make up the capsomeres, while VP19C and VP23 together form the triplexes, which fit between, and link together, adjacent capsomeres (19, 43). The three remaining proteins (VP21, VP24, and VP22a) are involved in formation and processing of the scaffold.

Functional scaffolding proteins are essential for HSV-1 capsid assembly and maturation, and considerable effort has gone into determining their properties and roles. They are expressed from a pair of overlapping genes, UL26 and UL26.5, in which the open reading frame of UL26 is an in-frame N-terminal extension of the UL26.5 open reading frame (12). The larger gene encodes a protease, which cleaves itself internally to give the proteins VP24 and VP21. It also cleaves both itself and the product of the smaller gene (the abundant scaffolding protein pre-VP22a) at a second site near its C terminus (12, 23). This maturational cleavage removes a 25-amino-acid sequence that is known to interact with the major capsid protein, VP5 (8). The interaction is essential for correct capsid shell formation, and in circumstances where it cannot take place, the outer-shell proteins self-assemble into aberrant structures (9, 14, 30). The maturational cleavage is also an essential step, and if it is inhibited the scaffolding proteins are retained within the capsid, preventing packaging of the viral genome (6, 22).

Although the internal capsid scaffold is not icosahedrally ordered (33, 42), it interacts with the icosahedral shell in a regular manner (42) and clearly has a role in controlling the symmetry of the particle. If the three essential shell proteins (VP5, VP19C, and VP23) are expressed in the absence of functional scaffolding proteins, they form structures that have the appearance of partial and incomplete shells in negatively stained samples (2, 29, 31). These structures have recognizable capsomeres that are organized into hexagonal networks. This suggests that the scaffold is important for determining the curvature and ultimate closure of the capsid shell rather than in controlling the precise interactions of its subunits. A different type of particle is made when only VP5 and VP19C are present. In this case, densely staining spherical particles are formed (25, 31), which are markedly smaller than the intact capsid. These VP5-VP19C particles also contain recognizable capsomeres organized in a hexagonal pattern, but, in contrast to the VP5-VP19C-VP23 shells, many of them appear to be closed, intact spheres. The formation of VP5-VP19C particles demonstrates that VP19C alone is sufficient to link capsomeres together and that it does not require the other triplex protein, VP23. However, the differences between the shell structures formed in the presence and absence of VP23 indicate that VP23 does have a role in modulating the nature of the interaction between VP5 and VP19C and/or between VP5 subunits of adjacent capsomeres.

Triplexes are heterotrimers, formed by two copies of one protein (VP23; 34 kDa) and a single copy of an unrelated protein (VP19C; 53 kDa) (19). It has recently been shown that functional triplexes can assemble in isolation from the other capsid proteins (28). This demonstrates that heterotrimer formation is an intrinsic property of the component proteins. In addition, purified VP23 is known to be in a partially folded "molten globule" state (10), suggesting that its final conformation is influenced by its local environment and interactions.

In this paper, we report the three-dimensional (3-D) structure of recombinant VP5-VP19C particles by electron cryomicroscopy and computer image processing. Structural comparisons between VP5-VP19C particles and typical capsids have allowed us to localize VP19C and VP23 in the triplex and to suggest possible ways in which the scaffolding and triplex proteins influence capsid morphogenesis.

	MATERIALS AND METHODS

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Capsid preparation. The VP26 capsids were purified from Sf21 cells coinfected with five different recombinant baculoviruses expressing VP5, VP19C, VP23, VP22a, and the HSV-1 protease (41). VP5-VP19C particles were purified from cells infected with recombinant baculoviruses expressing only VP5 and VP19C as described previously (25).

Electron cryomicroscopy. Purified VP26 particles were embedded in vitreous ice suspended across the holes in holey carbon grids. Electron cryomicroscopy observation was done by spot scan illumination following established procedures (43). The ice-embedded VP5-VP19C particles were imaged with flood beam rather than spot scan illumination. Microscope alignment, specimen assessment, and focusing were performed with a Gatan (Pleasanton, Calif.) 1,024- by 1,024-pixel slow-scan charge-coupled device camera (27). All micrographs were recorded at a magnification of ×30,000 on Kodak SO163 film in a JEOL4000 electron cryomicroscope operating at 400 kV with a LaB₆ filament under minimal dose conditions (~7 electrons/Ų).

Image digitization and preprocessing. Forty selected micrographs were digitized on a SCAI scanner (Carl Zeiss, Englewood, Colo.) at a step size of 4.67 Å/pixel. A total of 1,300 particle images (240 by 240 pixels) were selected automatically (26). The image quality was assessed quantitatively with EMAN software (12a) by evaluating the contrast transfer function rings visualized in the incoherently averaged Fourier transforms of particle images. We used 700 particles from these micrographs with the first zeros of their contrast transfer functions between 1/20 and 1/24 Ź (40) for further analysis.

Data compression and noise reduction. The raw images of individual VP5-VP19C recombinant particles are noisy and relatively large (880 Å). In order to enhance the signal-to-noise ratio and reduce the time needed for an initial reconstruction, we employed the wavelet transformation method (13, 15, 16). We used the first component, called the "approximation" from the first level of wavelet decomposition. The approximation is obtained after the application of a low-pass filter (11) and subsampling of each particle image by a factor of 2 for each dimension to reduce the size of the images to 120 by 120 pixels. In order to get a higher signal-to-noise ratio, we grouped the reduced images with similar orientations into classes as employed in single-particle reconstruction methods (4, 5, 35, 36).

Evaluation of particle symmetry. Determining the particle symmetry is an important step in the 3-D-reconstruction procedure because it allows one to simplify the particle orientation search and to impose symmetry averaging. In order to determine the symmetry of the VP5-VP19C particle, we analyzed the real-space self-common lines of class-averaged images with different point group symmetry assumptions. We computed the Self-Sincorr (37) functions for each class-averaged image and searched for the Euler angles of the particle by finding the smallest standard deviation between the peaks of assumed point group symmetries. This evaluation indicated that the selected particles had icosahedral symmetry, and thus, in all subsequent data-processing steps, icosahedral symmetry was assumed.

Low-resolution model. During the initial low-resolution reconstruction step, we used the class-averaged images obtained after wavelet transformation. The angular reconstitution method (34, 38) was used to assign Euler angles to each class average. Then a 3-D reconstruction was calculated by using the exact-filter back-projection algorithm (7). The orientation of an individual particle was initially assigned to that of the class average to which it belonged. The particle orientations were then iteratively refined by using projections computed from the preliminary reconstruction. The resolution of the model obtained from the wavelet-filtered images was ~37 Å.

Final reconstructions. The low-resolution model of the VP5-VP19C particles did not make use of all the information inherent in our raw image data. Therefore, we reconstructed its final map from the original VP5-VP19C particle images without wavelet compression and class averaging. First, the low-resolution model was scaled up to the same dimensions as the original image and projections were computed from this model to refine the Euler angles for each of the original particle images by the angular-reconstitution technique. Consequently, an improved 3-D reconstruction was computed and used for further angle and center refinement. This reconstruction and refinement procedure was iterated for several rounds until no further significant improvement was obtained.

Comparison of connecting densities. Structure extraction and graphic rendering were carried out by using the Explorer software package (NAG, Downers Grove, Ill.) with custom-designed modules (3). The VP19C density was computationally isolated from the VP5-VP19C particle by assuming that its interface with VP5 was a plane forming a tangent with the surface of the hexon. The triplex was extracted from the 3-D reconstruction of another recombinant capsid that contains all the capsid proteins except VP26 (the VP26 capsid) (41) by the same procedure.

	RESULTS

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3D structure of VP5-VP19C particles. The protein composition of VP5-VP19C particles (Fig. 1A) and their appearance in thin-section and negative-stain electron microscopy have been described previously (25). Figure 1B shows a 400-kV electron microscopic image of ice-embedded VP5-VP19C particles. The intact particles appear spherical but have different sizes. Particles of an apparently uniform size class (~880 Å), which constitute over 50% of the population, were chosen for computer analysis and reconstruction. At the start of the data analysis, we had to determine if the particle had any symmetry. Therefore, we examined different possible point group symmetries, including dihedral, icosahedral, cubic, and tetragonal, as described in Materials and Methods. This analysis concluded that the particle is icosahedral, and thus icosahedral symmetry was assumed in our subsequent data processing.

View larger version (48K): [in this window] [in a new window]   FIG. 1.   (A) Sodium dodecyl sulfate gel of purified wild-type B-capsids (left) and recombinant VP5-VP19C particles (right). In the right lane, two bands are evident, with molecular masses of ~150 and 53 kDa, corresponding to VP5 and VP19C, respectively. (B and C) 400-kV electron microscopic images of ice-embedded VP5-VP19C particles (B) and VP26 particles (C). One VP5-VP19C particle is enclosed by a dotted circle. The defocus values are 2.9 (B) and 2.6 (C) µm.

View larger version (71K): [in this window] [in a new window]   FIG. 2.   Three-dimensional reconstructions of the recombinant VP26 capsid (A) and VP5-VP19C particle (B). (A) The VP26 capsid forms a T=16 icosahedron with a diameter of 1,250 Å. (B) The VP5-VP19C particle forms a T=7 icosahedron with a diameter of 880 Å. Both maps are viewed along an icosahedral twofold axis and color coded according to the particle radius, as indicated by the color bars. All isosurfaces are displayed with a contour level of 2 standard deviations from the mean. The arrangement of capsomeres and intercapsomeric connections in one triangular face are illustrated for the VP26 capsid (C) and the VP5-VP19C particle (D), respectively. The pentons (5) are labeled, as are single P, E, and C hexons and Ta to Tf triplexes in panel C.

Comparison of hexons. In order to illustrate differences affecting the hexons of the VP26 and VP5-VP19C particles, we computationally extracted a C hexon from the VP26 capsid and a hexon from the VP5-VP19C capsid, together with portions of the surrounding capsomeres. Figure 3A and B shows outside views of corresponding portions from the VP26 capsid and the VP5-VP19C particle, respectively. Figure 3E and F shows the equivalent inside views. In both views, the maps appear very different. For example, the individual VP5 subunits in the VP5-VP19C particle are much less well resolved than those in the VP26 capsid, making it harder to see the sixfold nature of the hexon. This is particularly obvious in the views of the inner surface (compare Fig. 3E and F), where the floor density of the VP5-VP19C particle is irregular and discontinuous between adjacent subunits. In addition, the hexon subunits in the VP26 capsid are arranged as a regular hexagon while those in the VP5-VP19C particle appear skewed and deviate from sixfold symmetry. This is more readily seen in the contour plots of a 5-Å-thick slice from the upper regions of the hexons (Fig. 3C and D).

View larger version (65K): [in this window] [in a new window]   FIG. 3.   Comparison of hexons in VP26 capsids and VP5-VP19C particles. The outer (A and B) and inner (E and F) views of the hexon environment in VP26 capsids and VP5-VP19C particles, respectively, are shown. The triangles denote local threefold positions that are occupied by connecting densities. That between the central hexon and the hexons labeled 1 and 6 denotes the strict icosahedral threefold position. The yellow circles in panels A and B highlight the connecting masses between two adjacent hexons. The black circles highlight regions where the capsid floor is present in the VP26 capsid (E) but absent in the VP5-VP19C particle (F). (C and D) Contour plots of 5-Å-thick slices taken at 25 Å below the uppermost part of each type of hexon, which reveal the contrast between the sixfold symmetry in the VP26 hexon (C) and the skewed nature of the subunits in the VP5-VP19C hexon (D). The densities are color coded according to the capsid radius, as indicated by the color bars.

Intercapsomeric connections. The pattern of intercapsomeric connections in the VP5-VP19C particle, shown in Fig. 2D, exhibits similarities with the simplified representation of the pattern of triplex connections in the VP26 capsid (Fig. 2C), with pairs of connections between adjacent hexons. However, the network of connections is less extensive and, notably, there are no connections to the pentons. Examination of the hexon environment (Fig. 3) reveals that, although mass density is present at the strict, and some of the local, threefold positions in the VP5-VP19C particle (Fig. 3B), it does not have the characteristic appearance of triplexes (Fig. 3A). Since the VP5-VP19C particles do not contain the second triplex protein, VP23, we interpret these connecting masses as each consisting of a single molecule of VP19C. Though density is clearly present at the icosahedral threefold positions in the center of each triangular face, its shape cannot be ascertained due to the imposition of symmetry in the reconstruction step.

View larger version (94K): [in this window] [in a new window]   FIG. 4.   Spatial arrangement of hexons in VP26 capsids and VP5-VP19C particles. Two adjacent hexons with connecting masses, computationally extracted from the VP26 (A) and VP5-VP19C (B) particles, are shown in similar orientations. The circles highlight the positions of a triplex in the VP26 particle and a VP19C connection in the VP5-VP19C particle. The diameter of the circle (~77 Å) is the distance spanned by VP19C and the triplex.

View larger version (84K): [in this window] [in a new window]   FIG. 5.   Floor connections of triplexes and VP19C. (A and B) Views from opposite sides of an isolated Tc triplex from the VP26 capsid together with the underlying floor density; the space between the two dotted lines represents the floor. (C and D) Similar orientations of an isolated VP19C connection and its associated floor from the VP5-VP19C particle. The two legs (1 and 2) and the tail (3) that connect the triplex to the floor are indicated in panels A and B. In panels C and D, the single contact between the VP19C connection and the floor density that corresponds to the tail connection is indicated (3). The two legs in the triplex (A and B) and the equivalent positions below the VP19C connection (C and D) are circled.

Locations of the triplex proteins. In an attempt to identify the locations of VP19C (53 kDa) and VP23 (34 kDa) in the triplex, we compared an averaged triplex and an averaged VP19C connection (Fig. 6). To calculate the averages, we used the four structurally similar triplexes, Tb, Tc, Td, and Te, and the two icosahedrally unrelated VP19C connections. In each case we carried out a 3-D alignment of the isolated densities before averaging. Figure 6A to D shows the averaged triplex and the averaged VP19C connection viewed from head on and from one side. Figure 6E to H shows the two structures superimposed. The presence of density from the VP19C connection, extending beyond the apparent molecular boundaries of the triplex, implies that the conformation of VP19C is not perfectly conserved between the VP26 and VP5-VP19C particles. However, the major portion of the upper part of the triplex and the regions which make contact with the hexons are clearly formed by VP19C. By contrast, most of the lower part of the triplex has no counterpart in the VP19C connection. Presumably, this part is largely contributed by VP23.

View larger version (75K): [in this window] [in a new window]   FIG. 6.   Localization of VP19C and VP23. A computationally averaged (see Materials and Methods) triplex (blue) and an averaged VP19C connection (magenta) are shown from a front (A and C) and a side (B and D) view. The two structures are shown superimposed in the same orientations in panels E to H. For each pair of images, either the VP19C (E and F) or the triplex (G and H) density is shown in semitransparency to allow the position of the other structure to be seen. The densities thought to represent the two molecules of VP23 (I and J) were computationally isolated from the difference map between the triplex and the VP19C connection.

Comparison of pentons. We computationally extracted the pentons and part of the surrounding capsid shell from the 3-D structures of the VP26 capsid and the VP5-VP19C particle (Fig. 7). Both types of penton have similar diameters (~145 Å), although the VP26 penton has a central channel which is not present in the VP5-VP19C penton. The alignment of the VP5 subunits with respect to the adjacent hexons appears to have changed such that the VP5-VP19C penton seems to be rotated by about 36° relative to the VP26 penton. Each of the penton subunits in the VP26 particle (Fig. 7A) is connected to a triplex, Ta. By contrast, there are no densities linking the hexons and pentons in the VP5-VP19C particle which might correspond to the VP19C connections between neighboring hexons seen in Fig. 3B, and the only visible connections between the pentons and hexons are the limited contacts formed at the floor of the shell. Although the boundaries of a single VP5 subunit in the VP5-VP19C particle are not easily discerned, there are obvious differences between the penton subunits in the two capsid types. Some of these may be due to conformational changes that particularly affect the upper portions of VP5. However, a striking difference is due to the presence of five prominent extra masses around the middle of the VP5-VP19C penton (Fig. 7B).

View larger version (59K): [in this window] [in a new window]   FIG. 7.   Comparison of pentons in VP26 capsids and VP5-VP19C particles. Outer views of the penton environment in VP26 capsids (A) and VP5-VP19C particles (B) are shown. The red circle highlights the position of a triplex in panel A. An additional mass present on the side of the penton in the VP5-VP19C particle that may represent a molecule of VP19C is circled in panel B. The arrow in panel A indicates the alignment of a single VP5 subunit with respect to the neighboring hexons. The pair of arrows in panel B indicates the apparent rotation of subunit density in the VP5-VP19C penton relative to the VP26 penton. The maps are color coded according to the particle radius, as indicated by the color bars.

	DISCUSSION

Top Abstract Introduction Materials and Methods Results Discussion References

Conformational variation in penton and hexon. Apart from the obvious gross differences between the appearance of VP26 capsids and VP5-VP19C particles, there are subtle variations in the appearance of their pentons and hexons. The alteration to the penton can be partly explained by changes in the conformation of the subunits; however, as can be seen in Fig. 7, the lack of connecting masses equivalent to Ta triplexes also causes obvious differences. The reason why there are no connections between the penton and hexons may be related to the apparent rotation of the penton in the VP5-VP19C particles, since this would move the VP19C binding sites on the penton and hexon out of alignment. Changes in either the separation or orientation of the binding sites could prevent VP19C from establishing connections at both ends. It is notable, therefore, that a prominent additional mass is present at the midpoint of each VP5-VP19C penton subunit (Fig. 7B). Although the precise boundaries of this mass are uncertain, it corresponds to at least ~37 kDa. The midpoint of each penton VP5 is the region to which the Ta triplex would normally bind, and the extra mass may, therefore, represent a "collapsed" VP19C molecule which has bound at only one end.

Capsid size and curvature. The size of an icosahedral capsid is determined by the dimensions, separation, and arrangement of its component subunits. As described above, in VP5-VP19C particles the sizes of individual subunits are similar to those in normal capsids but the VP5-VP19C particle is markedly smaller (880 instead of 1,250 Å) and has a different arrangement of capsomeres (T=7 instead of T=16). Such behavior is not unique to herpesviruses and is also found in a number of bacteriophages. An example that shows considerable similarity to HSV is bacteriophage P22 (32), in which the capsid shell protein can also assemble into smaller-than-normal particles. Thus, in the absence of the P22 scaffolding protein, two different types of structure can form. Large particles, which are essentially identical to the normal T=7 P22 procapsid head, and more abundant, smaller, T=4 particles.

Structural roles of VP19C and VP23. It is clear that VP19C forms intercapsomeric interactions with VP5 in both the VP26 and VP5-VP19C particles. The comparison shown in Fig. 4, demonstrates that VP19C alone determines the basic dimensions of the triplex and forms its connections with the capsomeres. Thus the VP5-VP19C interaction appears to be the key to forming an icosahedral particle. However, VP23 is able to influence the formation of complexes between VP5 and VP19C. Thus, if VP5, VP19C, and VP23 are expressed together, neither the 880-Å particle nor the normal capsid is formed and only incomplete shells and spiral forms are seen (2, 29, 31).