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Journal of Virology, August 1999, p. 6430-6435, Vol. 73, No. 8
0022-538X/99/$04.00+0
Both Memory and
CD45RA+/CD62L+ Naive CD4+ T Cells
Are Infected in Human Immunodeficiency Virus Type 1-Infected
Individuals
Mario A.
Ostrowski,*
Tae-Wook
Chun,
Shawn J.
Justement,
Ivette
Motola,
Michael A.
Spinelli,
Joseph
Adelsberger,
Linda A.
Ehler,
Stephanie B.
Mizell,
Claire W.
Hallahan, and
Anthony S.
Fauci
Laboratory of Immunoregulation, National
Institute of Allergy and Infectious Diseases, National Institutes of
Health, Bethesda, Maryland 20892
Received 2 November 1998/Accepted 12 April 1999
 |
ABSTRACT |
Cellular activation is critical for the propagation of human
immunodeficiency virus type 1 (HIV-1) infection. It has been suggested
that truly naive CD4+ T cells are resistant to productive
HIV-1 infection because of their constitutive resting state. Memory and
naive CD4+ T-cell subsets from 11 HIV-1-infected
individuals were isolated ex vivo by a combination of magnetic bead
depletion and fluorescence-activated cell sorting techniques with
stringent criteria of combined expression of CD45RA and CD62L to
identify naive CD4+ T-cell subsets. In all patients HIV-1
provirus could be detected within naive
CD45RA+/CD62L+ CD4+ T cells; in
addition, replication-competent HIV-1 was isolated from these cells
upon CD4+ T-cell stimulation in tissue cultures. Memory
CD4+ T cells had a median of fourfold more
replication-competent virus and a median of sixfold more provirus than
naive CD4+ T cells. Overall, there was a median of 16-fold
more integrated provirus identified in memory CD4+ T cells
than in naive CD4+ T cells within a given patient.
Interestingly, there was a trend toward equalization of viral loads in
memory and naive CD4+ T-cell subsets in those patients who
harbored CXCR4-using (syncytium-inducing) viruses. Within any given
patient, there was no selective usage of a particular coreceptor by
virus isolated from memory versus naive CD4+ T cells. Our
findings suggest that naive CD4+ T cells may be a
significant viral reservoir for HIV, particularly in those patients
harboring CXCR4-using viruses.
 |
INTRODUCTION |
Human immunodeficiency virus type 1 (HIV-1) replication is sustained by continuous rounds of de novo
infection of a pool of rapidly turning over CD4+ T cells in
vivo (20, 21, 27, 35). It is believed that activated
CD4+ T cells which have recently encountered antigen
contribute to this pool (6, 17, 21, 35). T cells can be
subdivided phenotypically into memory and naive subsets. Naive T cells
have not yet encountered antigen, coexpress CD45RA and CD62L, and lack markers of cellular activation (1, 16, 22, 25, 28, 31, 37).
Thus, it is assumed that the pool of rapidly turning over
CD4+ T cells reflects only the memory phenotype. This is
supported by previous observations demonstrating preferential HIV-1
isolation and accumulation of provirus within the memory versus naive
subsets of CD4+ T cells obtained from HIV-1-infected
individuals (4, 5, 8, 32).
Recent studies have shown that although memory
(CD45RO+) and naive (CD45RA+)
CD4+ T cells are equally susceptible to acute infection by
laboratory-adapted (T cell line-tropic) strains of HIV-1, memory
CD4+ T cells have a greater capacity to produce infectious
virus in tissue cultures after activation by various physiologic
stimuli, such as interleukin 2 (IL-2), or anti-CD3 plus anti-CD28
costimulation (5, 30, 34, 36). In particular, Roederer et
al. (30) isolated highly purified populations of naive cells
identified by the dual expression of both CD45RA and CD62L from normal
HIV-uninfected blood donors and showed that these cells were inherently
resistant to productive infection by the LAI strain of HIV-1 after
anti-CD3 and anti-CD28 costimulation. These findings have questioned
the importance of naive CD4+ T cells as a potential
reservoir for HIV-1 and suggest that naive CD4+ T cells in
vivo should be devoid of HIV-1. Previous studies that have identified
culturable HIV-1 from naive CD4+ T cells in HIV-1-infected
individuals only used a single marker, i.e., CD45RA or CD45RO
expression, to separate naive from memory T cells. The increased
expression of CD45RA on memory T cells in HIV-1-infected individuals
may have confounded these analyses due to the contamination of the
naive T-cell compartment with a CD45RA+ population of
memory T cells (30). It has thus been suggested that future
studies examining naive CD4+ T-cell subsets in
HIV-1-infected individuals should utilize cells with dual expression of
CD45RA and CD62L in order to define purer populations of naive cells.
The surface expression of the HIV-1 coreceptors CCR5 and CXCR4 on
CD4+ T cells is differentially expressed on memory versus
naive T cells. Specifically, CCR5, the coreceptor for macrophage-tropic viruses (2, 7, 12-15), is largely restricted to a
CD26high subset of memory T cells. CXCR4, the dominant
coreceptor for T cell line-tropic viruses (11, 18, 33), is
expressed on both memory and naive cells, although more so on naive T
cells (3, 23, 34, and unpublished observations). It
is unknown how this differential expression of the major HIV-1
coreceptors correlates with the susceptibility of these subsets of
cells to viruses of various phenotypes (CCR5-using versus CXCR4-using
virus) in vivo.
In the present study, we sought to determine whether naive T cells from
HIV-1-infected individuals are truly infected with HIV-1 by using more
stringent criteria to identify naive CD4+ T cells based on
the combined phenotype of CD4, CD45RA, and CD62L with an approach
involving quantitative micrococulture and PCR. In addition, we looked
for evidence of phenotypic and genotypic compartmentalization of
viruses within memory and naive T-cell subsets by examining coreceptor
usage and heteroduplex analysis of virus isolates obtained from
respective cell subsets. We confirm that naive T cells are indeed
infected in vivo in HIV-1-infected individuals at all stages of
disease, although the majority of culturable virus and provirus resides
within memory T cells, especially in patients who harbor only
macrophage-tropic (non-syncytium-inducing [NSI]) viruses. We also
demonstrate that naive CD4+ T cells may be an important
viral reservoir in those patients who harbor CXCR4-using
(syncytium-inducing [SI]) viruses.
 |
MATERIALS AND METHODS |
Antibodies and reagents.
The following antibodies and
reagents were obtained from PharMingen (San Diego, Calif.):
CD62L-fluorescein isothiocyanate and CD45RA-phycoerythrin. CD4-perdinin
chlorophyll protein was obtained from Becton Dickinson (San Jose,
Calif.). MT2 cells were obtained from the National Institutes of Health
AIDS Research and Reference Reagent Program. U87MG (microglia) cells
expressing the human CD4 gene and various chemokine receptors were
kindly provided by Dan Littman. RPMI 1640 (BioWhittaker, Walkersville, Md.) was supplemented with glutamine (2 mM) (Biofluids, Rockville, Md.), penicillin-streptomycin (Biofluids), HEPES (15 mM) (Biofluids), and 10% fetal calf serum (FCS). IL-2 was obtained from Boehringer (Mannheim, Germany).
Patients.
Eleven HIV-1-infected adults (Table
1) were subjected to apheresis to obtain
peripheral blood mononuclear cells (PBMCs) according to a protocol
approved by the National Institute of Allergy and Infectious Diseases
institutional review board.
Isolation of memory and naive CD4+ T-cell
populations.
PBMCs were Ficoll separated (lymphocyte separation
medium [LSM]; Organon Teknika, Durham, N.C.) and washed in
phosphate-buffered saline (BioWhittaker)-1% FCS (HyClone, Ogden,
Utah). Prior to sorting, the CD4+ T-cell population was
enriched by depletion of CD14+ and CD8+ cells
with magnetic beads according to the manufacturer's instructions (Dynal, Lake Success, N.Y.). Cells were stained with CD62L-fluorescein isothiocyanate, CD45RA-phycoerythrin, and CD4-perdinin chlorophyll protein at room temperature, washed, and then sorted on an Elite (Coulter, Hialeah, Fla.) cell sorter. In general, 5 to 10 million cells
of a particular phenotype were sorted.
Micrococulture assay.
In order to determine the frequency of
sorted memory and naive cells from patients carrying
replication-competent HIV-1, micrococulture assays were carried out as
previously described (10). Briefly, duplicate fivefold
serial dilutions were performed in an IL-2-containing medium (20 U/ml).
To induce activation, anti-CD3 antibody (mouse ascites fluid at a
1/4,000 dilution) and irradiated autologous PBMCs were added to the
culture. The following day, 3-day-old CD3-stimulated, CD8-depleted
PBMCs from an HIV-negative donor were added to amplify infectious
virus. Cultures were restimulated with CD3-blasts on day 7. Supernatants were collected on day 14 and analyzed for p24 antigen by
enzyme-linked immunosorbent assay (Coulter).
Assays for integrated and total HIV-1 DNA.
Genomic DNA from
purified memory and naive CD4+ T cells was prepared with
the Puregene DNA isolation kit (Gentra Systems, Minneapolis, Minn.).
The total copy number of HIV-1 DNA was determined and quantitated by a
single-round PCR as previously described (33), with primers
RU5-5' (5'-GGTCTCTCTGGTTAGACCAGAT-3') and RU5-3' (5'-CTGCTAGAGATTTTCCACACTG-3'). The assay was performed in
duplicate when possible, with an input DNA of 1 to 2 µg. PCR products
were analyzed by gel electrophoresis followed by liquid hybridization with a 32P-end-labeled probe RU5
(5'-AGTAGTGTGTGCCCGTCTGT-3'). After liquid hybridization,
bands were quantified by PhosphorImager analysis (Molecular Dynamics,
Sunnyvale, Calif.) by using a standard curve based on a PCR of known
copy numbers of serially diluted ACH-2 DNA. For the determination of
integrated DNA, cellular DNA was serially diluted, in duplicate, into
tubes containing 200,000, 40,000, 8,000, 1,600, 320, 16, or 2.4 cell
equivalents and then subjected to a nested PCR, in which first-round
primers consisted of conserved sequences of human Alu (Alu-long
terminal repeat [LTR] 5') and HIV-1 LTR (Alu-LTR 3') and second-round
primers consisted of a portion of the LTR region of HIV-1 DNA (NI-2 5' and NI-2 3') as previously described (33). PCR products were analyzed by gel electrophoresis and then by Southern hybridization with
a 32P-end-labeled probe (NI). The frequency of cells
carrying integrated HIV-1 DNA was determined from the limiting dilution
PCR data by the statistical method of Myers et al. (24).
Virus phenotyping and determination of coreceptor usage.
Cultured virus was phenotyped by using an MT2 cell assay in which 100 µl of culture supernatant (>5,000 reverse transcriptase counts/µl)
was added to MT2 cells and monitored for the presence of syncytia over
a 3-week period. The coreceptor usage of virus isolates was determined
by using U87MG cells expressing the human CD4 gene and one of the
following receptors: CXCR4, CCR5, CCR1, CCR2b, and CCR3. U87MG cells
were maintained in Dulbecco's modified Eagle medium (BioWhittaker)
with 10% FCS, puromycin (1 µg/ml), and G418 (500 µg/ml). The
medium for U87MG cells expressing CD4 alone did not contain G418. A
100-µl volume of culture supernatant was added to plated U87MG cells
(4 × 104 cells per well) in 24-well plates, and
cultures were maintained in 2 ml of Dulbecco's modified Eagle medium
supplemented as described above. Cultures were examined daily for
syncytia, and supernatants were tested for reverse transcriptase
activity on days 7 and 14 as previously described (26).
HTA.
cDNA was synthesized from RNA extracted from plasma and
viral culture supernatants as previously described (26).
Heteroduplex mobility shift assays (HMA) and heteroduplex tracking
assays (HTA) were performed by using nested PCR products of the V3-V5
region of HIV-1 envelope amplified from cDNA from patient plasma
samples obtained on the day of sorting, from DNA from ex vivo-sorted
memory and naive cells, and from cDNA from viral culture supernatants of memory and naive cells. Nested PCR of the V3-V5 region was performed
by using primers ED5 and ED12 in the first round and DR7 and DR8 in the
second round as previously described (26). 32P-labeled single-stranded probes were generated from
DR7-DR8-derived PCR products of cDNA from viral culture supernatants of
memory and naive cells (26). Driver sequences consisted of
envelope PCR products from cDNA of plasma, from DNA derived from
freshly sorted memory and naive cells, and from an unrelated sample
derived from ACH-2 cells. Probes were mixed with driver sequences at a ratio of 1:100 in an annealing buffer, denatured at 94°C for 3 min,
placed on ice for 5 min, and heated to 55°C for 5 min to form
heteroduplexes (26). The resulting reaction mixtures were electrophoresed on 5% polyacrylamide gels (acrylamide/bis ratio, 37.5:1) at 250 V for 3 h, stained with ethidium bromide to assure the even migration of bands, dried, and scanned using a phosphorimager as previously described (26).
Statistical analysis.
Comparisons between memory and naive
CD4+ T-cell subsets were made using a one-sided Wilcoxon
signed rank test. Data are shown as median values in order to better
represent the central tendency. P values were corrected for
multiple comparisons by the Bonferroni method. In comparisons between
memory and naive CD4+ T cells within the subgroup of
patients with SI viruses, P values are not reported because
of the small number of patients (three to four) in the comparison.
 |
RESULTS |
Characterization of HIV-1 viral load in memory and naive
CD4+ T-cell subsets.
We isolated CD4+
T-cell subsets from 11 HIV-1-infected individuals who presented at
various disease stages (Table 1) by using a combination of magnetic
bead depletion and flow cytometric sorting techniques. As previously
described (16, 22, 25, 28, 29, 31), we defined naive
CD4+ T cells as those which dually expressed CD45RA and
CD62L and all other cells as memory (i.e.,
CD45RA
/CD62L
,
CD45RA+/CD62L
, or
CD45RA
/CD62L+). It should be noted that the
memory compartment consisted of activated effector cells as well as
resting memory cells (Fig. 1). The purity
of sorted populations was
96% (data not shown).

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FIG. 1.
Fluorescence-activated cell sorter analysis and sorting
of CD4+ T cells. CD4+-enriched T cells were
obtained by negative bead selection and subsequently stained for the
expression of CD62L, CD45RA, and CD4. Sorting gates are shown for
lymphocytes (left panel), CD4-positive T cells (middle panel), and
naive and memory cells (right panel). Cell purities were always
assessed immediately and 36 h postsorting and were >95%.
|
|
The amount of replication-competent HIV-1 within CD4+
T-cell subsets was determined by using a sensitive quantitative
micrococulture assay. In this assay, serially diluted freshly sorted
memory or naive CD4+ T cells were activated in vitro with
anti-CD3 and IL-2 as previously described (8), and
supernatants from each culture were collected on day 14 for the
determination of HIV-1 p24 by enzyme-linked immunosorbent assay. Both
integrated and unintegrated replication-competent proviruses can be
induced in this assay (9). Infectious virus was detected
from both stimulated memory and naive CD4+ T-cell subsets
in all 11 patients studied (Fig. 2).
Within a given patient, the frequency of cells carrying infectious
HIV-1 in memory CD4+ T-cell subsets was a median of
fourfold greater than that in naive CD4+ T-cell subsets
(range, 0.5- to 19-fold; P < 0.01).

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FIG. 2.
Quantitative virus isolation from memory and naive
CD4+ T-cell subsets. Frequencies of memory and naive
CD4+ T cells carrying replication-competent HIV-1 DNA were
determined by activating sorted CD4+ T-cell memory and
naive subsets on day 0. For each assay, a statistical method developed
by Myers et al. (24) was used to calculate copy numbers or
infectious units per million cells. Patients are grouped according to
the presence of NSI or SI virus isolated in tissue cultures based on
MT2 cell assays. Note the log scale of the y axis.
|
|
HIV-1 proviral DNA was detected in both memory and naive
CD4+ T-cell subsets in all patients studied (Fig.
3) except in the naive CD4+
T-cell population in patient 11. The naive CD4+ T cells in
this patient presumably contained provirus at levels below the limit of
detection of the assay (10 copies/million cells), since small amounts
of virus could be induced in tissue cultures (Fig. 2) in this subset.
Within a given patient there was a median of sixfold greater total
HIV-1 provirus in memory cells than in naive cells (range, 1.3- to
24-fold; P < 0.01).

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FIG. 3.
Quantitation of total proviral HIV-1 DNA in memory and
naive CD4+ T-cell subsets. The number of copies of total
HIV-1 proviral DNA was determined in freshly sorted memory and naive
CD4+ T-cell subsets. Patients are grouped according to the
presence of NSI or SI virus isolated in tissue cultures based on MT2
cell assays. Note the log scale of the y axis.
|
|
The amount of integrated HIV-1 DNA was determined by utilizing a
previously described Alu-LTR nested PCR method that has a sensitivity
at the single copy level (10). The integrated form of HIV-1
DNA was detected in both memory and naive subsets in the majority of
patients studied (Fig. 4). In patient 2, integrated provirus was undetected in the naive CD4+ T-cell
subset, and in patient 11 integrated provirus was undetected in both
subsets. Of note, when comparing the amounts of integrated HIV-1 DNA
found within memory and naive CD4+ T-cell subsets we
observed even greater differences than that observed with total
provirus, with a median of 16-fold more integrated HIV-1 DNA in memory
CD4+ T cells (range, 1.8- to 561-fold; P < 0.01).

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FIG. 4.
Quantitation of integrated HIV-1 DNA in memory and naive
CD4+ T-cell subsets. The number of copies of integrated
HIV-1 proviral DNA was determined in freshly sorted memory and naive
CD4+ T-cell subsets. Integrated provirus was undetectable
in patient 11 in either CD4+ T-cell subset with an input
DNA of 2 µg in the assay. Data for patient 8 were not determined.
Patients are grouped according to the presence of NSI or SI virus
isolated in tissue cultures based on MT2 cell assays. Note the log
scale of the y axis.
|
|
There was a trend toward equalization of the amounts of virus in memory
and naive subsets in those patients who harbored SI viruses
(4, 7, 8, and 10), even though
the average CD4+ T-cell counts of both groups were fairly
comparable, i.e., 526 versus 400 cells/µl, respectively (P = 0.5). For example, there was a median of 10-fold more
replication-competent HIV-1 isolated in memory versus naive
CD4+ T-cell subsets in those patients with NSI viruses
(P = 0.05) but only threefold more in those patients
with SI viruses. Similarly, there was a median of 12-fold more total
HIV-1 provirus in memory versus naive subsets in patients with NSI
viruses (P = 0.05) but only 1.7-fold more in patients
with SI viruses; there was a median of 23-fold more integrated HIV-1
DNA in memory versus naive cells in patients harboring NSI viruses
(P = 0.05) but only threefold more in patients with SI viruses.
Spectrum of coreceptor usage by HIV-1 isolated from memory and
naive CD4+ T-cell subsets.
Since the major HIV-1
coreceptors CCR5 and CXCR4 are differentially expressed on memory and
naive CD4+ T-cell subsets, we looked for evidence of
phenotypic compartmentalization of viruses isolated from memory and
naive subsets within individual patients. In 4 of 11 patients, SI
viruses were isolated from both memory and naive subsets (patients 4, 7, 8, and 10) by MT2 cell assay. In order to determine which
coreceptors were used by viruses induced from sorted memory and naive
subsets, we infected U87MG/CD4 cells stably expressing each of the
chemokine receptors CCR1, CCR2b, CCR3, CCR5, and CXCR4 with virus
isolated from either memory or naive CD4+ T cells from each
patient. Table 2 shows coreceptor usage
of bulk culture supernatants isolated from respective CD4+
T-cell subsets. Within a given patient, coreceptor usage by viruses isolated from memory and naive subsets was identical, indicating a lack
of strict phenotypic compartmentalization of viruses between these
CD4+ T-cell subsets. The usage of CXCR4 of all HIV-1
isolates, as determined with U87MG/CD4 cells, directly correlated with
an SI phenotype.
Genotypic characterization of HIV-1 in memory and naive
CD4+ T-cell subsets.
We also looked for evidence of
genotypic compartmentalization of viruses within these subsets in a
given patient. HTA were performed on samples from three patients by
using nested PCR products of the V3-V5 envelope region of viruses
derived from patient plasma, ex vivo memory and naive CD4+
T cells, and their respective cultures, in order to determine the
genetic relatedness of viruses derived from these samples. Data for two
representative patients are presented in Fig.
5. We could not demonstrate consistent
genetic differences between viruses derived from cultures of memory
versus naive CD4+ T cells. For example, although viruses
derived from cultures of naive CD4+ T cells were
genetically distinct by HTA in patient 5, identical viruses could be
identified in both cultures, respectively, in patient 7 (see the legend
to Fig. 5). Of interest, in all three patients studied, envelope
sequences amplified from patient plasma migrated more closely with
envelope sequences obtained from memory cells than with those from
naive cells, indicating that viruses within plasma are genetically more
similar to those derived from memory cells in these patients.

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FIG. 5.
HTA and accompanying HMA of amplified envelopes obtained
from cDNA in plasma (P), DNA in ex vivo-sorted memory (M) and naive (N)
CD4+ T cells, and supernatant viral culture cDNA of memory
(C-M) and naive (C-N) CD4+ T cells in two representative
patients. U, unrelated sample. For each patient, two HTA were
performed, with a probe made from virus cultured from memory
CD4+ T cells (C-M*) (left side of gel) and a probe made
from virus cultured from naive CD4+ T cells (C-N**) (right
side of gel). In patient 5 (a and b), the migration patterns between
envelopes from cultured memory and naive CD4+ T cells
differed, indicating genetic differences between viruses cultured from
these two subsets; however, in patient 7 (c and d) migration occurred
equally along the length of the gel, indicating the presence of viruses
with genetically identical envelopes. In both patients, envelope PCR
products from cultured memory CD4+ T cells migrated equally
with those from plasma virus (left side of gel), whereas there was a
retardation of migration in the plasma viruses compared to viruses from
naive CD4+ T cells with the probe of virus cultured from
naive CD4+ T cells (C-N**) (right side of gel), thus
indicating the closer genetic similarity of viruses in plasma and
memory cells than in plasma and naive cells.
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|
 |
DISCUSSION |
The present study has demonstrated the presence of inducible virus
and provirus in naive CD4+ T cells from HIV-1-infected
individuals by using specific criteria for identifying naive
CD4+ T cells, namely,
CD45RA+/CD62L+ cells. Overall, memory
CD4+ T cells contained about fourfold more
replication-competent virus and sixfold more total provirus than naive
CD4+ T cells. This quantitative difference in provirus
levels is similar to previous studies that depended upon the expression
of CD45RA alone as a marker for the naive phenotype (5, 9,
32). Of note was the fact that memory CD4+ T cells
contained a median of 16-fold more integrated provirus than naive
CD4+ T cells in the cohort of 11 patients who were studied.
This observation is consistent with the concept that HIV-1 can enter
naive CD4+ T cells in vivo and initiate reverse
transcription but is unable to integrate into the genome as efficiently
as in memory CD4+ T cells (8). Recent in vitro
studies have also demonstrated that CD45RA+
CD4+ T cells can be acutely infected with HIV-1 but are
less efficient in replicating virus upon physiologic stimulation
(8, 30, 34, 36). The mechanisms responsible for these
differences in viral replicative capacity have not been clearly
defined, and possible explanations include lower levels of
deoxynucleoside triphosphate substrates and a deficiency of other
cellular factors in naive cells that are necessary for completion of a
viral replicative cycle (19, 34).
Of note, we observed a tendency for equalization in the amounts of
HIV-1 within naive and memory CD4+ T-cell subsets in those
patients with SI viruses. Given the low-level to absent CCR5 expression
and high-level CXCR4 expression in naive CD4+ T cells, it
is probable that CXCR4-using viruses are able to more readily infect
naive CD4+ T cells than viruses that use CCR5 alone. There
was considerably more virus measured by proviral DNA and infectious
units in memory than in naive CD4+ T cells when the
isolated virus was NSI. However, these differences between memory and
naive cells were much smaller when the isolated virus was SI. These
smaller differences suggest that naive CD4+ T cells may
represent a significant viral reservoir in patients harboring SI
viruses. In addition, absolute reductions in the naive CD4+
T-cell population have been observed with progression of HIV-1 disease
(19, 29, 34). Whether the onset of decline of naive CD4+ T cells in HIV-1-infected individuals correlates with
the emergence of CXCR4-using (SI) viruses will be an avenue for future study.
We asked whether there was evidence for a phenotypic or genotypic
compartmentalization of viruses isolated from memory and naive
CD4+ T-cell subsets, given the differing levels of
chemokine receptor expression and migration patterns these cells
display in vivo (16, 22, 25, 28, 29, 31). Phenotypically,
all virus isolates within a given patient were identical, whether
isolated from memory or naive subsets. It should be noted, however,
that viral phenotypic analysis was performed on bulk cultures isolated from respective memory and naive subsets and thus differences in
coreceptor usage of individual virus variants isolated from memory and
naive cells could not be ruled out. Heteroduplex analysis also did not
show clear genotypic differences between viruses isolated from these
two subsets in the three patients whom we studied. These findings
indicate that there is likely a considerable mixing of viruses in vivo
within these two cell subsets. It was of interest that viruses isolated
from memory cells were genotypically more closely related to those
found in the plasma by heteroduplex analysis in the three patients
studied. This is consistent with the notion that activated effector
CD4+ cells, which also have a memory phenotype, are likely
responsible for the majority of virus produced within the plasma.
We have thus shown that HIV-1 can be identified within naive
CD4+ subsets displaying dual expression of CD45RA and CD62L
and that this cell population may represent a significant viral
reservoir of virus in those patients harboring SI viruses.
 |
ACKNOWLEDGMENT |
Mario A. Ostrowski and Tae-Wook Chun contributed equally to this work.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Laboratory of
Immunoregulation, NIAID, NIH, Building 10, Room 6A11, 9000 Rockville Pike, Bethesda, MD 20892. Phone: (301) 402-2618. Fax: (301) 402-4122. E-mail: mostrowski{at}nih.gov.
 |
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