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Journal of Virology, July 1999, p. 6048-6055, Vol. 73, No. 7
0022-538X/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Generation of an Adenovirus Vector Lacking E1, E2a,
E3, and All of E4 except Open Reading Frame 3
Mario I.
Gorziglia,*
Claudia
Lapcevich,
Soumitra
Roy,
Qiang
Kang,
Mike
Kadan,
Vivian
Wu,
Peter
Pechan, and
Mike
Kaleko
DNA Viral Vector Unit, Genetic Therapy, Inc.,
a Novartis Company, Gaithersburg, Maryland 20879
Received 23 November 1998/Accepted 9 April 1999
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ABSTRACT |
Toxicity and immunity associated with adenovirus backbone gene
expression is an important hurdle to overcome for successful gene
therapy. Recent efforts to improve adenovirus vectors for in vivo use
have focused on the sequential deletion of essential early genes.
Adenovirus vectors have been constructed with the E1 gene deleted and
with this deletion in combination with an E2a, E2b, or E4 deletion. We
report here a novel vector (Av4orf3nBg) lacking E1, E2a,
and all of E4 except open reading frame 3 (ORF3) and expressing a
-galactosidase reporter gene. This vector was generated by
transfection of a plasmid carrying the full-length vector sequence into
A30.S8 cells that express E1 and E2a but not E4. Production was
subsequently performed in an E1-, E2a-, and E4-complementing cell line.
We demonstrated with C57BL/6 mice that the Av4orf3nBg
vector effected gene transfer with an efficiency comparable to that of
the Av3nBg (wild-type E4) vector but that the former exhibited a higher
level of
-galactosidase expression. This observation suggests that
E4 ORF3 alone is able to enhance RNA levels from the
-galactosidase
gene when the Rous sarcoma virus promoter is used to drive transgene
expression in the mouse liver. In addition, we observed less liver
toxicity in mice injected with the Av4orf3nBg vector than
those injected with the Av3nBg vector at a comparable DNA copy number
per cell. This study suggests that the additional deletion of E4 in an
E1 and E2a deletion background may be beneficial in decreasing
immunogenicity and improving safety and toxicity profiles, as well as
increasing transgene capacity and expression for liver-directed gene therapy.
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INTRODUCTION |
Adenovirus vectors are currently
used for gene transfer in basic research and gene therapy protocols due
to their high titers, ability to target a wide range of both dividing
and nondividing cells, and mediation of high-level foreign protein
expression without replication or integration of the viral genome
(4, 18, 36, 37). In spite of this, several factors
significantly limit the utility of currently used adenovirus vectors.
Data obtained from murine and other animal models have shown that host
immune responses to viral and transgene protein products are
responsible for eliminating transduced cells and preventing
readministration (9, 20-22, 41-44). Progress toward the
improvement of these vectors involves strategies to reduce
immunogenicity and toxicity associated with viral backbone gene expression.
Two approaches have been taken to disable adenoviral vectors. One is
based on the concept that removal of all coding sequences for viral
proteins from the vector backbone renders the vector less immunogenic
and restricts the immune response to the injected viral capsid
proteins. This gutted adenovector (7, 15, 24, 27, 30, 31,
34) is propagated in the presence of helper adenovirus. A second
alternative in decreasing adenovirus vector immunogenicity and toxicity
is based on a gene attenuation strategy wherein the sequential removal
of key early genes is anticipated to reduce expression from other
essential genes. This type of vector grows in packaging cell lines that
complement the deleted viral genes. Adenovirus vectors have been
constructed with the E1 gene deleted (28, 36, 37, 45) and
with E1 plus E2a, E2b, or E4 deleted (1, 2, 6, 10, 13, 14, 16, 17,
28, 40). Studies carried out in vitro to evaluate adenovirus vectors with double deletions consistently feature an absence of
detectable replication and late gene expression (1, 17). Recently, we extended those studies by semiquantifying the levels of
early and late transcripts in an adenovector with a double deletion of
E1 and E2a in vitro and in vivo. An analysis of RNA-specific PCR-amplified fragments showed that expression of adenoviral major late
gene products was minimal. In contrast, early promoters such as E4,
pIX, and E2b were found to actively express high levels of gene
transcripts (25).
This molecular evaluation suggests that further elimination of early
genes is required to attenuate viral gene expression. Recently, it has
been demonstrated that additional deletion of the E4 region in an E1
deletion background has a major influence on the stability of the
adenovirus vector genome in addition to prolonging transgene expression
(2, 10, 16, 40). The E4 region, which contains seven open
reading frames (ORFs), is essential for virus growth, DNA replication,
and particle assembly (reviewed in reference 26). In
particular, the E4 region encodes E4 ORF3 and E4 ORF6, which share
functions required for mRNA splicing and accumulation
(5).
In this article we describe the construction of a novel vector
(Av4orf3nBg) lacking E1, E2a, and all of E4 except ORF3 and expressing a
-galactosidase reporter gene. This vector was generated by transfection of a plasmid bearing the entire modified vector genome
into an A549-based cell line that complements E1 and E2a (17). Production was subsequently performed in an E1-, E2a-, and E4-complementing cell line. To determine the effect of E4 viral
gene deletion on vector transduction and liver toxicity, similar doses
of either Av4orf3nBg or Av3nBg (with E1 and E2a deleted)
(17) were administered to C57BL/6 mice. We demonstrate that
the Av4orf3nBg vector exhibits gene transfer with an
efficiency comparable to that of the Av3nBg vector but that the former
exhibits a higher level of
-galactosidase expression. In addition,
we observed less liver toxicity in mice injected with
Av4orf3nBg than in mice injected with Av3nBg at comparable
DNA copy numbers per cell. This study suggests that the additional
deletion of E4 may be useful in limiting cytopathic effects, increasing
transgene capacity, and increasing expression over levels expressed by
double-deletion vectors in the context of liver-directed gene therapy.
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MATERIALS AND METHODS |
Plasmid construction.
The recombinant adenovirus vector with
E1, E2a, and all of E4 except ORF3 deleted, Av4orf3nBg,
expressing a nucleus-targeted
-galactosidase reporter was generated
with a single plasmid, pAv4orf3nBg, containing the entire
adenoviral genome sequence within a pBR-L backbone (Fig.
1). pBR-L is identical to pBR322, except
that it is missing all nucleotide sequences between NdeI (position 2297) and EcoRI (position 4286). A
multiple-cloning site was created between NdeI and
EcoRI by insertion of a DNA linker. This multiple-cloning
site contains sites for EcoRI, NspV, ClaI, BamHI, SalI, BclI,
PacI, and NdeI. Previous cloning had generated a
plasmid in pBR-L that contained the 3' end of the adenovirus type 5 genome (bp 21562 to 35936) lacking the E2a and E3 regions
(17). This plasmid was extended further to contain an
additional segment of the adenoviral genome by incorporating sequences
from the BamHI site (bp 21562) back to the SalI
site (bp 16746), resulting in a plasmid, pdl23. The
modification to the E4 region was created by deleting the
AvrII (bp 35469)-Sse8387 (bp 33289) fragment
(removing all of the E4 coding region except for the E4 promoter) from
a plasmid designated pREpac (Fig. 1A). This plasmid contains the right
end of adenovirus type 5 dl327 (including the E3
XbaI deletion) from the SnaBI site (bp 25171) to
the end of the right inverted terminal repeat (ITR), which was ligated
between the SmaI and HindIII sites of
pBluescript SK(+) (Stratagene). A PacI site (TTAATTAA)
was engineered 152 bp internal to the end of the right ITR by
insertion of a 4-bp sequence, TTAA, adjacent to the TTAA sequence
already present at this location. The HindIII (bp
34936)-SapI (bp 34330) fragment containing the E4 ORF3 was
then cloned into the T4 DNA polymerase blunt-ended
AvrII-Sse8387 site to create
pREpac+orf3. The wild-type E4 region was removed from
pdl23 and replaced by an XbaI-PacI fragment from pREpac+orf3, resulting in plasmid
pdl234 (Fig. 1B). An intermediate cloning vector,
pdl234LE, was created by ligating the
NotI-SpeI fragment from pdl234
(retaining the pBR-L backbone and the E4-modified region) to the left
end of the shuttle plasmid pAvS6a (35), to yield a hybrid
containing the left ITR, packaging signal (
), Rous sarcoma virus
(RSV) promoter, tripartite leader (TPL) nucleotide sequences, regions
lacking E3 and E4, and right ITR (Fig. 1B). The resulting
SpeI site was then used to insert the 25,633-bp
SpeI fragment, derived from the Av3nBg vector, containing the
-galactosidase gene and the region lacking E2a (17).
The final construct containing the entire Av4orf3nBg genome
in a pBR-L backbone is called pAv4orf3nBg (Fig. 1B).

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FIG. 1.
Schematic representation of the adenovirus type 5 E4
region and construction of plasmids for generating the
Av4orf3nBg vector. (A) ORFs of the E4 region are indicated
by open boxes. ORF3 is represented by a hatched bar. (B) Construction
of pAv4orf3nBg. pdl23 is a plasmid that contains
the 3' end of the adenovirus type 5 genome (bp 16746 to 35936) with
deletions in the E2a and E3 regions (17). A
PacI-XbaI fragment from pdl23 was
replaced with a PacI-XbaI fragment containing the
E4 promoter and the ORF3 gene (bp 34936 to 34330), generating
pdl234. The NotI-SpeI fragment from
pdl234 was replaced with a NotI-SpeI
fragment derived from pAvS6a (35) to generate
pdl234LE, which contains the left-end ITR, , RSV
promoter, TPL, regions with E3 and E4 deleted, and right ITR. The
single infectious plasmid, pAv4orf3nBg, was generated by
inserting an SpeI fragment of 25,633 bp flanking the
nucleus-localizing -galactosidase reporter transgene (nBg) gene and
the region with E2a deleted. E4p, E4 promoter; RSV, heterologous RSV
promoter.
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Generation and propagation of the Av4orf3nBg
recombinant adenovirus.
The Av4orf3nBg vector was
generated by cotransfecting 1 µg of NspV-linearized
pAv4orf3nBg and 1 µg of pREpac plasmids with Lipofectamine
(GIBCO-BRL, Gaithersburg, Md.) into 0.3 µM dexamethasone-induced AE1-2a cells. AE1-2a is a stable cell line, derived from A549 cells,
which contains the adenovirus type 5 E1 and E2a genes inducibly expressed from separate glucocorticoid-responsive promoters
(17). Cell cultures were maintained in Richter's CM medium
(BioWhittaker) supplemented with 5% fetal bovine serum. Transfected
cells were lysed after 7 days by five cycles of freezing and thawing,
and the lysate was used to infect a fresh, dexamethasone-induced
monolayer of A70.S54 cells (first amplification), which became
available after the initial transfection. A70.S54 is a stable cell line derived from AE1-2a cells which additionally expresses adenovirus type
5 E4 genes (this cell line will be described elsewhere). After 7 days,
the infected cells were lysed and the crude viral lysate (CVL) was used
to isolate individual plaques for analysis.
Virus production and purification.
CVL from infected A70.S54
cells was used to infect a fresh, induced monolayer of A70.S54 cells.
After 14 days, individual plaques representing Av4orf3nBg
were recovered and virus was purified. This plaque-purified material
was subsequently used to prepare large-scale stocks of virus in A70.S54
cells. The vector Av3nBg (lacking E1 and E2a) was propagated and
purified as previously described (17). Both vectors used in
this study lacked E3, a region not required for viral replication, and
contained the same
-galactosidase expression cassette.
Structural characterization of the Av4orf3nBg
vector.
Adenovector DNA, obtained from CVLs of purified and
amplified plaques, was analyzed by HindIII restriction
enzyme digestion. The resulting fragments were fractionated by agarose
gel electrophoresis and visualized with ethidium bromide. Additionally,
DNAs obtained from CVL of A70.S54 cells infected with Av3nBg or
Av4orf3nBg and DNA from plasmid pAv4orf3nBg were
digested with the HindIII restriction enzyme,
fractionated on a 1% agarose gel, transferred to a Zeta-Probe GT nylon
membrane, and hybridized with 32P-labeled DNA probes
containing sequences specific for E4 ORF3, E4 ORF6, or the entire viral
genome (HindIII-digested pAv4orf3nBg DNA probe).
In vitro gene transfer efficiencies.
The
Av4orf3nBg vector was compared to the Av3nBg vector for its
ability to transfer and express a
-galactosidase-encoding transgene
in A549 cells in vitro. To ensure that equal amounts (equivalent to 10 particles per cell) of each vector were used for infection, the two
adenovirus vectors were quantified by determining optical density at
260 nm (29). Cells were recovered 48 h after gene
transfer by scraping them into a lysis buffer, and
-galactosidase activity was determined by the Tropix GalactoLight
chemiluminescent-reporter assay.
Animal studies.
Five- to six-week-old female C57BL/6 mice
purchased from Harlan-Sprague-Dawley were used. Mice (between four and
six per group) were injected via the tail vein with 200 µl of a low
or high dose of the Av3nBg or Av4orf3nBg vector (6 × 1010 or 3 × 1011 particles per mouse,
respectively). Blood was obtained at the time points indicated in Fig.
8 for determination of levels of alanine aminotransferase (ALT) in
sera. Animals were sacrificed at 7 days, and the livers obtained were
utilized for hematoxylin-eosin,
-galactosidase, Southern blot, and
Northern blot analyses.
Histological analysis.
Liver tissue sections were fixed in
10% neutral buffered Formalin for 24 h, processed by routine
methods on a Sakura VIP tissue processor, and embedded in paraffin,
followed by hematoxylin and eosin staining.
In vivo gene transfer efficiencies.
Immunohistochemical
staining of
-galactosidase was performed by the avidin-biotin
immunoperoxidase method. Briefly, sections were deparaffinized,
rehydrated, and pretreated with 0.3% hydrogen peroxide solution for 30 min at room temperature (RT) to quench endogenous peroxidase activity.
The pretreated sections were then incubated with 2% normal goat serum
for 30 min at RT. After being blocked, the slides were incubated with a
polyclonal antibody to
-galactosidase (Cortex Biochem, Inc.) diluted
1:2,000 in phosphate-buffered saline (PBS) for 1 h at RT, rinsed
in PBS, and then incubated with a biotinylated goat anti-rabbit
antibody for 30 min at RT. Sections were then washed in PBS and
incubated with avidin DH-biotinylated horseradish peroxidase H
(Vectastain Elite ABC kit) for 30 min at RT. After a PBS wash, the
reaction was visualized with diaminobenzidine tetrahydrochloride as the
peroxidase substrate. Sections were counterstained with hematoxylin and
coverslipped. In addition, liver tissues were processed for
quantification of
-galactosidase activity by following the protocol
used for in vitro samples.
Southern blotting.
Total genomic DNA was isolated from mouse
liver with a QIAmp tissue kit (Qiagen) and further incubated with
RNase. DNA concentrations were determined spectrophotometrically. A
total of 10 µg of each DNA sample was digested with BamHI
and subjected to electrophoresis on a 0.8% agarose gel, stained with
ethidium bromide, and transferred to a Zeta-Probe GT membrane
(Bio-Rad). The copy number control standards were prepared by adding
600 and 60 pg of pAv4orf3nBg plasmid DNA, equivalent to 10 and 1 vector copies per cell, respectively, to 10 µg of
BamHI-digested genomic DNA from an uninfected animal. The
32P-labeled probe, prepared by random oligonucleotide
priming, contained
-galactosidase cDNA sequences. The relative
amount of DNA was determined by PhosphorImager analysis as the ratio
between sample and control signals.
Northern blot analysis.
Total RNA was extracted from liver
tissue by the RNAzol B method (Teltest, Inc.). RNA concentration was
quantified by determining the A260. Total RNA
(15 µg) was electrophoresed through a 0.8% agarose-7% formaldehyde
gel, transferred to nylon membrane, and bound to the filter by UV
cross-linking. A DNA probe was radiolabeled by random oligonucleotide
priming of a lacZ cDNA template. The band intensities were
quantified with a Molecular Dynamics PhosphorImager SF.
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RESULTS |
Construction of Av4orf3nBg plasmid.
Av4orf3nBg, a new-generation vector lacking E1, E2a, and all
of E4 except ORF3 and expressing a nucleus-targeted
-galactosidase reporter, was constructed in several steps. E4 ORF3 was maintained in
the vector backbone for two reasons. First, we had a cell line that
complemented only E1 and E2a functions (17) and
transient-transfection experiments with 293 cells demonstrated that
expression of E4 ORF3 alone could support growth of a virus with E4
deleted, dl1011 (5), although not as well as a
virus with the entire E4. Second, previous studies suggested that E4
gene products helped maintain vector transgene expression (2, 6,
10).
In developing the next phase of construction, we took advantage of an
observation made by other investigators, namely, that
an entire
adenovirus genome could be propagated as a bacterial
plasmid. After
release from the plasmid by restriction digestion
and transfection into
cells, the cloned viral genome could produce
infectious virus (
19,
39). Our strategy is outlined in Fig.
1. The
NotI-
SpeI fragment (1,020 bp) from plasmid pAvS6a
containing
the 5' terminus, ITR, packaging signal, RSV promoter,
and TPL
was subcloned into p
dl234 to produce
p
dl234LE, which contained
the E3 and E4 deletions, as well
as the right ITR. To generate
the final plasmid,
pAv4
orf3nBg, p
dl234LE was cut with
SpeI and
ligated with a
SpeI fragment of 25,633 bp prepared from the Av3nBg
adenoviral vector (
17) that
carried the

-galactosidase reporter
gene, major late promoter/L4
elements, and the E2a deletion. High
yields of unrearranged
pAv4
orf3nBg were obtained with
Escherichia coli Stbl2 (GIBCO-BRL).
Generation of the Av4orf3nBg vector.
pAv4orf3nBg linearized with NspV was
cotransfected with pREpac (E4+) into dexamethasone-induced
AE1-2a cells (17). Plasmid pREpac was used to provide E4
proteins during virus replication in the E1- and E2a-complementing cell
line. The cells were incubated for 14 days, and the resulting CVL was
used to infect A70.S54 cells (which complement E1, E2A, and E4). When
all the cells demonstrated cytopathic effects, virus was harvested and
a stock was grown by reinfecting fresh A70.S54 cells. The vector growth
was efficient, resulting in approximately 700 viral particles/cell with
purified vector stocks in the range of 2 × 1011 to
4 × 1011 particles/ml as quantified by determining
the optical density at 260 nm.
The genome of Av4
orf3nBg (32,083 bp) was structurally
characterized by restriction enzyme digestion and Southern blot
analysis
(Fig.
2).
HindIII
digestion provided the expected fragment pattern
for the entire genome
in six independent adenovirus vector isolates
(Fig.
2A, lanes 3 to 8).
The same fragments were visualized by
Southern blot analysis (Fig.
2B,
lane 9); of these, the 4.2- and
2.3-kb fragments (lane 9, arrows) are
characteristic of the adenoviral
genome compared to that of the plasmid
DNA and represent the ends
of the adenovirus vector. In the plasmid DNA
these fragments were
not observed; instead, an expected plasmid
fragment of 9.2 kb
was detected (Fig.
2B, lane 7). This restriction
pattern difference
suggests that after transfection, the plasmid DNA
was able to
serve as the template and package the viral genome without
carryover
of extra nucleotides.

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FIG. 2.
Structural characterization of the Av4orf3nBg
vector. (A) Adenovector DNAs obtained from crude lysates of purified
and amplified adenoviral plaques were analyzed by
HindIII restriction enzyme digestion. The DNA fragment
products were fractionated by agarose gel electrophoresis and
visualized with ethidium bromide (lanes 3 to 8). The
HindIII-digested plasmid pAv4orf3nBg (pAv4)
was included as a control (lane 2). The sizes of marker DNA fragments
(1-kb ladder and -HindIII; GIBCO-BRL) are indicated
(lanes 1 and 9). Av4, cells infected with the Av4orf3nBg
vector. (B) Adenovector DNA obtained from crude lysates of cells
infected with the Av3nBg (Av3) or Av4orf3nBg (Av4) vector
and DNA from plasmid pAv4 were digested with the HindIII
restriction enzyme, fractionated on a 1% agarose gel, transferred to a
nylon filter, and hybridized with a 32P-labeled ORF3 DNA
probe (lanes 1 to 3), a 32P-labeled ORF6 DNA probe (lanes 4 to 6), or a 32P-labeled
HindIII-digested pAv4 probe (lanes 7 to 9).
Arrows indicate fragments representing the left and right ends of the
adenovirus vector.
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Evaluation of the E4 region of Av4
orf3nBg by PCR (data not
shown) and by Southern blotting confirmed the expected deletion.
Thus,
the
HindIII restriction digestion gave the expected
2.3-kb
fragment with Av4
orf3nBg (Fig.
2B, lane 9),
rather than the 2.3-
and 1.0-kb fragments corresponding to
the wild-type E4 region
present in the Av3nBg vector (Fig.
2B, lane
8).
Because the transfection contained both the pAv4
orf3nBg and
the pREpac plasmid (which contains the entire E4 region) there
was the
potential of incorporating this entire region in the
Av4
orf3nBg
vector by recombination. Thus, a further
Southern blot analysis
of the E4 region was carried out after
HindIII digestion with
probes specific for E4 ORF3 and
E4 ORF6 nucleotide sequences.
In agreement with the previous results,
the E4 ORF3 probe hybridized
with the 9.2-kb fragment of
pAv4
orf3nBg, the 2.9-kb fragment of
Av3nBg, and the 2.3-kb
fragment of Av4
orf3nBg (Fig.
2B, lanes
1, 2, and 3, respectively). As predicted, the E4 ORF6 probe recognized
only
the 2.9-kb fragment of the Av3nBg vector (Fig.
2B, lane 5).
Altogether, these results demonstrated that the E4 region of
Av4
orf3nBg
contained only E4 ORF3 and that the
adenovector was free of any
wild-type E4 sequences. In addition,
HindIII fragments of 6.5
and 3.7 kb were observed
in both the Av3nBg (Fig.
2B, lane 8)
and Av4
orf3nBg (Fig.
2B, lane 9) vectors; these fragments verified
the E2a deletion (6.5 kb)
and the E3 deletion (3.7 kb). PCR evaluation
of the E2a and E3
regions also confirmed the expected deletions
(data not
shown).
Quantitative analysis of in vitro
-galactosidase
expression.
A remarkable feature that emerged from infection with
the adenoviral vectors with E1 and E4 deleted was that expression
of a reporter gene under the control of the cytomegalovirus (CMV) or RSV promoter was influenced by E4 protein expression (2, 6,
10). Thus, a quantitative
-galactosidase assay was used to
evaluate transgene expression in a noncomplementing A549 cell background, by comparing the
-galactosidase expression of the Av3nBg
vector (E4+) to that of the Av4orf3nBg vector.
Under the conditions used in this experiment (10 particles/cell) there
was about fivefold more
-galactosidase detected in cells transduced
with Av4orf3nBg than in those transduced with Av3nBg (Fig.
3A).

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FIG. 3.
Av4orf3nBg vector gene transfer efficiency in
vitro (A) and in vivo (B). (A) Noncomplementing A549 cells were
infected with either the Av3nBg (Av3) or the Av4orf3nBg
(Av4) vector at equivalent doses of 10 particles/cell based on the
optical density measurements of the adenoviral vectors at 260 nm.
-Galactosidase activity in cell lysates was determined 48 h
postinfection by the Tropix GalactoLight chemiluminescent-reporter
assay. The results are expressed as relative light units (RLU) of
-galactosidase activity per nanogram of total cellular protein. The
data are means ± standard deviations of three separate
determinations for three different production lots of each vector type.
(B) Livers of C57BL/6 mice infected with a low dose of Av3nBg or
Av4orf3nBg were evaluated quantitatively for
-galactosidase expression at 7 days postinjection by the same
procedure described for panel A. The data are means ± standard
deviations of three separate determinations with three different
animals.
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Recombinant adenovirus-mediated transduction and transgene
expression in mouse liver.
Based on the previous results that E4
ORF3 influences the activity of the RSV promoter in vitro, we wanted to
determine if E4 ORF3 would have a similar effect in vivo. To determine
the profiles of transgene expression, paired low and high doses
of Av4orf3nBg and Av3nBg (6 × 1010
and 3 × 1011 particles, respectively) were
administered to C57BL/6 mice by tail vein injection. At 7 days
postinjection, animals were sacrificed and liver tissues were analyzed
for vector content. We detected, using Southern blot analysis
that probed for the
-galactosidase gene, similar DNA copy numbers in
animals receiving either the Av3nBg or the Av4orf3nBg
vector (Fig. 4). Similarly, the
efficiencies of transduction based on
-galactosidase staining of
liver sections were not significantly different for any of the
adenoviral vectors tested when equivalent numbers of particles were
used. Only the intensity of the staining increased in cells transduced
with the Av4orf3nBg vector (Fig.
5). In fact, a quantification of
RSV-promoted
-galactosidase expression from the
Av4orf3nBg vector showed a fivefold increase compared
to the expression from cells infected with the Av3nBg vector (Fig. 3B).
Using Northern blot analysis, we then examined whether the
-galactosidase expression in vivo was directly correlated to the
amount of
-galactosidase mRNA present in liver tissues
(Fig. 6). Mice that received the
Av4orf3nBg vector showed on average a fivefold increase in
transgene transcription accumulation compared with that of mice
receiving the Av3nBg vector. Together, these results support the
concept that E4 ORF3 modulates expression of the RSV promoter and
further suggest that a gene product(s) of E4 other than ORF3 may
repress RSV promoter activity in vivo.

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FIG. 4.
In vivo detection of Av3nBg and Av4orf3nBg
transgene sequences. (A) Av4orf3nBg DNA is represented
schematically. Shown are the locations of the E2a, E3, and E4 deletions
and of the heterologous nucleus-localizing -galactosidase reporter
transgene as well as its BamHI digestion pattern. (B) Total
liver DNA of C57BL/6 mice infected with a high dose (3 × 1011 viral particles) of the infectious Av3nBg (lanes 4 to
7) or Av4orf3nBg (lanes 8 to 11) vector was isolated on day
7 following gene transfer and digested with BamHI. The
Southern blot was probed with a BamHI
32P-labeled fragment encoding the -galactosidase gene.
Lanes 1 and 2 contain pAv4orf3nBg plasmid DNAs equivalent to
10 copies and 1 copy per cell, respectively. The control sample
included liver DNA of naive mice (lane 3).
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FIG. 5.
Recombinant adenovirus-mediated transgene expression in
mouse liver. A low or high dose of the Av4orf3nBg or Av3nBg
vector (6 × 1010 or 3 × 1011 viral
particles, respectively) were injected into the tail vein of C57BL/6
mice. Seven days postinjection animals were sacrificed and liver
tissues were evaluated for -galactosidase expression by
immunohistochemical staining.
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FIG. 6.
In vivo detection of Av3nBg and Av4orf3nBg
transgene activities. Total liver RNA of C57BL/6 mice infected with a
high dose (3 × 1011 viral particles) of the
infectious Av3nBg (lanes 1 to 4) or Av4orf3nBg (lanes 6 to
9) vector was isolated on day 7 following gene transfer, transferred to
a nylon membrane, and hybridized with a 32P-labeled
lacZ probe. The control sample included liver RNA extracted
from a naive mouse (lane 5).
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Reduced mouse liver toxicity with the Av4orf3nBg
vector.
Previous analysis of early gene transcripts in vitro and
in vivo indicated that the E4 promoter was functional in an Av3nBg vector lacking E1 and E2a. The hypothesis in the present study was that
an additional E4 deletion in the Av3nBg vector would impart lowered
expression of early and late viral proteins and further attenuate viral
gene expression; the result could be to improve the in vivo utility of
this vector by reducing toxicity and the host immune response and
increasing the duration of transgene expression. Histochemical analysis
of hematoxilin- and eosin-stained liver sections of mice 7 days
postinjection of high and low doses of Av3nBg and Av4orf3nBg
are shown in Fig. 7. In a dose-dependent manner, Av3nBg caused vacuolization, nuclear pleomorphism, and a loss
of tissue architecture. These histopathologic changes were not observed
with Av4orf3nBg. However, both vectors produced mild inflammatory changes characterized by mononuclear cell infiltrates.

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|
FIG. 7.
Pathological response in liver following Av3nBg or
Av4orf3nBg vector administration. A low or high dose of the
Av4orf3nBg or Av3nBg vector (6 × 1010 or
3 × 1011 viral particles, respectively) was injected
into the tail veins of mice. Morphological observation of liver
sections prepared at 7 days postinjection was carried out after
hematoxylin and eosin staining. For consistency, liver samples from the
same mice used for the samples in Fig. 4 are shown here.
|
|
The toxicities of both Av3nBg and Av4
orf3nBg were also
quantified by determining levels of ALT in serum. Both vectors at low
and high doses resulted in elevation of the ALT levels at 24 h,
with a subsequent decrease by day 3 (Fig.
8). With the higher
vector dose of Av3nBg
the ALT levels increased significantly above
those of uninjected
control animals at day 7 (Fig.
8B). In contrast,
ALT levels in
Av4
orf3nBg-injected animals were not different from
those in
controls at day 7.

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|
FIG. 8.
Comparison of levels of liver injury between mice
infected with the Av3nBg vector and those infected with the
Av3orf3nBg vector. Serum samples from mice infused
with a low dose (A) or a high dose (B) of the Av3nBg or
Av4orf3nBg vector were harvested at the indicated time
points and analyzed for ALT concentrations. Numbers in parentheses are
the numbers of animals per point. For reference, the average normal
levels of ALT are shown.
|
|
 |
DISCUSSION |
Based on previous studies demonstrating that the E4 promoter is
still active in an E1 and E2a deletion vector (25), we
reasoned that an additional E4 deletion would further attenuate viral
gene expression and toxicity compared to levels produced by
double-deletion vectors. Thus, six of the seven ORFs were deleted from
the E4 region, with the exception of ORF3. This ORF was chosen for its ability to functionally complement a complete E4 region deletion such
as that in the dl1011 mutant virus (5). A
recombinant adenovirus vector with E1, E2a, and E4 deletions and
expressing a nucleus-targeted
-galactosidase reporter gene was
generated with a single plasmid system to transfect an A549-based cell
line that expresses E1 and E2a genes. Several reports have described the use of a plasmid containing a copy of the adenovirus genome to
rescue the virus after transfection (e.g., see references
19 and 39). In these previous
cases, plasmids were linearized before transfection to release an
adenovirus genome as an intact linear molecule with exposed ITRs. In
the present study, we also linearized the plasmid, but the right and
left ITRs were flanked by 2.0 and 0.5 kb, respectively, of extra
nucleotides. Virus production was subsequently performed in a
triple-complementation (E1, E2a, and E4) cell line, in which a
viral titer similar to those obtained with Av3-type vectors
(17) was achieved. DNA analysis performed on six
randomly selected amplified virus plaques and on total crude lysates
confirmed that the cloned viral genome was able to generate a stable
and full-length genome containing the appropriate deleted regions. The
fact that no rearrangements in DNA structure were observed between
virus stock and virus plaques suggests that little or no detectable
sequence instability is associated with this procedure. This and other
reports clearly demonstrate that this approach to generating adenoviral
vectors is faster and less tedious than the more traditional methods
which rely on homologous recombination in situ. The level and duration
of in vivo transgene expression measured from the RSV- and CMV-promoted
expression cassette in the adenovirus vectors appears to correlate with
the structure of the vector backbone. An interesting observation was made with adenovirus vectors lacking E1 and E4 in which the presence of
E4 gene products seemed to regulate the expression from both RSV and
CMV promoters (2, 6, 10). Transgene expression was observed
only with a vector that had a wild-type E4 region and not with vectors
that contained either a complete E4 deletion or a deletion of all of E4
except ORF6 (2). Our results with the Av4orf3nBg
vector indicate that ORF3 alone is able to enhance expression of
-galactosidase when the RSV promoter is used to drive transgene
expression in the mouse liver. We observed that the level of
-galactosidase expression was higher in animals receiving the
Av4orf3nBg than in those receiving the Av3nBg (wild-type E4)
vector. These observations suggest that an E4 product(s) competes with
ORF3 to affect expression or the accumulation of
-galactosidase in vivo. The molecular basis for ORF3 activation must
await further evaluation; however, preliminary analysis of
-galactosidase mRNA accumulation suggests that ORF3 may
act either directly or indirectly on the activity of the RSV promoter.
Both E1-E2a and E1-E4 double-deletion vectors have lower toxicity
profiles than a first-generation vector for liver-directed gene
therapy. Studies performed with murine models show reduced liver damage
as determined by serum transaminase levels. Based on the results of our
experiment, we speculate that the toxicity was biphasic. The first ALT
elevation observed for both vectors at day 1 may simply involve the
vector entering the liver, and ALT levels would be the same with both
vectors, or alternatively, this early hepatocellular toxicity may not
be related to capsid proteins but rather to nonspecific immune
mechanisms (27). The levels of ALT at day 7, which were
lower with Av4orf3nBg, may be related to reduced backbone
gene expression. This pattern of ALT elevation correlates well with the
reduced cytopathic effect observed in animal livers following vector
administration. Tail vein injection of Av3nBg in C57BL/6 mice resulted
in liver vacuolization, nuclear pleomorphism, and loss of tissue
architecture; none of the mice that received the Av4orf3nBg
vector demonstrated these pathological changes. This result was
expected by virtue of the known effects of E4 viral proteins on cell
toxicity. Among the many activities of E4 proteins are oncogenesis,
blocking of p53 function, modulation of cellular transcription factors,
induction of the cell cycle, and modification of protein phosphatase 2a activity (11, 23, 32, 33). Removal of these functions from
the adenovirus vector backbone will undoubtedly have an impact on cell
viability. However, since E4 ORF3 is active in the adenovirus vector
backbone, the effect of this protein needs to be evaluated in the
context of long-term vector persistence, especially on cell modulation,
since ORF3 alone may play a role in activating cellular RSV-like
promoters. In addition, recent data suggest that E4 ORF3 is directly
associated with the nuclear matrix, affecting the distribution of
essential transcription-replication factors in the nucleus (8,
12).
The host immune response following in vivo gene transfer with
adenovirus vectors is directed to both viral antigens and encoded transgene products (38). The contribution of a specific
viral or transgene antigen to the host immune response is very complex and seems to be species and strain dependent. Virus late gene products
are dominant antigens in C57BL/6 mice, whereas the transgene product
dominates in the C3H mice (3, 16). In this study both the
Av3nBg and the Av4orf3nBg vector behave similarly in C57BL/6 mice by their ability to induce mononuclear cell infiltrates. The interpretation of this result is not immediately evident because
-galactosidase expression is much higher in animals
injected with the Av4orf3nBg vector than in animals injected
with an E4-containing Av3nBg vector. This observation may imply that
transgene-directed cellular immune responses are more predominant
in adenovirus vectors whose virus-specific gene expression is
significantly reduced than in those whose virus-specific gene
expression is stable. Interestingly, C57BL/6 mice administered an
Av4nBg vector lacking E1, E2a, and E4 (attenuated by a complete removal
of the E4 promoter and expressing a
-galactosidase gene from an RSV
promoter) showed a lower level of transgene expression, a lower
toxicity, and a smaller amount of cell infiltrates than mice
administered the Av4orf3nBg vector (data not shown).
The above results exemplify the relationship between E4 viral proteins
and promoter regulation but more importantly suggest that attenuation
of E4 proteins in the vector backbone may reduce host antiviral
responses to the transduced cells. The existence of an interplay
between the immune responses to transgene and viral antigens was
documented in this model of liver-directed gene transfer
(10) and illustrates the impact that a reporter gene may
harbor when adenovirus vector backbone modifications are being
evaluated in vivo. Thus, a key issue in the further evaluation of a
triple-deletion adenovirus vector is to demonstrate persistent
transgene expression of a nonimmunogenic transgene in several mouse
strains and in large-animal models.
We describe in this study the construction of an adenovirus vector
lacking E1, E2a, and all of E4 except ORF3. This adenovirus vector can
be propagated to a high titer in a cell line that complements the
deleted viral functions, facilitating scale-up and purification steps. The vector has several clear advantages over a double-deletion vector: (i) additional deletion of E4 in a vector with previous E1 and
E2a deletions improves the safety and toxicity profile of the vector
and should decrease immunogenicity, (ii) rescue of
replication-competent adenovirus is unlikely, and (iii) the shortened
adenovirus vector backbone allows for larger insertions of foreign DNA
sequences. In addition, identification of ORF3 as the only E4 gene
product required to increase RSV promoter activity has important
implications for the design of other recombinant vectors. The impact of
this protein in long-term gene expression should be carefully investigated.
 |
ACKNOWLEDGMENTS |
We thank Robert Jambou for critical review of the manuscript. We
also thank Russette Lyons and Christoph Wey for assistance with the
animal procedures and Christine Mech for preparing liver sections and staining.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: DNA Viral Vector
Unit, Genetic Therapy, Inc., a Novartis Company, 938 Clopper Rd., Gaithersburg, MD 20879. Phone: (301) 258-4661. Fax: (301) 948-8034. E-mail: mario.gorziglia{at}pharma.novartis.com.
 |
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Journal of Virology, July 1999, p. 6048-6055, Vol. 73, No. 7
0022-538X/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
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