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Journal of Virology, July 1999, p. 5301-5308, Vol. 73, No. 7
0022-538X/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Human Memory Cytotoxic T-Lymphocyte (CTL) Responses to Hantaan
Virus Infection: Identification of Virus-Specific and
Cross-Reactive CD8+ CTL Epitopes on Nucleocapsid
Protein
Heather L.
Van Epps,1
Connie S.
Schmaljohn,2 and
Francis A.
Ennis1,*
Center for Infectious Disease and Vaccine
Research, University of Massachusetts Medical Center, Worcester,
Massachusetts 01655,1 and Virology
Division, U.S. Army Medical Research Institute of Infectious
Diseases, Fort Detrick, Frederick, Maryland
21701-50112
Received 19 January 1999/Accepted 24 March 1999
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ABSTRACT |
Hantaan virus, the prototypic member of the Hantavirus
genus, causes hemorrhagic fever with renal syndrome in humans. We
examined the human memory T-lymphocyte responses of three donors who
had previous laboratory-acquired infections with Hantaan virus. We demonstrated virus-specific responses in bulk cultures of peripheral blood mononuclear cells (PBMC) from all donors. Bulk T-cell responses were directed against either Hantaan virus nucleocapsid (N) or G1
protein, and these responses varied between donors. We established both
CD4+ and CD8+ N-specific cell lines from two
donors and CD4+ G1-specific cell lines from a third donor.
All CD8+ cytotoxic T-lymphocyte (CTL) lines recognized one
of two epitopes on the nucleocapsid protein: one epitope
spanning amino acids 12 to 20 and the other spanning amino acids 421 to
429. The CTL lines specific for amino acids 12 to 20 were restricted by
HLA B51, and those specific for amino acids 421 to 429 were restricted by HLA A1. The N-specific CTL lines isolated from these two donors included both Hantaan virus-specific CTLs and hantavirus cross-reactive CTLs. Responses to both epitopes are detectable in short-term bulk
cultures of PBMC from one donor, and precursor frequency analysis
confirms that CTLs specific for these epitopes are present at
relatively high precursor frequencies in the peripheral T-cell pool.
These data suggest that infection with Hantaan virus results in the
generation of CTL to limited epitopes on the nucleocapsid protein
and that infection also results in the generation of cross-reactive T-cell responses to distantly related hantaviruses which cause the
distinct hantavirus pulmonary syndrome. This is the first demonstration
of human T-lymphocyte responses to Hantaan virus.
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INTRODUCTION |
Hantaan virus, the prototype member
of the Hantavirus genus, causes hemorrhagic fever with renal
syndrome (HFRS) in humans. Hantaviruses are carried by rodents and are
spread to humans via inhalation of aerosolized virus particles which
are shed in the rodent feces and urine (7, 46). Infections
with Hantaan virus can range in severity from asymptomatic to a severe,
life-threatening illness characterized by fever, hemorrhage, and renal
failure. More than 100,000 cases of HFRS are reported yearly, with a
mortality rate of between 2 and 10% (16, 27, 42). Hantaan
virus, which was first isolated in Korea in 1978, is endemic primarily
in Asia and causes a relatively severe form of HFRS (28).
Other hantaviruses that also cause HFRS include Dobrava virus
(Balkans), Seoul virus (worldwide), and Puumala virus (Scandinavia and
Europe). Dobrava virus is also associated with a relatively severe form
of HFRS, while Seoul and Puumala viruses cause more mild disease
(16, 33). Recent outbreaks of related hantaviruses in the
southwestern United States and South America (e.g., Sin Nombre and
Andes viruses) have resulted in the isolation of a newly recognized
group of hantaviruses that cause a fatal pulmonary syndrome, hantavirus pulmonary syndrome (HPS) (31, 37, 53). HFRS and HPS are distinct in the predominant target organ of virus infection (kidney versus lung) but have important clinical features in common, including fever, thrombocytopenia, and a capillary leak syndrome. These common
clinical manifestations suggest that the underlying mechanisms of
disease may be similar in the two syndromes.
The pathogenesis of hantavirus infections is not understood. Hantaan
virus infects primary human endothelial cells as well as kidney
glomerular cells and monocytes in vitro but does not have any direct
cytopathic effect on these cells (40, 52). Autopsy samples
from individuals with Sin Nombre virus infection show evidence of
predominant infection of alveolar microvascular endothelial cells
without apparent cytopathic effect (54). It is thus unlikely
that direct viral cytotoxicity is the primary cause of pathology in
vivo. In many other viral infections, virus-specific cytolytic T-cell
responses have been shown to be involved in both clearance of virus and
induction of immunopathology (5, 9, 21, 36, 48). This may
also be the case in hantavirus infections. Recent studies of Hantaan
and related virus infections suggest a role for the cellular immune
response in the pathology of HFRS. Evidence supporting a role for the
immune response in the pathology of disease includes increases in the
number of activated, circulating CD8+ cells in patients
with acute HFRS (18), the presence of infiltrating lymphocytes (predominantly CD8+ T cells) in kidney biopsies
from patients with acute Puumala virus infections (34, 51),
and increases in production of cytokines such as tumor necrosis factor
alpha, gamma interferon (IFN-
), IFN-
, and interleukin-6 (IL-6) in
both the kidneys and peripheral blood of patients with acute Hantaan
virus infections (23, 29, 51). The presence of activated
lymphocytes in the kidneys of infected individuals may result in local
or systemic increases in production of cytokines and other inflammatory
mediators which may, in turn, contribute to the capillary leak syndrome and kidney damage characteristic of HFRS. Further, a recent study by
Mustonen et al. (35) demonstrated a correlation between
severe disease caused by Puumala virus infection and HLA type B8, DR3. A similar correlation has been observed between HLA B35 and increased severity of Sin Nombre virus-induced HPS (22). These
findings suggest a role for T lymphocytes in exacerbating disease and
support a potential role for the cellular immune response in the
pathology of both HPS and HFRS.
An understanding of the mechanisms underlying HFRS pathology will be
important both in improving the diagnosis and treatment of infected
individuals and in the design of vaccine strategies. Little is known
about the specific cellular immune responses to hantavirus infections.
Our laboratory has previously described three cytolytic T-cell clones
isolated from the peripheral blood of patients with hantavirus
pulmonary syndrome caused by Sin Nombre virus infection
(12). In the present study, we examine the memory T-cell
responses of three donors who had previous laboratory-acquired infections with Hantaan virus. We demonstrate virus-specific responses in bulk cultures of peripheral blood mononuclear cells (PBMC) from each
of these donors. Bulk T-cell responses were directed against Hantaan
virus nucleocapsid (N) and/or G1 proteins, and these responses varied
in specificity between individuals. We established both
CD8+ and CD4+ N-specific cell lines from two
donors and CD4+ G1-specific cell lines from the third
donor. All CD8+ cytotoxic T-lymphocyte (CTL) lines isolated
recognize one of two epitopes on the nucleocapsid protein; one
epitope is located at the N-terminal region of the protein and
spans amino acids 12 to 20, and the other spans the C-terminal nine
amino acids of the protein (421 to 429). All CTL lines specific for
amino acids 12 to 20 were restricted by HLA B51, and those specific for
amino acids 421 to 429 were restricted by A1. The memory CTL response
detected in these immune individuals included both Hantaan virus-specific T-cell responses and hantavirus cross-reactive responses. This is the first demonstration of Hantaan virus-specific human CD8+ and CD4+ T-cell responses.
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MATERIALS AND METHODS |
PBMC donors.
Donors were American scientists who became
infected with the Hantaan virus strain 76-118 10 to 15 years prior to
the study. Infections were subclinical and were confirmed by detection
of Hantaan virus-specific immunoglobulin in the serum. The HLA types of
these donors are as follows: donor A, A1, A2, B35, B51, Cw4, Cw7, DR2,
DR3, DQ2, DQ6, and DRw52; donor B, A2, A11, B39, B60, Cw3, Cw12, DR4,
DR9, DQ3, and DRw53; donor C, A1, A11, B8, B51, Cw7, Cw15, DR7, DR11,
DQ3, DRw52, and DRw53.
Human PBMC.
PBMC were purified by Ficoll-Hypaque density
gradient centrifugation. Buffy coats were recovered, and mononuclear
cells were resuspended at 5 × 106 to 8 × 106/ml in RPMI 1640-20% fetal bovine serum (FBS)-10%
dimethyl sulfoxide and cryopreserved until needed.
B lymphoblastoid cell lines (BLCL).
PBMC (1 × 106 to 4 × 106) were cultured in RPMI
1640 supplemented with penicillin, streptomycin,
L-glutamine, HEPES, and 20% FBS in the presence of a 1:3
dilution of Epstein-Barr virus from B95-8 cells (American Type Culture
Collection) in 24-well flat-bottom plates (Costar) as previously
described (8). Cyclosporine was added at 1 µg/ml to
inhibit proliferation of T lymphocytes.
In vitro stimulation of PBMC.
PBMC (2 × 106 to 5 × 106) were resuspended in 1 ml
of AIM/V (Gibco)-10% human AB serum in a single well of a 24-well
plate (Costar). A gamma-irradiated, inactive Hantaan virus preparation
was added at a 1:160 final dilution. Hantaan virus was grown in Vero E6 cells (American Type Culture Collection) and purified as described previously (45). The purified virus was then gamma
irradiated (8 × 106 rads) to inactivate the virus.
Inactivation of the virus was confirmed by plaque assay. Recombinant
human IL-2 (20 U/ml) was added on day 4 to 5 in 1 ml of fresh
AIM/V-10% human AB serum, and the medium was replenished every third
day thereafter. Bulk culture 51Cr release assays were
performed between days 7 and 14 of culture. Donor A PBMC were
restimulated on day 7 with inactivated Hantaan virus (1:160) and 2 × 106 to 3 × 106 gamma-irradiated
autologous PBMC. Recombinant IL-2 was added to these cultures on day
11, and cultures were tested on day 14. Donor A PBMC were restimulated
in order to reduce nonspecific background lysis.
CTL lines.
Hantaan virus-specific CTL lines were established
by limiting-dilution plating as described previously (25).
In vitro-stimulated PBMC were plated at 1, 3, 10, or 30 cells/well in a
96-well, round-bottom plate (Costar) in 0.2 ml of AIM/V-10% FBS and
stimulated with anti-CD3 antibody (12F6) and gamma-irradiated
allogeneic PBMC as feeder cells. Medium was replenished every 3 days,
and wells were restimulated with 12F6 and gamma-irradiated feeder cells every 14 days. Individual wells were tested for recognition of targets
expressing Hantaan virus proteins in a 51Cr release assay,
and positive wells were expanded and restimulated as described above.
Surface expression of CD4 and CD8 was determined by flow cytometry with
fluorescein isothiocyanate-conjugated antibodies (Becton Dickinson).
Hmy cell lines.
Hmy2.C1R (Hmy) is a human plasma cell line
that lacks endogenous HLA A and -B antigens (50). Hmy cell
lines transfected with B35 or B51 were generated as described
previously (15, 38) and were kindly provided by Masafumi
Takaguchi (University of Tokyo, Tokyo, Japan).
Recombinant vaccinia viruses.
Recombinant vaccinia viruses
expressing Hantaan virus genes were constructed as described previously
(44). The recombinant vaccinia viruses used in this study
were derived from the WR strain of vaccinia virus and express either
individual Hantaan virus genes encoding G1, G2, or nucleocapsid
(denoted vac-G1, vac-G2, and vac-N, respectively) or all three genes
simultaneously (denoted vac-G1+G2+N).
Synthetic peptides.
Seventy Hantaan nucleocapsid peptides
that spanned the entire published sequence of the Hantaan nucleocapsid
protein (47) (GenBank accession no. M14626) were
synthesized. Peptides were 15 amino acids in length and overlapped by 9 amino acids. N protein peptides from other hantavirus strains were
synthesized based on published sequences and included Seoul
(1) (accession no. M34881), Sin Nombre (10)
(accession no. L37904), Prospect Hill (39) (accession no.
M34011), Andes (32) (accession no. AF004660), Puumala
(49) (accession no. M32750), New York-1 (17)
(accession no. U47135), Dobrava (4) (accession no. L41916),
and Convict Creek (43) (accession no. L33683) viruses.
Peptides were synthesized at the Protein Chemistry Core Facility at the
University of Massachusetts Medical Center with an automated Rainin
Symphony peptide synthesizer.
Preparation of target cells. (i) Virus-infected targets.
Autologous or allogeneic (for major histocompatibility complex [MHC]
restriction analysis) BLCL were infected with recombinant vaccinia
viruses at a multiplicity of infection of 15 for 60 min at 37°C. The
cells were then diluted in 1 ml of RPMI 1640-10% FBS for an
additional 12 to 16 h. Target cells were then labeled with 0.25 mCi of 51Cr for 60 min at 37°C. Following labeling, the
cells were washed three times and resuspended at 2 × 104/ml in RPMI-10% FBS.
(ii) Peptide-pulsed targets.
Uninfected BLCL were
51Cr labeled as described above. Labeled cells were
incubated with 25 µg of peptide per ml in 96-well round-bottom plates
at 1 × 103 to 2 × 103/well for 30 min at 37°C before addition of effector cells. The peptides remained
in the wells for the duration of the assay.
51Cr release assay.
In vitro-stimulated effector
cells were added to 2 × 103 51Cr-labeled
target cells at various effector cell/target cell (E/T) ratios. For CTL
assays with synthetic peptides, T-cell lines or clones were added to
1 × 103 to 2 × 103
51Cr-labeled, peptide-pulsed targets at an E/T ratio of
10:1 (unless otherwise specified). Plates were incubated for 4.5 h
at 37°C, supernatants were harvested (Skatron Instruments, Sterling,
Va.), and specific lysis was calculated as [(experimental release
spontaneous release)/(maximum release
spontaneous release)] × 100. All assays were performed in triplicate. All experiments were
performed at least twice. Negative controls included target cells
infected with wild-type vaccinia virus or unpulsed target cells.
Spontaneous lysis was <25% in all assays.
Enzyme-linked Immunospot (ELISPOT) assay for single-cell IFN-
secretion.
ELISPOT assays were performed as described previously
(26). Briefly, 96-well filtration plates (MAIP S 45;
Millipore, Bedford, Mass.) were coated with 15 µg of mouse anti-human
IFN-
monoclonal antibody (clone N1B42; Pharmingen, San Diego,
Calif.) per ml. PBMC were incubated for 24 h in RPMI-10% FBS
with no stimulation and added at 2 × 105 cells/well
in RPMI 1640-10% FBS. Peptides were added at 25 µg/ml, and plates
were incubated for 18 to 20 h at 37°C. Biotinylated mouse
anti-human IFN-
monoclonal antibody (clone 4S.B3; Pharmingen) was
then added and left for 2 h at room temperature, followed by a
1:400 dilution of streptavadin alkaline phosphatase for 45 min.
Substrate (3-amino-9-ethyl-carbazole-0.15%
H2O2) was added and left for 10 min at room
temperature. The precursor frequency was calculated as number of
visible spots/total number of cells per well. Experiments were
performed in triplicate.
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RESULTS |
Protein specificity of CTL lines generated from the PBMC of Hantaan
virus-immune donors.
PBMC from three Hantaan virus-immune donors
were stimulated in vitro for 7 to 14 days with an inactivated Hantaan
virus preparation. These bulk cultures were then tested for specific
lysis of autologous BLCL target cells infected with vaccinia virus
recombinants expressing one or more Hantaan virus proteins. Stimulated
PBMC from donor A recognized target cells expressing the nucleocapsid
(N) protein, including those infected with vac-N and vac-G1+G2+N (Fig.
1). Lysis of target cells expressing the
N protein was relatively low (18 to 27%) but was consistently higher
than killing of targets infected with wild-type vaccinia virus (<7%).
PBMC from donor B consistently displayed lysis of targets expressing
the G1 glycoprotein (vac-G1 and vac-G1+G2+N) (Fig. 1). Donor B PBMC
also displayed transient, low-level recognition of the nucleocapsid
protein, although the killing of targets expressing G1 was always
higher than that of targets expressing N. PBMC from donor C
consistently recognized targets expressing the Hantaan virus N protein
(Fig. 1). In summary, the above data show that PBMC from donors A and C
recognized targets expressing the nucleocapsid protein while PBMC from
donor B lysed targets expressing G1. We were unable to detect responses
specific for the G2 glycoprotein in the PBMC from any of these donors.

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FIG. 1.
Bulk culture recognition of Hantaan virus proteins. PBMC
(2 × 106 to 5 × 106/well) were
stimulated for 7 to 14 days with a gamma-irradiated Hantaan virus as
described in Materials and Methods. Target cells were autologous BLCL
infected with recombinant vaccinia viruses expressing one or more
Hantaan virus proteins. Vaccinia recombinants used to infect targets
(shown on the x axis) express individual Hantaan virus
proteins (vac-G1, -G2, and -N) or a combination of G1, G2, and N
(vac-G1+G2+N). Lysis of targets infected with wild-type vaccinia virus
served as a negative control. E/T ratio, 80. Data from a representative
experiment are shown.
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When T-cell lines were cloned from the PBMC of these donors, the CTL
lines isolated from each donor were specific for the protein that was
consistently recognized in bulk culture. A summary of representative
T-cell lines isolated from these donors is shown in Table
1. Both CD8+ and
CD4+ T-cell lines specific for the N protein were isolated
from PBMC from donors A and C. In contrast, only CD4+
T-cell lines specific for the G1 glycoprotein were detected in the PBMC
from donor B. Although low-level recognition of targets expressing the
N protein was seen in the bulk PBMC cultures from donor B, we were not
able to isolate cell lines that recognize this protein. These data
demonstrate that Hantaan virus-specific T-cell responses are readily
detectable in the PBMC of these immune individuals and that responses
are directed primarily against the viral N protein and the G1
glycoprotein. The bulk culture responses as well as the specificity and
phenotype (CD4/CD8) of the virus-specific T-cell lines varied between
individuals.
Peptide specificities of CD8+ CTL lines generated from
the PBMC of Hantaan virus-immune donors A and C.
To identify the
specific peptide on the N protein recognized by these CD8+
CTL lines, each cell line was tested in a 51Cr release
assay against targets pulsed with a series of 70 overlapping peptides
spanning the entire Hantaan virus nucleocapsid sequence. The 15-mer
peptides recognized by the CD8+ CTL lines of the two donors
are shown in Table 2. Interestingly, all
N-specific CTL lines isolated from donors A and C recognized one of two
15-mer peptides on the nucleocapsid protein. CTL lines 3-G7 and 10-E2
from donor A and 3A-G3 from donor C recognized targets pulsed with a
nucleocapsid peptide which is located at the amino terminus of the
protein and spans amino acids 7 to 21 (LQREINAHEGQLVIA). CTL line 1-C8
from donor A and lines 1A-B7, 3A-B8, 3A-C4, and 3A-C10 from donor C
recognized targets pulsed with a peptide which is located at the
extreme carboxy terminus of the protein and spans amino acids 416 to
429 (VKVKEISNQEPLKL). Subsequent screening of numerous other cell lines
resulted in the isolation of additional CTL lines that recognize one or
the other of these peptides (data not shown).
Once the nucleocapsid peptides (15-mers) recognized by the CTL lines
were identified, sequential N- and C-terminal truncations of the
peptides were synthesized and tested in similar 51Cr
release assays. The patterns of peptide recognition of representative clones from each donor are shown in Fig.
2 and 3.
The clones specific for nucleocapsid peptide 7-21 (donor A, 3-G7 and
10-E2; donor C, 3A-G3) were all found to recognize a minimal 9-mer
peptide spanning amino acids 12 to 20 (NAHEGQLVI). A representative
CTL line from each donor is shown in Fig. 2A and C. These cell lines required comparable peptide concentrations for target cell recognition (Fig. 3A). The CTL lines specific for the nucleocapsid peptide 416-429 (donor A, 1-C8; donor C, 1A-B7, 3A-B8, 3A-C4, and 3A-C10) were all
found to recognize a minimal 9-amino-acid epitope at the extreme
carboxy terminus of the protein spanning amino acids 421 to 429 (ISNQEPLKL). Data from representative CTL lines from both donors are
shown in Fig. 2B and D. These CTL lines required similar peptide
concentrations for target cell recognition, with the exception of CTL
lines 1A-B7 and 3A-C4, which required a slightly higher peptide
concentration for optimal target recognition (Fig. 3B).

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FIG. 2.
Localization of CTL epitopes on Hantaan virus
nucleocapsid protein recognized by representative cell lines isolated
from donors A and C. Target cells were autologous BLCL infected with
either a recombinant vaccinia virus expressing Hantaan virus N protein
or wild-type vaccinia virus or pulsed with the indicated peptide at 25 µg/ml. E/T ratio, 10.
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FIG. 3.
Peptide dose-response curves for N-protein-specific cell
lines isolated from donors A and C. Autologous BLCL were pulsed with an
optimal 9-mer peptide epitope recognized by the T-cell lines at the
indicated concentrations (Conc.). (A) Cell lines from donors A and C
specific for N protein amino acids 12 to 20. (B) Cell lines specific
for N protein amino acids 421 to 429. Data from a representative
experiment are shown.
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MHC restriction of nucleocapsid-specific CD8+ CTL
lines.
HLA restriction of the CD8+ CTL lines was
determined by testing each CTL line against a panel of partially
HLA-matched allogeneic BLCL infected with a vaccinia virus recombinant
expressing the Hantaan virus N protein. To ensure that lysis of the
allogeneic targets was not due to recognition of an allogeneic or
vaccinia determinant, each target cell line was also infected with
wild-type vaccinia virus and tested in the same assay. In all assays,
specific lysis of targets infected with wild-type vaccinia was negative (data not shown). The results of the HLA restriction analysis of
representative CTL lines isolated from donors A and C are shown in Fig.
4.

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FIG. 4.
MHC restriction of T-cell lines from donors A and C. T-cell lines were tested in a CTL assay against a panel of partially
HLA-matched allogeneic target cells infected with a recombinant
vaccinia virus expressing the Hantaan virus N protein. The HLA alleles
shared by the donor and the allogeneic target cell are shown on the
y axis. Data from a representative experiment are shown. E/T
ratio, 10.
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All of the CD8+ CTL lines generated from donor A recognized
and lysed allogeneic targets expressing both HLA A1 and B51 (Fig. 4A
and B and data not shown). CTL lines 3-G7 and 10-E2, which recognize
N(12-20), also recognize an Hmy-2C1R cell line expressing only HLA B51,
indicating that these CTL lines are restricted by HLA B51 (Fig. 4A and
data not shown). CTL line 1-C8, which recognizes N(421-429), did not
recognize the Hmy-B51 target cells. Since this cell line also
recognizes targets expressing both A1 and B51 or A1 alone, this cell
line is restricted by HLA A1 (Fig. 4B).
Donor C CTL line 3A-G3, which is specific for N(12-20), recognizes only
targets that express B51, including the Hmy-2C1R-B51 cell line (Fig.
4C), thus definitively demonstrating that CTL line 3A-G3 is restricted
by B51. CTL lines 1A-B7, 3A-B8, 3A-C4, and 3A-C10 from donor C, which
are all specific for N(421-429), recognized allogeneic targets
expressing both A1 and A11, A1 and B8, and A1 and B51 (Fig. 4D and data
not shown) but did not recognize other targets expressing A11, B8, or
B51 alone, indicating that these cell lines are all restricted by HLA A1.
In summary, CTL lines from both donors that recognize the N-terminal
nucleocapsid epitope [N(12-20)] are restricted by HLA B51, while
CTL lines that recognize the C-terminal nucleocapsid epitope
[N(421-429)] are restricted by HLA A1.
Cross-reactivity of Hantaan virus CTL lines against other
hantavirus N proteins.
Little is known about cross-reactive
immunity between different hantaviruses. The hantavirus N proteins have
an overall sequence identity of 50%, although specific regions of the
protein are more highly conserved (e.g., the C-terminal 100 amino acids
are 85% identical). Closely related hantaviruses, such as Hantaan and
Seoul viruses, have nucleocapsid proteins that are 82% identical. The
high level of sequence identity suggests that hantavirus infection may
result in the development of immune responses that are cross-reactive among numerous hantaviruses. To test whether the CTL lines were cross-reactive with other hantaviruses, we tested the CTL lines for
recognition of targets infected with a recombinant vaccinia virus
expressing the Sin Nombre virus N protein. The CTL lines were also
tested against targets pulsed with corresponding 9-mer peptide
epitopes from various other hantaviruses which were synthesized based on published sequences.
The CD8+ CTL lines that recognize the N-terminal
nucleocapsid epitope (donor A, 3-G7 and 10-E2; donor C, 3A-G3) do
not recognize target cells infected with a recombinant vaccinia virus
expressing the Sin Nombre virus N protein or targets pulsed with 9-mer
peptides representing the corresponding epitope from various other
hantaviruses, including Sin Nombre, Dobrava, Prospect Hill, Andes, and
Puumala viruses (Fig. 5 and
6A). This epitope is variable among
the different hantaviruses, differing by up to four amino acids (Fig.
6A). The Dobrava virus peptide varies by only one amino acid (A2
N)
from the Hantaan virus epitope but is not recognized by any of the CTL lines (Fig. 6). The Seoul virus peptide also varies by only one
amino acid from the Hantaan virus epitope (N1
S) and is
recognized by CTL lines 3-G7 and 3A-G3 but not by 10-E2 (Fig. 6A).

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FIG. 5.
Recognition of Sin Nombre virus nucleocapsid protein by
Hantaan virus N protein-specific T-cell lines from donors A and C. T-cell lines were tested in a CTL assay against autologous BLCL
infected with recombinant vaccinia viruses expressing Hantaan virus N
protein or Sin Nombre virus N protein or infected with a wild-type
vaccinia virus control. E/T ratio, 10.
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FIG. 6.
Cross-reactivity of CTL lines against epitopes from
other hantavirus N proteins. CTL lines were tested against autologous
BLCL targets pulsed with the Hantaan virus epitope or the
corresponding epitope from other hantavirus N proteins (25 µg/ml). Amino acids that differ from the corresponding amino acid in
the Hantaan virus epitope sequence are shown in boldface. E/T
ratio, 10. SEO, Seoul virus; DOB, Dobrava virus; PH, Prospect Hill
virus; AND, Andes virus; PUU, Puumala virus; SNV, Sin Nombre virus. (A)
CTL lines specific for N protein amino acids 12 to 20. (B) CTL lines
specific for N protein amino acids 421 to 429. Cell lines 1-C8 (donor
A) and 3A-C10 (donor C) showed a pattern of peptide recognition
identical to that of cell line 3A-B8 (donor C).
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The CTL lines specific for the C-terminal nucleocapsid epitope
421-429 (donor A, 1-C8; donor C, 1A-B7, 3A-B8, 3A-C4, and 3A-C10) all
recognized targets infected with a vaccinia virus recombinant expressing the Sin Nombre virus nucleocapsid protein (Fig. 5). It is
not surprising that these CTL lines are cross-reactive with the Sin
Nombre virus nucleocapsid, since the epitope is identical in the
two viruses (ISNQEPLKL). This epitope is also identical in other
hantaviruses, including Andes, NY-1, Dobrava, and Convict Creek
viruses. This C-terminal epitope in Puumala, Prospect Hill, and
Bayou viruses differs by one amino acid, with a conservative Leu-to-Ile
change at position 9. Four of the five CTL lines isolated recognized
this epitope (donor A, 1-C8; donor C, 1A-B7, 3A-B8, and 3A-C10)
(Fig. 6B and data not shown). The epitope in Seoul virus also
differs from the Hantaan virus epitope by one amino acid, with a
Leu-to-Met change at position 7. Three of the five CTL lines lysed
targets pulsed with this peptide epitope, with cell lines 1A-B7 and
3A-C4 failing to recognize and lyse these targets (Fig. 6B and data not shown).
Recognition of nucleocapsid epitopes by T cells in 7-day bulk
cultures.
The Hantaan virus-specific clones isolated from donors A
and C are all specific for one of two epitopes on the nucleocapsid protein. In order to address the in vivo significance of these epitopes, we tested recognition of these epitopes in short-term bulk cultures from donor C. Seven-day bulk cultures of donor C PBMC
demonstrated significant recognition of both peptide epitopes, with
the N-terminal epitope (amino acids 12 to 20) being recognized at
levels comparable to that of the whole N protein (vac-N) (Fig. 7). Precursor frequency analysis
confirms that T cells recognizing these two epitopes are
present at relatively high frequencies in the peripheral T-cell pool.
Single cell IFN-
secretion analysis (ELISPOT assay) of donor C
PBMC indicates that T cells specific for N(12-20) have a frequency
ranging from 1 per 7,326 to 1 per 8,968 PBMC, and T cells
specific for N(421-429) have a frequency ranging from 1 per 18,181 to 1 per 19,417 PBMC.

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|
FIG. 7.
Recognition of Hantaan virus proteins and CTL
epitopes in short-term bulk culture of PBMC from donor C. PBMC
(2 × 106 to 5 × 106) were
stimulated in vitro with a gamma-irradiated Hantaan virus for 7 days.
Bulk culture cells were tested on day 7 against autologous BLCL targets
either infected with recombinant vaccinia viruses expressing Hantaan
virus proteins (vac-G1, -G2, -N, and -G1+G2+N) or pulsed with the
indicated peptides at 25 µg/ml. E/T ratio, 80.
|
|
 |
DISCUSSION |
In this study, we have analyzed virus-specific memory T-cell
responses in three donors who had previous laboratory-acquired infections with Hantaan virus, the prototype hantavirus. In bulk culture, PBMC from two donors (donors A and C) recognized only targets
expressing nucleocapsid protein, while PBMC from the third donor (donor
B) recognized targets expressing the G1 glycoprotein. The detection of
CD8+ T-cell responses in two of three donors following
stimulation with an inactivated virus suggests that the viral proteins
were able to access the class I MHC peptide presentation pathway
following endocytosis of the inactive virus. Priming of
CD8+ CTL by inactivated virus has also been demonstrated in
other virus systems, including influenza and Sendai viruses (6,
30). This is the first demonstration of specific human T-cell
responses to Hantaan virus.
The clear differences in protein recognition among Hantaan virus-immune
donors suggests that the nature and composition of the immune response
against the virus vary between individuals, possibly due to differences
in HLA haplotypes. In one donor, CTL responses were directed primarily
against the G1 glycoprotein. The CD4+, G1-specific CTL
lines isolated from this donor did not recognize autologous targets
infected with a recombinant vaccinia virus expressing the Sin Nombre
virus G1 protein (data not shown). This is not surprising, since the
hantavirus glycoproteins are less conserved than the nucleocapsid
proteins. In two of three donors, CTL responses were directed
primarily against the N protein. Interestingly, our laboratory
has previously isolated N-specific CTL from donors with hantavirus
pulmonary syndrome caused by Sin Nombre virus infection
(12). We did not detect CTL responses specific for the G2
glycoprotein in any of the donors. We were unable to examine CTL
recognition of the viral polymerase (L protein), because we do not have
a vaccinia virus recombinant expressing this gene product.
It is possible that memory responses against other viral proteins or
nucleocapsid peptides are present in these individuals but are not
prevalent enough to detect following short-term culture. It is also
possible that the use of inactivated virus led to preferential stimulation of T cells specific for the two epitopes described. Both epitopes are located at the termini of the nucleocapsid
protein, potentially allowing them to be more readily degraded and
presented on MHC class I molecules than more internal peptides.
However, the facts that both epitopes described here are detectable
in short-term bulk cultures and that T-cell precursors specific for these epitopes have high precursor frequencies in PBMC from donor C
suggest that these CTL lines are prevalent in the peripheral T-cell
pool and are thus likely to play a role in the in vivo immune response.
In addition, subsequent attempts to identify other CTL lines resulted
in the repeated isolation of CTL lines specific for the two
epitopes described here.
The three CTL lines specific for amino acids 12 to 20 (NAHEGQLVI) are all restricted by HLA B51 and are either
Hantaan virus specific or recognize only the very similar Seoul virus
epitope. The consensus motif for peptides binding to HLA B51
consists of anchor residues at positions 2 (A, P, or G) and 9 (L, V, or
I) (41). This Hantaan virus N peptide fits the consensus B51
peptide binding motif with an alanine (A) at position 2 and an
isoleucine (I) at position 9. It is not surprising that the clones
specific for this epitope fail to recognize the corresponding
regions of other hantaviruses, since this region of the nucleocapsid
protein is quite variable among different viruses, with many of the
amino acid differences occurring at the anchor positions for HLA
binding (Fig. 6A). The corresponding epitope from Dobrava virus
differs from the Hantaan virus epitope by only one amino acid.
However, the amino acid change in the Dobrava virus epitope is
located at anchor position 2 (A13
N). It is interesting that the HLA
B51 is very common among populations in Asia, where Hantaan virus is
endemic, being present in 8 to 12% of the population (19).
The CTL lines that recognize the C-terminal nine amino acids of the
nucleocapsid protein (421 to 429: ISNQEPLKL) are restricted by HLA A1
and are cross-reactive against several different hantavirus sequences.
Interestingly, this peptide does not fit the consensus HLA A1 binding
motif in which an acidic residue (D or E) is preferred at position
three and a tyrosine (Y) is highly preferred at anchor position 9 (11, 41). This epitope is identical among
various hantaviruses, including Sin Nombre, Andes, NY-1,
Dobrava, and Convict Creek viruses, and differs from the Puumala,
Prospect Hill, and Bayou virus epitope by a single conservative
change at position 9 (L429
I). The corresponding epitope
from Seoul virus also differs by one amino acid, with a substitution at
position 7 (L427
M). The sequence conservation at this epitope
and the recognition of target cells expressing Sin Nombre virus N
protein by CTL suggest that infection with Hantaan virus induces some cross-reactive T-cell responses. This cross-reactive epitope is particularly interesting in that it is identical not only among closely
related viruses that cause HFRS (e.g., Hantaan and Dobrava viruses) but
also among viruses that are more distantly related and cause distinct
syndromes (e.g., Hantaan and Sin Nombre viruses). The restricting
allele for this CTL epitope, HLA A1, is very common in North
American Caucasian populations (17 to 19%) but is relatively rare
among Asian populations (0.5 to 5%) (19).
There is no existing evidence to indicate whether a person who has been
infected with one type of hantavirus may be reinfected with the same or
a different type of hantavirus. The data presented here demonstrate
that infection with Hantaan virus results in the development of both
Hantaan virus-specific and hantavirus cross-reactive T-cell responses.
Similarly, the Sin Nombre virus-specific CTL lines established in our
laboratory included both Sin Nombre virus-specific and cross-reactive
lines (12). This pattern is also similar to that seen in
individuals who received a live, attenuated dengue virus immunization,
in which some T-cell responses are dengue virus serotype specific and
some are serotype cross-reactive and/or cross-reactive with other
flaviviruses (13, 14, 24). The existence of cross-reactive
responses suggests that infection with one hantavirus may confer a
limited degree of protection against illness caused by other types of
hantavirus, even those more distantly related to the original infecting
strain. Murine studies have demonstrated that immunization with one
type of hantavirus elicits protective CTL responses that are
cross-reactive with other hantaviruses (2, 3). This is the
first demonstration that cross-reactive CTL responses are also
generated in humans following infection with Hantaan virus. In addition
to providing protection against subsequent infection, it is also
possible that activation of cross-reactive memory T cells may be
deleterious in the event of reinfection by contributing to excessive
activation of the immune response and resulting immunopathology. Kidney
damage during acute HFRS may be caused, in part, by T-cell-mediated
immunopathology. T lymphocytes (primarily CD8+) have been
detected infiltrating the kidneys of patients with acute HFRS (34,
51). However, no work has been done to assess the specificity or
effector functions of these cells. Human immunodeficiency virus-specific CD8+ cytolytic T lymphocytes have been
isolated from human immunodeficiency virus-positive patients with
neurologic disorders. It has been suggested that these cytotoxic T
lymphocytes may contribute to the neurologic pathology seen in these
patients (48).
The two epitopes identified in this study were recognized by
short-term PBMC cultures that were stimulated with an inactivated Hantaan virus preparation and were shown to have high precursor frequencies in one donor. The precursor frequencies of CTL specific for
these epitopes are similar to those detected for several
immunodominant epitopes identified from influenza virus (20,
26). This indicates that T cells specific for these epitopes
are present in relatively high numbers in the peripheral T-cell pool of
these Hantaan virus-immune donors and are thus likely to play a role in
vivo. It will be interesting to determine whether other immune
individuals who share HLA alleles A1 and/or B51 have a memory T-cell
response dominated by cells specific for these epitopes. Also,
studies analyzing PBMC from naturally infected individuals should be
carried out to determine if the immune response to natural infection is focused on a single viral protein and/or a few dominant epitopes, as these limited studies in individuals who had laboratory-acquired infections suggest.
In conclusion, we have demonstrated CD4+ and
CD8+ hantavirus-specific CTL responses in three donors who
had previous laboratory-acquired infections with Hantaan virus. The
identification of specific T-cell responses in hantavirus infection is
essential to both the understanding of the mechanisms involved in
recovery from and pathology of infection and the design of vaccine strategies.
 |
ACKNOWLEDGMENTS |
We thank Alan Rothman for critical review of the manuscript,
Julie Jameson for assistance with ELISPOT assays, and Jurand Janus for
propagation of recombinant vaccinia viruses. We also thank the
scientists who generously donated blood for this study.
This work was supported by NIH grants AI39780 and AI07349.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Center for
Infectious Disease and Vaccine Research, University of Massachusetts
Medical Center, 55 Lake Ave. North, Worcester, MA 01655. Phone: (508) 856-4182. Fax: (508) 856-4890. E-mail:
Francis.Ennis{at}umassmed.edu.
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Journal of Virology, July 1999, p. 5301-5308, Vol. 73, No. 7
0022-538X/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
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