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Journal of Virology, April 1999, p. 3246-3257, Vol. 73, No. 4
0022-538X/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Analysis of the Phosphorylation Sites of Herpes
Simplex Virus Type 1 Regulatory Protein ICP27
Yan
Zhi and
Rozanne M.
Sandri-Goldin*
Department of Microbiology and Molecular
Genetics, University of California, Irvine, California 92697-4025
Received 31 July 1998/Accepted 14 January 1999
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ABSTRACT |
The herpes simplex virus type 1 (HSV-1) regulatory protein ICP27 is
a 63-kDa phosphoprotein required for viral replication. ICP27 has been
shown to contain both stable phosphate groups and phosphate groups that
cycle on and off during infection (K. W. Wilcox, A. Kohn, E. Sklyanskaya, and B. Roizman, J. Virol. 33:167-182, 1980). Despite
extensive genetic analysis of the ICP27 gene, there is no information
available about the sites of the ICP27 molecule that are phosphorylated
during viral infection. In this study, we mapped several of the
phosphorylation sites of ICP27 following in vivo radiolabeling.
Phosphoamino acid analysis showed that serine is the only amino acid
that is phosphorylated during infection. Two-dimensional phosphopeptide
mapping showed a complex tryptic phosphopeptide pattern with at least
four major peptides and several minor peptides. In addition, ICP27
purified from transfected cells yielded a similar phosphopeptide
pattern, suggesting that cellular kinases phosphorylate ICP27 during
viral infection. In vitro labeling showed that protein kinase A (PKA),
PKC, and casein kinase II (CKII) were able to differentially
phosphorylate ICP27, resulting in distinct phosphopeptide patterns. The
major phosphorylation sites of ICP27 appeared to cluster in the
N-terminal portion of the protein, such that a frameshift mutant that
encodes amino acids 1 to 163 yielded a phosphopeptide pattern very
similar to that seen with the wild-type protein. Further, using small
deletion and point mutations in kinase consensus sites, we have
elucidated individual serine residues that are phosphorylated in vivo.
Specifically, the serine at residue 114 was highly phosphorylated by
PKA and the serine residues at positions 16 and 18 serve as targets for CKII phosphorylation in vivo. These kinase consensus site mutants were still capable of complementing the growth of an
ICP27-null mutant virus. Interestingly, phosphorylation of the serine
at residue 114, which lies within the major nuclear localization signal, appeared to modulate the efficiency of nuclear import of ICP27.
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INTRODUCTION |
The herpes simplex virus type 1 (HSV-1) regulatory protein ICP27 is a 512-amino-acid, 63-kDa
phosphoprotein that localizes to the nuclei of infected cells (1,
22, 50). ICP27 is essential for viral replication (27, 37,
38, 40, 41), and it has been shown to perform some of its
regulatory functions at the posttranscriptional level by influencing
RNA processing and export (13, 15, 25, 26, 34, 42-45, 47,
49). That is, ICP27 appears to contribute to the shutoff of host
protein synthesis by impairing host cell splicing (13, 15),
and it has been shown to contribute to the efficient expression of
HSV-1 early and late gene products by affecting 3'RNA processing
(25, 26) and viral RNA export (36, 42).
Numerous studies have been done to define the regions of ICP27 that are
important for its multiple functions. These studies have indicated that
the carboxy-terminal half of ICP27 is required for its activation and
repression functions (5, 14, 27, 38, 40). Additionally, one
study has implicated the acidic amino-terminal portion of ICP27, from
amino acids 12 to 63, in the repressor activity (39). The
C-terminal zinc finger-like region is required for the ability of ICP27
to interfere with host cell splicing (13, 15) and to
associate with and reassort splicing complex proteins (43,
44). Mears et al. (28) have identified a strong
nuclear localization signal (NLS) at amino acids 110 to 137. In
addition, the sequence between amino acids 141 and 171 contains two
arginine-rich regions that contribute to efficient nuclear
localization of ICP27 (16). The first of these
arginine-rich sequences resembles RGG boxes found in RNA-binding proteins (4, 12, 21, 23). This region has been shown to be
necessary for RNA binding by ICP27 both in vitro (29) and in
vivo (42). Furthermore, in vivo, the arginine residues in
this region are methylated (29). Recently, we (42,
49) and others (30, 35) have demonstrated that ICP27
is one of the nuclear shuttling proteins and that it contains a
leucine-rich nuclear export signal (NES) at the amino terminus
(42).
ICP27 has been shown to undergo phosphorylation in infected cells
(1, 50) and to undergo adenylation and guanylation in
isolated nuclei of infected HeLa cells (3). Two species of
ICP27 were resolved by sodium dodecyl sulfate-polyacrylamide gel
electrophoresis (SDS-PAGE), and as many as five species, heterogeneous only with respect to charge, were resolved by two-dimensional isoelectrofocusing (1, 33). The precise nature of the
posttranslational modifications and the origin of this heterogeneity of
ICP27 have not been elucidated. Despite the extensive genetic analysis
of the ICP27 gene, there is no information about the specific sites of
phosphorylation of the ICP27 molecule. Therefore, we have begun to
localize the phosphorylation sites of ICP27 by two-dimensional phosphopeptide mapping in order to investigate the possible
relationship between phosphorylation and the function of this protein.
In this study, we have demonstrated that multiple sites on ICP27 are
phosphorylated by different kinases both in vivo and in vitro and that
the major phosphorylation sites of ICP27 appear to cluster at the
N-terminal portion of the protein. Using kinase consensus site
mutations, we have demonstrated that the serine at residue 114 is highly phosphorylated by protein kinase A (PKA) and that the serine
residues at positions 16 and 18 are targets for casein kinase II
(CKII). However, mutant proteins containing these phosphorylation site mutations are able to support ICP27 deletion virus growth in
complementation assays. We have also shown that PKA consensus site
mutant S114A, containing a serine-to-alanine substitution at residue
114, was translocated into the nuclei of transfected cells less
efficiently than wild-type protein in competition experiments. This
result suggests that phosphorylation of serine residue 114 within the major NLS of ICP27 modulates the efficiency of its nuclear import.
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MATERIALS AND METHODS |
Cells and viruses.
Rabbit skin fibroblast (RSF) cells, which
were used for both infections and transfections, and cell line 2-2, which contains the wild-type ICP27 gene, were grown as described
previously (14, 46, 47). The HSV-1 wild-type strain KOS 1.1, the ICP27 mutant 27-LacZ (which has an insertion of the lacZ
gene in the ICP27 locus), and the ICP27 deletion mutant 27-del (from
which the ICP27 gene has been completely deleted) were described
previously (31, 47, 49).
Recombinant plasmids.
Plasmid pSG130B/S, which contains the
wild-type ICP27 gene, was described previously (14). The
construction and characterization of the ICP27 mutant plasmids
NES,
H17, D2
S5, and S18 have been described previously (14, 16,
42). Plasmids pN6, which encodes a mutant ICP27 with one amino
acid substitution and an insertion of 4 amino acids between residues
163 and 164, and pS13, which encodes an ICP27 mutant with an insertion
of 4 amino acids between residues 262 and 263, were described
previously (14). Plasmids containing these mutations were
digested at the BamHI site, at nucleotide 1 (14),
and at the EcoRI site that occurs in the linker insertion in
these mutants. The BamHI-to-EcoRI fragment of
pN6, containing the 5' noncoding region and the sequence encoding the
N-terminal portion of ICP27 from residues 1 to 163, was joined to the
C-terminal portion of mutant S13 from residues 264 to 512. This
resulted in a frameshift deletion mutant, termed pN6R, which encodes
only the N-terminal portion of ICP27 from residues 1 to 163. The
HinfI site in the 5' noncoding region of ICP27 from plasmid pSG130B/S was first modified by treatment with the Klenow fragment of DNA polymerase and ligation of a BglII linker. A
PstI-to-BamHI fragment from plasmid pCMV
(Clontech), which contains the human cytomegalovirus (HCMV) enhancer
and promoter, was inserted into the PstI and
BglII sites of pSG130B/S. This resulted in a plasmid, pCMV-27, in which ICP27 gene expression was driven by the HCMV promoter. A 34-mer oligonucleotide encoding amino acids
MDYKDDDDK (17) was inserted in frame into
the DrdI site upstream of the translational start site of
ICP27. The resulting plasmid, pFlag-ICP27, expresses a FLAG epitope in
frame at the amino terminus of the ICP27 protein. pFLAG-ICP27 was
sequenced around the site of the insertion.
Site-directed mutagenesis.
Mutations were introduced into
the ICP27 coding sequence by using a QuikChange site-directed
mutagenesis kit (Stratagene). The N-terminal half of ICP27 was cloned
into pUC18 and was used as the template for mutagenesis. A
serine-to-alanine mutation was introduced at residue 114 of ICP27 by
using a pair of 27-mer oligonucleotides,
5'-GCCCGGCGACCGGCTTGCTCCCCCGAG-3' and
5'-CTCGGGGGAGCAAGCCGGTCGCCGGGC-3'. A small deletion of
residues 16 to 18 was introduced by using a pair of 48-mer
oligonucleotides,
5'-CTAATTGACCTCGGCCTGGACCTCGATCTGGACGAGGACCCCCCCGAG-3' and
5'-CTCGGGGGGGTCCTCGTCCAGATCGAGGTCCAGGCCGAGGTCAATTAG-3', and a small deletion of residues 44 to 46 was introduced by using another
pair of 48-mer oligonucleotides,
5'-GAAT CGGACAGCAGCGGGGAGTGTGACGAGGACATGGAAGACCCCCA C-3'
and 5'-GTGGGGGTCTTCCATGTCCTCGTCACACTCCCCGCTGCTGTCCGATTC-3'. The specific mutations in ICP27 were verified by DNA sequencing. Subsequently, the N-terminal half of the ICP27 gene containing these
mutations was joined with the C-terminal half of the wild-type gene,
which resulted in three ICP27 mutants termed S114A,
16-18aa, and
44-46aa, respectively.
The carboxy-terminal half of ICP27 cloned into M13mp18 was also used as
a template for single-stranded site-specific mutagenesis. A
serine-to-alanine substitution was introduced at residue 334 by using
the 21-mer 5'-TCGGGCCGCAGCACCGCCAA-3'. The same substitution was also introduced at residue 311 by using the 21-mer
5'-CAGACGGGTCGCCTGGGAAAC-3'. The mutations were verified by
DNA sequencing. These mutants were first cloned into pUC18, using
compatible cloning sites, and then the C-terminal half of the ICP27
gene was joined in frame to the N-terminal half at a SalI
site that occurs at amino acid 262, recreating the full-length ICP27
gene. The resulting mutant was termed S311,334A. This mutant was also
joined to the N-terminal half of mutant S114A, resulting in a
triple-substitution mutant, termed S311,334,114A, in which all three
serine residues within the consensus PKA sites found in ICP27
were changed to alanine.
Infection and transfection.
Confluent monolayers of RSF
cells in 100-mm-diameter plastic culture dishes were infected with
HSV-1 wild-type strain KOS at a multiplicity of 10 PFU/cell. Cells were
transfected with Lipofectamine reagent (Life Technologies), used at 50 µl/dish, and with plasmid DNA at 10 µg/dish as described previously
(43). Twenty-four hours after transfection, the cells were
infected with 27-LacZ virus at a multiplicity of 10.
Radiolabeling.
RSF cells were routinely labeled in vivo 50 min after infection. Labeling with [32P]orthophosphate
(New England Nuclear [NEN]) was carried out, using either 500 µCi/ml for tryptic phosphopeptide mapping or 100 µCi/ml for
immunoprecipitation in phosphate-free modified eagle medium (ICN) with
2% fetal calf serum, for 3, 5, or 13 h as indicated in the figure
legends. Labeling with [35S]methionine (NEN) was
performed, using 50 µCi/ml for immunoprecipitation in methionine-free
modified eagle medium (ICN) with 2% fetal calf serum, for 5 h.
Immunoprecipitation and immunoblotting procedures.
Infected
RSF cells were scraped into cold phosphate-buffer-saline (PBS), and
both nuclear and cytoplasmic extracts were prepared as described
previously (43). Immunoprecipitation was performed with
monoclonal antibodies to ICP27 (H1113 and H1119 [Goodwin Institute]),
and the antigen-antibody complexes were separated on SDS-polyacrylamide
gels as described previously (43). Electrophoretic transfer
of proteins to nitrocellulose membranes was performed with a buffer
consisting of 20% methanol-25 mM Tris-190 mM glycine (pH 8.5) at 110 mA overnight. Proteins were visualized by enhanced chemiluminescence (ECL; Amersham Life Sciences), using primary antibodies H1113 and H1119 at a dilution of 1:5,000 and the secondary antibody, an anti-mouse immunoglobulin whole antibody linked to horseradish peroxidase (Amersham Life Sciences), at a dilution of
1:5,000.
Immunofluorescence staining.
RSF cells seeded onto
coverslips in 24-well dishes were transfected with Lipofectamine
reagent (Life Technologies), used at 5 µl/well, and total plasmid DNA
at 1 µg/well as described previously (43). At 24 h
after transfection, the cells were infected with 27-LacZ virus at a
multiplicity of 10 for 50 min and then overlaid with fresh medium for
3 h in the presence of the protein synthesis inhibitor
cycloheximide (Sigma) at 100 µg/ml. Subsequently, the cells were
washed and their incubation was continued in fresh medium
without cycloheximide for another 3 h. Cells were fixed, permeabilized, and stained as described previously (44). An anti-ICP27 monoclonal antibody, H1119 (Goodwin Institute), was used at
a dilution of 1:500; and an anti-FLAG monoclonal antibody, M2Ab
(Kodak), was used at a dilution of 1:400. Cells were examined with a
Nikon UFX-II epifluorescence microscope equipped with a 100× objective
lens with a numerical aperture of 1.25 (44).
Dephosphorylation of ICP27 in vitro.
Dephosphorylation was
carried out on ICP27 that had been bound to protein A-Sepharose beads
(Pharmacia). After immunoprecipitation, the antigen-antibody complexes
were either directly resuspended into gel loading buffer (125 mM
Tris-HCI [pH 6.8], 4% [wt/vol] SDS, 20% glycerol, 10%
[vol/vol] 2-mercaptoethanol, 0.01% [wt/vol] bromophenol blue) or
incubated with dephosphorylation buffer alone or the same buffer
containing 300 U of alkaline phosphatase (AP) (Boehringer Mannheim
Corp.) in a total volume of 200 µl. The dephosphorylation buffer
contained 50 mM Tris-HCl (pH 8.5), 0.1 mM EDTA, 2 mM dithiothreitol, 20 µg of bovine serum albumin per ml, 40 µg of soybean trypsin inhibitor per ml, 20 µg of aprotinin per ml, 8 µg of leupeptin per
ml, and 2 µg of pepstatin A per ml. Reaction mixtures were incubated
at 37°C for 45 min, and the reaction was stopped by washing the
mixtures three times with 0.5 ml of ice-cold PBS. The reaction products
either were resuspended in gel loading buffer and separated by SDS-PAGE
or were phosphorylated with exogenous kinases as described below.
In vitro phosphorylation of ICP27 with the PKA catalytic subunit,
CKII, and PKC.
After dephosphorylation of ICP27 as described
above, the protein A-Sepharose beads were resuspended in a total volume
of 50 µl containing 10 mM Tris-HCl (pH 7.2), 10 mM MgCl2,
50 mM NaCl, 10 mM dithiothreitol, 0.15 mCi of
[
-32P]ATP (NEN), and 60 U of PKA type I catalytic
subunit purified from bovine heart (Sigma Chemical Co.)
(52). For phosphorylation with CKII, ICP27 bound to protein
A-Sepharose beads was resuspended in a total volume of 50 µl
containing 20 mM Tris-HCl (pH 7.5), 50 mM KCl, 10 mM MgCl2,
0.15 mCi of [
-32P]ATP (NEN), and 2 mU of recombinant
CKII from Escherichia coli (Boehringer Mannheim Corp.). For
phosphorylation with PKC, the protein A-Sepharose beads to which
dephosphorylated ICP27 was bound were resuspended in a total volume of
50 µl containing 20 mM HEPES (pH 7.4), 10 mM MgCl2, 1 mM
CaCl2, 100 mg of phosphatidylserine per ml, 6 µg of
diolein per ml, 0.15 mCi of [
-32P]ATP (NEN), and 50 U
of PKC purified from rat brain (Promega) (52). All
reaction mixtures were incubated at 30°C for 30 min, and the
reactions were stopped by performing four washes with 0.5 ml of
ice-cold PBS. The reaction products were resuspended in gel loading
buffer and separated by SDS-PAGE.
Determination of phosphoamino acids.
Following
immunoprecipitation and resolution on an SDS-polyacrylamide gel, the
ICP27 band was identified by autoradiography and excised from the gel.
The polypeptide was hydrolyzed in 100 µl of 6 N HCl at 110°C for 60 min. The hydrolysate was then lyophilized and resuspended in 10 µl of
pH 1.9 buffer (formic acid [88%]-glacial acetic acid-water,
50:156:1,794 [vol/vol/vol]) containing 1 mg of unlabeled phosphoamino
acid markers (phosphoserine, phosphothreonine, and phosphotyrosine
[Sigma Chemical Co.]) per ml. The samples were spotted onto a
thin-layer cellulose (TLC) plate, and electrophoresis was performed for
20 min at 1,500 V in pH 1.9 buffer for the first dimension and for 16 min at 1,300 V in pH 3.5 buffer (glacial acetic acid-pyridine-water,
[100:10:1,890 [vol/vol/vol]) for the second dimension. The positions
of nonradioactive phosphoamino acid markers were detected by spraying
with 0.25% ninhydrin.
Two-dimensional peptide analysis.
Regions of unfixed
polyacrylamide gels containing 32P-labeled ICP27 protein
were identified by autoradiography and excised. The gel slices were
boiled for 5 min in 1 ml of 50 mM ammonium bicarbonate (freshly made)
containing 5% 2-mercaptoethanol and 0.1% SDS and then shaken
overnight at 37°C. The eluted proteins were precipitated on ice for
4 h by the addition of 250 µl of cold 100% trichloroacetic acid
(TCA) in the presence of 20 µg of bovine serum albumin as the carrier
protein. The pellet was washed with cold acetone, resuspended in 70 µl of performic acid (freshly made; 9:1 99% formic acid-30%
hydrogen peroxide), and oxidized on ice for 1 h. The oxidized
protein was diluted with 400 µl of deionized water and then
lyophilized. The pellet was resuspended in 70 µl of 50 mM ammonium
bicarbonate and was completely digested with 30 µg of tolylsulfonyl
phenylalanyl chloromethyl ketone-treated trypsin (Worthington
Biochemical Corp.). The digested protein was again lyophilized and
washed with deionized water six times. Afterward, the sample was
resuspended in 300 µl of pH 4.72 buffer
(n-butanol-pyridine-glacial acetic acid-water, 100:50:50:800 [vol/vol/vol/vol]) and relyophilized. The peptides were
dissolved in 10 µl of pH 4.72 buffer and spotted on TLC plates along
with 1.0 µl of tracking dye (a mixture of 5 mg of
-dinitrophenyllysine and 1 mg of xylene cyanol blue FF per ml).
Electrophoresis was performed toward the cathode in pH 4.72 buffer for
25 min at 1,000 V and was followed by ascending chromatography in
isobutyric acid buffer (isobutyric
acid--n-butanol-pyridine-glacial acetic acid-water, 1,250:38:96:58:558 [by volume]). The positions of labeled peptides were determined by autoradiography (51).
Complementation assays.
RSF cells grown in six-well dishes
were transfected with Lipofectamine reagent (Life Technologies), used
at 15 µl/well, and plasmid DNA at 3 µg/well as described previously
(43). At 24 h after transfection, the cells were
infected with the ICP27 deletion virus 27-del (31) at a
final titer of 4 × 106 PFU/well. After adsorption at
37°C for 1 h, the cells were washed with PBS to remove
unadsorbed virus. Progeny virus particles were released by three cycles
of freezing and thawing 24 h after infection, and the viral titer
was determined on 2-2 cells, into which the wild-type ICP27 gene is
stably integrated (47).
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RESULTS |
Phosphoamino acid analysis and phosphopeptide mapping of ICP27
purified from infected cells.
It was shown previously that ICP27
contains both stable phosphate groups and phosphate groups that cycle
on and off during viral infection (50). However, the sites
of ICP27 phosphorylation were not determined. To obtain enough ICP27 to
map the phosphorylation sites, we immunoprecipitated this protein from
infected cells. RSF cells were either mock infected or infected with
wild-type HSV-1 KOS, then labeled with either
[35S]methionine (50 µCi/ml) or
[32P]orthophosphate (100 µCi/ml) for 5 h.
Immunoprecipitations were performed on nuclear extracts,
using the ICP27-specific monoclonal antibodies H1113 and H1119.
Comparing samples from mock- and KOS-infected cells under both
sets of labeling conditions, an abundant band migrating at 63 kDa was
seen (Fig. 1). Thus, sufficient
full-length ICP27 protein for phosphoamino acid analysis and
phosphopeptide mapping could be obtained by excising the band
corresponding to ICP27 from SDS-polyacrylamide gels. The
lower-molecular-weight protein detected after immunoprecipitation
was a major degradation product of ICP27 (see below).

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FIG. 1.
Immunoprecipitation of [35S]methionine- or
32Pi-labeled ICP27 from nuclear extracts of
HSV-1-infected cells. RSF cells were either mock infected or infected
with wild-type HSV-1 strain KOS. Cells were labeled with
[35S]methionine (A) or 32Pi (B)
in vivo for 5 h, after which the cells were harvested and nuclear
extracts were prepared. The extracts were immunoprecipitated with
anti-ICP27 monoclonal antibodies H1113 and H1119. The antigen-antibody
complexes were separated on an SDS-polyacrylamide gel and detected by
autoradiography. The bands corresponding to full-length ICP27 are
indicated by arrowheads. The positions of protein molecular weight
markers are shown on the left (in kilodaltons).
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For phosphoamino acid analysis, KOS-infected cells that were labeled
with
32P
i (500 µCi/ml) beginning 50 min
after infection were harvested
at 4, 6, and 14 h
postinfection. After immunoprecipitation and
SDS-PAGE, ICP27
was identified by autoradiography. The protein
band was excised, and
the protein was eluted and further precipitated
with TCA.
Phosphoamino acid analysis was performed as described
in Materials
and Methods. Superimposing the autoradiographs (Fig.
2) onto TLC plates sprayed with
ninhydrin showed that serine was
the only phosphorylated residue found
in the ICP27 polypeptide
during viral infection.

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FIG. 2.
Phosphoamino acid analysis of ICP27. RSF cells were
infected with KOS and labeled with 32Pi
beginning 50 min after infection. After labeling for 3 h (A),
5 h (B), or 13 h (C), the cells were harvested and nuclear
extracts were prepared. ICP27 protein was isolated by
immunoprecipitation and fractionation on an SDS-polyacrylamide gel.
ICP27 was eluted from gel slices and subjected to HCl hydrolysis. The
hydrolysates were analyzed by electrophoresis in pH 1.9 buffer in the
first dimension and in pH 3.5 buffer in the second dimension. Unlabeled
phosphoamino acid standards were stained with 0.25% ninhydrin, and
their positions are labeled as follows: S, phosphoserine; T,
phosphothreonine; and Y, phosphotyrosine. Labeled phosphoamino acids
were detected by autoradiography with intensifying screens.
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Another portion of the TCA-precipitated ICP27 protein derived from the
samples harvested at 4, 6, and 14 h after infection
was digested
to completion with trypsin. The individual peptides
were separated by
two-dimensional electrophoresis (
51). TLC
plates were
exposed to film. Representative autoradiographs are
shown in Fig.
3. Four major spots were consistently
observed in
independent experiments, and they were designated
numerically
from 1 to 4. At 4 and 6 h after infection (Fig.
3A and
B), spots
2 and 4 were darker than spots 1 and 3. The difference in the
intensities of these spots indicated that the stoichiometries
and/or
the turnover rates of the phosphates at different sites
were not
equivalent. A diffuse background over spot 1 was always
observed. At
the later time postinfection (Fig.
3C), the overall
phosphorylation
level of ICP27 had increased dramatically. The
diffuse background
around spot 1 became so intense that it eventually
covered this spot.
Moreover, several minor spots, which were very
faint before 6 h
postinfection, became more intense and easier
to visualize at the
later time postinfection. However, the nature
of these minor spots is
unclear; they could be either partial
trypsin digestion products
or peptides that contain phosphate
groups that cycle on and off during
the course of infection (
50).
Partial-digestion products can
be generated when multiple arginine
or lysine residues appear in
tandem; when a proline, aspartic
acid, or glutamic acid residue
follows immediately C terminal
to an arginine or lysine residue; or
when phosphorylated serine
residues are present adjacent to the trypsin
cleavage site (
51).
In addition, the material seen at the
origin was likely derived
from undissolved peptides, because in some
experiments, when the
sample was completely dissolved and separated, no
additional spots
or streaks were observed in this region.

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FIG. 3.
Two-dimensional tryptic phosphopeptide maps of ICP27
from infected cells labeled in vivo. RSF cells were infected with KOS
and labeled with 32Pi in vivo beginning 50 min
after infection. Immunoprecipitated ICP27 was fractionated on an
SDS-polyacrylamide gel, eluted from the gel slice, precipitated with
TCA, and then digested to completion with TPCK-treated trypsin. The
peptides were dissolved in pH 4.72 buffer. Electrophoresis was
performed from the cathode (right) toward the anode (left) in pH 4.72 buffer for 25 min at 1,000 V and was followed by chromatography from
bottom to top in isobutyric acid buffer. The positions of labeled
peptides were visualized by autoradiography with intensifying screens.
ICP27 was immunoprecipitated from nuclear extracts of infected cells
labeled in vivo for 3 h (A), 5 h (B), or 13 h (C); it
was also immunoprecipitated from the cytoplasmic fraction of
infected-cell extracts that were labeled for 5 h (D). Arrowheads
indicate the sample origins on the TLC plates. Major phosphopeptides
are numbered 1 to 4.
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Even though ICP27 localizes predominantly in the infected-cell
nucleus, a detectable amount of protein, which is also phosphorylated,
can be seen in the cytoplasm (Fig.
4A and
B, lanes 1 and 2), likely
due to nuclear export of the protein
(
42,
49). Therefore,
we performed two-dimensional
tryptic phosphopeptide mapping on
ICP27 immunoprecipitated
from cytoplasmic extracts of cells harvested
at 6 h (Fig.
3D). The overall level of incorporation of label
was less than
that seen with the protein from nuclear extracts
(Fig.
3B). However,
the phosphopeptide pattern was equivalent,
including the four major
phosphopeptides and a few minor ones.
Therefore, nuclear and
cytoplasmic ICP27 molecules had very similar,
complex phosphorylation
patterns during the course of viral infection.
It appeared that while
the intensity of the phosphorylated peptides
increased at later times
after infection, phosphorylated sites
were similar to those evident
early in infection. This is because
no new major phosphopeptides were
seen. Therefore, tryptic phosphopeptide
mapping was routinely performed
on ICP27 immunoprecipitated from
nuclear extracts of cells harvested at
6 h postinfection. Furthermore,
because of the differences in the
minor spots, we focused on the
four major spots, 1 to 4, in our initial
efforts to map the in
vivo phosphorylation sites of ICP27.

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FIG. 4.
Two-dimensional tryptic phosphopeptide mapping of ICP27
from transfected cells. RSF cells were either infected with KOS or
transfected with plasmid pCMV-ICP27 expressing ICP27 and labeled with
32Pi for 5 h. (A and B) Immunoprecipitated
ICP27 from either a nuclear extract of infected cells (lanes 1), a
cytoplasmic extract of infected cells (lanes 2), or a nuclear extract
of transfected cells (lanes 3) was resolved on an SDS-polyacrylamide
gel and transferred to a nitrocellulose membrane. The position of ICP27
is indicated by arrowheads. (A) The radioactively labeled proteins on
the blot were detected by autoradiography. (B) The blot was
subsequently probed with anti-ICP27 monoclonal antibodies ( ICP27).
The dark band seen in all lanes at 55 kDa is heavy-chain immunoglobulin
G which reacts with the secondary antibody used in Western analysis and
is present because immunoprecipitated proteins were transferred to the
membrane. (C) Immunoprecipitated ICP27 from a nuclear extract of
transfected cells (lanes 3, panels A and B) was subjected to
two-dimensional tryptic phosphopeptide mapping as described in the
legend to Fig. 3. The arrowhead indicates the sample origin on the TLC
plate. The four major phosphopeptides are identified by numbers.
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Phosphopeptide mapping of ICP27 from transfected cells labeled in
vivo.
At present, three open reading frames (ORFs) in the HSV-1
genome have been shown to be associated with protein kinase activity, including US3, ICP6, encoding the large subunit of ribonucleotide reductase, and UL13. Therefore, it was deemed of interest to determine whether a viral or cellular kinase(s) is mainly responsible for phosphorylation of ICP27. To investigate this, RSF cells were transfected with an ICP27 expression plasmid in which ICP27 was under
the control of the HCMV promoter and enhancer. This resulted in
high levels of protein expression in the transfected cells in
the absence of ICP27-null mutant virus infection. Cells were labeled
with [32P]orthophosphate for 5 h beginning
24 h after transfection, after which ICP27 was purified from
nuclear extracts by immunoprecipitation and fractionation on an
SDS-polyacrylamide gel. The protein was transferred to a
nitrocellulose membrane, which was first exposed to film (Fig. 4A, lane
3) and then probed with ICP27 monoclonal antibodies (Fig. 4B, lane 3).
It appeared that the expression level of ICP27 from transfected cells
was even higher than that from KOS-infected cells (Fig. 4A and B;
compare lanes 1 and 3). More importantly, ICP27 was phosphorylated to a
similar extent in transfected cells and in virus-infected cells, which
indicated that cellular kinases were able to efficiently phosphorylate
this protein. To determine if the phosphorylation pattern in
transfected cells was the same as that in infected cells,
two-dimensional tryptic phosphopeptide mapping was performed on ICP27
purified from transfected cells (Fig. 4C). By comparing Fig. 4C and 3B, it became apparent that the phosphopeptide pattern of ICP27 expressed from a transfected plasmid was equivalent to that seen with the wild-type protein synthesized during viral infection, in that the same
four major spots, as well as a few minor spots, were present. These
data strongly suggest that cellular kinases, not viral kinases,
phosphorylate ICP27 during viral infection.
In vitro phosphorylation of ICP27 with the PKA catalytic subunit,
CKII, and PKC.
Little is known about which cellular kinases
phosphorylate ICP27 in vivo. However, kinases such as PKA, CKII, and
PKC have been implicated in HSV-1 replication (53).
Furthermore, there are good consensus sites for PKA, CKII, and
PKC phosphorylation in the predicted peptide sequence of ICP27.
Therefore, to approach the question of which cellular kinases
phosphorylate ICP27 during viral infection, we first studied
phosphorylation in vitro, using purified PKA, CKII, and PKC.
ICP27 was immunoprecipitated from KOS-infected cells and
dephosphorylated with AP to remove phosphate groups that were added in
vivo. As seen in Fig. 5A, AP efficiently dephosphorylated ICP27 in vitro in that most of the phosphate was
removed from ICP27 by treatment with this enzyme (lane 3). This
resulted not only in a significant decrease in the amount of radiolabel
present in the sample (compare lanes 1 and 2 with lane 3) but also in a
slightly faster rate of migration on an SDS-polyacrylamide gel,
consistent with a loss of negatively charged phosphate groups, as
seen when the membrane was treated with antibodies to ICP27, as in the
Western blot shown on the right (Fig. 5B; compare lanes 1 and 2 with lane 3). These results also clearly indicated that the
dephosphorylation conditions used did not cause any significant protein
degradation.

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FIG. 5.
Dephosphorylation of ICP27 by AP and subsequent in vitro
phosphorylation with purified PKA catalytic subunit, CKII, or PKC. (A
and B) ICP27 from KOS-infected RSF cells was immunoprecipitated and
bound to protein A-Sepharose beads. The antigen-antibody complexes were
either directly resuspended into SDS sample buffer (lanes 1), incubated
with phosphatase buffer alone (lanes 2), or treated with AP (lanes 3).
The reaction products were analyzed on an SDS-polyacrylamide gel and
transferred to a nitrocellulose membrane. The blot was first exposed to
film (A) and then probed with anti-ICP27 monoclonal antibodies
( ICP27) (B). The heavy-chain immunoglobulin G band, as described in
the legend to Fig. 4, can be seen in all lanes in panel B. (C and D)
Dephosphorylated ICP27 was subsequently subjected to in vitro kinase
reactions in the absence of added kinase (lanes 2, 4, and 6) or in the
presence (+) of exogenous PKA (lanes 1), CKII (lanes 3), or PKC (lanes
5). The reaction products were analyzed on an SDS-polyacrylamide gel
and transferred to a nitrocellulose membrane. The radioactively labeled
proteins on the blot were visualized by autoradiography with
intensifying screens (C); the blot was subsequently probed with
anti-ICP27 monoclonal antibodies (D). The positions of ICP27 are
indicated by arrowheads.
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After dephosphorylation, ICP27 was phosphorylated in vitro with
either purified PKA catalytic subunit, CKII or PKC. When ICP27
was incubated with [

-
32P]ATP in the absence of kinase
(Fig.
5C, lanes 2, 4, and 6), there
was no detectable
incorporation of the
32P label. This result suggested
that ICP27-immunoprecipitated complexes
did not contain any
functional cellular kinase and that ICP27
was not able to phosphorylate
itself. PKA, CKII, and PKC were
all able to phosphorylate ICP27
in vitro (Fig.
5C, lanes 1, 3,
and 5, respectively).
Considering the amount of immunoprecipitated
ICP27, as measured
by Western blot analysis (Fig.
5D), it appeared
that PKA phosphorylated
ICP27 to the greatest extent and that
PKC phosphorylated ICP27 to the
least extent. This result was
confirmed by tryptic phosphopeptide
mapping (see
below).
To determine whether phosphorylation of ICP27 by PKA, CKII, or PKC
actually occurred at the sites that are used in vivo, we
performed
two-dimensional phosphopeptide mapping on the in vitro-phosphorylated
ICP27 proteins (Fig.
5C). Figure
6 shows
the maps of tryptic phosphopeptides
of ICP27 that were labeled by
incubation with either PKA (Fig.
6A), CKII (Fig.
6B), or PKC (Fig.
6C).
The positions of individual
phosphopeptides in each case were
determined by superimposing
the map of in vitro-labeled tryptic
peptides with that of in vivo-labeled
peptides seen at 14 h after
infection (Fig.
3C). Overlapping spots
were marked. Because of the
higher efficiency of in vitro phosphorylation
than of in vivo
phosphorylation of ICP27, only the phosphopeptide
pattern of the later
time point during viral infection could be
compared directly with that
of in vitro phosphorylation. For ICP27
labeled with PKA (Fig.
6A),
three spots corresponded to major
spots 1, 2, and 3, which were also
observed after labeling in
vivo (Fig.
3C). Spot 2 corresponded to the
peptide most efficiently
labeled by PKA. However, upon comparison of
Fig.
3C and Fig.
6A,
distinct differences were evident. Specifically,
several minor
spots produced during in vivo phosphorylation became much
more
prominent when ICP27 was phosphorylated with PKA in vitro. In
addition, a few new spots were observed. There are several possible
explanations for these observations. First, it is possible that
there
is a complex balance between phosphorylation and dephosphorylation
in
vivo and that equilibrium cannot be mimicked in the in vitro
kinase
reaction. Second, it is possible that several PKA-responsive
sites are
not easily accessible to kinase in vivo but become available
in vitro.

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FIG. 6.
Two-dimensional phosphopeptide analysis of ICP27
phosphorylated in vitro with purified PKA catalytic subunit, CKII, or
PKC. Immunoprecipitated ICP27 from virus-infected cells was first
dephosphorylated by AP in vitro, then phosphorylated with PKA (A), CKII
(B), or PKC (C) in the presence of [ -32P]ATP as
shown in Fig. 5C, and finally subjected to two-dimensional tryptic
phosphopeptide mapping as described in the legend to Fig. 3.
Autoradiography was performed with intensifying screens. Arrowheads
indicate the sample origins on TLC plates. Major phosphopeptides are
identified by numbers, and unique peptides are indicated by asterisks
(see the text).
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ICP27 labeled in vitro by either CKII or PKC (Fig.
6B and C) produced a
subset of the peptides seen in Fig.
3C. Two spots
produced by CKII
phosphorylation overlapped with major spots 3
and 4 observed in vivo,
and in addition, the diffuse background
often seen in the region of
major spot 1 was observed. Major spot
1 itself was not seen, and this
background was seen only in vitro
with CKII. Only one spot produced by
PKC phosphorylation overlapped
with major spot 3 observed in
vivo. There were also some new spots
observed in both cases.
Thus, in vitro phosphorylation of ICP27
with either PKA, or CKII,
or PKC appeared to occur at the in vivo
phosphorylation sites. PKA was
able to phosphorylate ICP27 at
more sites, at least in vitro, than CKII
or PKC. More importantly,
these results indicated that spots 1 and 2 were mainly derived
from PKA phosphorylation, spot 4 and the
diffuse background around
spot 1 and 2 were mainly derived from
PKA phosphorylation, spot
4 and the diffuse background around spot 1 were mainly derived
from CKII phosphorylation, and spot 3 might contain
sequences
recognized by all three
kinases.
The major phosphorylation sites of ICP27 are clustered in the
N-terminal half of the protein.
To begin the mapping of the major
phosphopeptides that result from in vivo phosphorylation, we analyzed
the phosphorylation of a protein expressed by a frameshift mutant,
termed N6R, that encodes ICP27 from amino acids 1 to 163. This was done
because a commonly observed major degradation product of ICP27 was
labeled to the same or a slightly greater extent than the full-length protein (Fig. 1). This degradation product, which has an apparent molecular size of around 28 kDa, must encode the N-terminal portion of
ICP27 because both monoclonal antibodies used for
immunoprecipitation recognize epitopes in the N-terminal
portion of the protein (28). Because we do not have a
recombinant virus containing the N6R mutation, cells were transfected
with a plasmid encoding the ICP27 frameshift mutant and, subsequently,
the transfected cells were infected with the ICP27-null mutant virus
27-LacZ. Under these conditions, the only ICP27 protein expressed
during infection was from the transfected mutant plasmid. Cells were
labeled with [32P]orthophosphate for 5 h
beginning 50 min after infection, after which ICP27 was purified from
nuclear extracts by immunoprecipitation and fractionation on an
SDS-polyacrylamide gel. The proteins were transferred to a
nitrocellulose membrane, which was first exposed to film (Fig.
7A) and then probed with ICP27 monoclonal
antibodies (Fig. 7B). The results suggested that the mutant protein
still contained most of the phosphorylation sites, since it was able to
incorporate 32P label to a level similar to that
incorporated by the wild type. The lower-molecular-weight protein
detected in the immunoprecipitation of the wild-type protein (Fig. 7A)
represented the major degradation product of ICP27 described above;
this was confirmed by Western blotting analysis (Fig. 7B). The origin
and biological significance of this degradation product are
unknown. Both wild-type and mutant ICP27 were excised from the unfixed
SDS-polyacrylamide gel, and tryptic phosphopeptide mapping was
performed (Fig. 7C and D). Comparison of Fig. 7C and Fig. 3B showed
that the phosphopeptide pattern of wild-type ICP27 expressed from a
transfected plasmid and subsequently infected with 27-LacZ was
equivalent to that seen with wild-type protein synthesized during
viral infection with HSV-1 KOS. The pattern also contained four
major spots, a few minor spots, and the diffuse background around spot
1. Interestingly, the frameshift mutant protein reproduced all four
major spots and several minor spots as well (Fig. 7D). This indicated
that the major phosphorylation sites of ICP27 appear to be clustered in
the N-terminal portion of the protein, from amino acids 1 to 163.

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FIG. 7.
Phosphorylation of wild-type ICP27 and frameshift mutant
N6R in vivo. RSF cells were transfected with plasmids encoding either
wild-type (WT) ICP27 or the frameshift mutant N6R. Twenty-four hours
later, the cells were infected with 27-LacZ. Labeling with
32Pi was done for 5 h beginning 50 min
after infection. ICP27 proteins were immunoprecipitated with anti-ICP27
monoclonal antibodies ( ICP27), separated by SDS-PAGE, and
transferred to a nitrocellulose membrane. The blot was first exposed to
film (A) and then probed with anti-ICP27 monoclonal antibodies (B). The
bands corresponding to full-length ICP27 and to mutant ICP27 are
indicated by asterisks. (C and D) Phosphopeptides of both wild-type
ICP27 (C) and frameshift mutant N6R, encoding ICP27 from amino acids 1 to 163, were generated by treatment with trypsin and resolved on TLC
plates as described in the legend to Fig. 3. Major phosphopeptides are
identified by numbers.
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Phosphopeptide mapping of mutant ICP27 proteins.
To further
define the major phosphorylation sites of ICP27, we analyzed the
phosphorylation of several mutant proteins containing either point
mutations or small deletions within the N-terminal half of ICP27. There
are several protein kinase consensus sites within the N-terminal
region, including sites for PKA, CKII, and PKC. Since serine is the
only phosphorylated residue found in the ICP27 polypeptide during viral
infection (Fig. 2), we focused on potential phosphoserine
consensus sites. According to the PKA consensus motif RXXS*
(32), there is one putative PKA consensus site, at
residue 114. A PKA consensus site mutant termed S114A, which contains a
serine-to-alanine substitution at residue 114, was generated by
site-directed mutagenesis. Cells were transfected with this mutant
construct, and tryptic phosphopeptide mapping was performed as
described earlier. Overall, the 32P-labeled peptide
recovery rate for this mutant was much lower than that for the wild
type (Fig. 8A; compare lanes 1 and 4). However, focusing on the major spots in the phosphopeptide map, it can
be seen that mutant S114A yielded a peptide pattern different from that
of wild-type ICP27 (Fig. 8C). Specifically, two of the major peptides,
1 and 2, were not detected and one minor peptide, designated as 5, became more predominant. Peptides 1, 2, and 5 lay on a diagonal sloping
toward the anode, which suggested that these peptides might be
phosphoisomers, with peptide 5 being the least-phosphorylated form and
peptide 1 being the most highly phosphorylated form. This result
suggested that the serine at residue 114 was highly phosphorylated by
PKA in vivo and that this serine residue might have adverse effects on
the phosphorylation of one or more nearby serine residues. This is
because a mutation at this single site caused the most highly
phosphorylated isomer, major peptide 1, to disappear and the
least-phosphorylated isomer, peptide 5, to become more predominant. To
verify this result, the same mutant construct was transfected into
cells and the mutant ICP27 protein, purified by immunoprecipitation,
was subsequently dephosphorylated prior to being rephosphorylated in
vitro with PKA. After PKA phosphorylation in vitro, the mutant protein
was analyzed by tryptic phosphopeptide mapping. The major spots, 1 and
2, were also missing, and minor spot 5 was very distinct (data not
shown). Since spot 2 was one of the peptides most efficiently labeled
by PKA (Fig. 6A), this result further supported the conclusions that the serine at position 114 was phosphorylated in vivo by PKA
and that it was phosphorylated in a majority of the ICP27 molecules in
the nuclei of infected cells. As a further test of this conclusion, we
performed phosphopeptide mapping on two additional PKA consensus site
mutants following in vivo labeling as outlined above. Mutant S311,334A
has two amino acid substitutions; the serine residues that occur in two
consensus PKA sites, at residues 311 and 334, were replaced by alanine
residues. The phosphopeptide pattern of this mutant protein (Fig. 8D)
was equivalent to that of wild-type ICP27 (Fig. 7C). The four major
spots were clearly seen. Since both of these PKA sites occur in the
C-terminal half of ICP27, this result supports the conclusion that the
major phosphorylation sites of ICP27 that are phosphorylated during
infection occur in the N-terminal portion of the protein. This can be
further seen with the triple PKA consensus site mutant, S114,311,334A, in which the serine residues at positions 114, 311, and 334 have all
been replaced by alanine. In this case, the phosphopeptide map derived
from the mutant protein labeled in vivo was very similar to that seen
with the single-mutant S114A (compare Fig. 8E and C). Major spot 1 was
barely detectable over the diffuse background around spot 1. Further, spot 2 was not found and minor spot 5 was very prominent (Fig.
8E). This was the pattern seen with mutant S114A (Fig. 8C), indicating
that, in vivo, only the serine at position 114 is phosphorylated
and that the serines at 311 and 334 are not phosphorylated despite
their positions in PKA consensus sites.

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FIG. 8.
Phosphopeptide analysis of ICP27 mutant proteins labeled
in vivo. RSF cells were transfected with a series of phosphorylation
site-specific mutants. Viral infection with 27-LacZ to boost protein
expression, in vivo 32Pi labeling, and
immunoprecipitation of ICP27 were performed as described in the legend
to Fig. 7. ICP27 proteins were separated by SDS-PAGE and transferred to
a nitrocellulose membrane. (A and B) The blot was first exposed to film
(A) and then probed with anti-ICP27 monoclonal antibodies ( ICP27)
(B). Lanes: 1, wild-type ICP27; 2, CKII consensus site mutant
16-18aa, from which residues 16 to 18 were deleted; 3, CKII
consensus site mutant 44-46aa, from which residues 44 to and 46 have been deleted; 4, PKA consensus site single-mutant S114A,
containing a serine-to-alanine substitution at residue 114; 5, PKA
consensus site double-mutant S311,334A, containing serine-to-alanine
substitutions at residues 311 and 334; 6, PKA consensus site
triple-mutant S114,311,334A, containing serine-to-alanine substitutions
at residues 114, 311, and 334. The position of ICP27 is indicated by
arrowheads. (C to G) Phosphopeptides of each mutant ICP27 protein were
generated by treatment with trypsin and resolved on TLC plates as
described in the legend to Fig. 3. Arrowheads indicate the sample
origins. Major phosphopeptides are identified by numbers. (C) S114A;
(D) S311,334A; (E) S114,311,334A; (F) 16-18aa; (G) 44-46aa.
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There are two putative CKII consensus sites, at residues 16 and 18, based on the CKII phosphorylation site motif S*XX(D/E)
(
32). Therefore, we analyzed the phosphorylation pattern of
a small-deletion mutant,

16-18aa, from which residues 16 to 18
have
been deleted. In the tryptic phosphopeptide map of this mutant
protein
labeled in vivo (Fig.
8F), the most distinct difference
from the
wild-type map, as seen in Fig.
7C, was that the deletion
mutant protein
did not produce major peptide 4. Since peptide
4 was one of the
major spots seen when ICP27 was phosphorylated
with CKII in vitro
(Fig.
6B), this result indicates that either
one or both of the CKII
consensus serine residues was phosphorylated
in vivo. To
differentiate between these two possibilities, two
additional
single CKII consensus site mutants, termed S16A and
S18A, which
contain a serine-to-alanine substitution at residues
16 and 18, respectively, were also generated by site-directed
mutagenesis. Tryptic
phosphopeptide mapping was performed with
these mutant constructs as
described above. It appeared that both
mutant proteins, like the wild
type, were able to produce major
peptide 4 (data not shown). This
result suggests that both serine
16 and serine 18 are phosphorylated by
CKII in vivo. However,
we cannot rule out the possibility that these
two serine residues
are redundant with regard to phosphorylation by
CKII in
vivo.
Computer alignment of protein sequences of ICP27 homologues from
several herpesviruses revealed that there are conserved consensus
CKII
sites near the N termini of HSV-1 and HSV-2 ICP27, Epstein-Barr
virus
(EBV) SM protein, and herpesvirus saimiri ORF 57 (
8).
Specifically, there are three putative CKII consensus sites at
serine residues 44, 45, and 46 in HSV-1 ICP27. However,
deletion
of these consensus CKII sites did not reduce the in
vitro phosphorylation
of ICP27 by CKII (data not shown). Furthermore,
deletion mutant

44-46aa was still able to produce all four major
spots and a
few minor spots seen with the wild-type protein, when
labeled
in vivo (Fig.
8G). These results suggest that these serine
residues
are not highly phosphorylated either in vivo or in vitro.
However,
we cannot rule out the possibility that nearby serine residues
were able to be phosphorylated by CKII when the conserved serine
residues were
absent.
It should be noted that the levels of recovery of
32P-labeled peptides from some of the mutant proteins,
especially S114A, were
somehow lower than that of the wild type. To
demonstrate the levels
of phosphorylation and protein expression for
each mutant compared
to the wild type, mutant and wild-type proteins
were purified
as described previously, the nitrocellulose membrane was
exposed
to film (Fig.
8A), and then the membrane was probed with
anti-ICP27
monoclonal antibodies (Fig.
8B). The lower level of
phosphorylation
observed in S114A (lane 4) was partially due to a
lower level
of protein expression compared to that of the wild type
(lane
1). However, the overall protein expression levels of the other
mutants were comparable to that of wild-type ICP27. Importantly,
the
triple PKA site mutant protein S114,311,334A (lane 6) was
expressed at
a level similar to that of the wild type (lane 1),
yet its tryptic
phosphopeptide map (Fig.
8E) was the same as that
seen with mutant
S114A (Fig.
8C). This indicates that the observed
phosphopeptide
pattern was not influenced by the level of protein
expression.
ICP27 kinase consensus site mutants were able to support ICP27
deletion virus growth.
To determine if phosphorylation plays an
essential role in ICP27 function, we investigated the ability of the
protein kinase consensus site mutants to support viral infection
in complementation assays. RSF cells were transfected
with each of the mutant ICP27 constructs, as indicated in Table
1, or with wild-type ICP27 or pGEM-1
vector alone. Twenty-four hours after transfection, the cells were
infected with an ICP27 deletion virus, 27-del. Twenty-four hours later,
viral progeny were assayed on the complementing cell line 2-2 (48) (Table 1). In this assay, pGEM-1 served as a
negative control, and its ability to support 27-del virus growth
was arbitrarily set to an index value of 1. Wild-type ICP27 (pSG130B/S) served as a positive control and yielded viral-progeny titers either 20- or 14-fold higher than those seen with pGEM-1 alone in two independent experiments. Since viral yields from transfected cells differed, possibly due to the transfection
efficiency, we compared the complementation indices rather than the
viral-progeny titers of different experiments. ICP27 is essential for
viral replication (24, 40, 41, 47), and mutations introduced into important functional regions of this protein result in defective proteins that are not able to complement 27-del. Three well-defined ICP27 mutants, including a nuclear export mutant (
NES
[42]), a nuclear localization mutant (D2
S5
[16]), and an activator mutant (H17
[14]), all failed to support 27-del virus
growth. However, the PKA consensus site mutant S114A and the two CKII consensus site mutants,
16-18aa and
44-46aa, were all capable of complementing 27-del growth, although to somewhat lesser extents than the wild type. Both S114A and
16-18aa did show some defects in
phosphorylation in vivo, as determined by tryptic phosphopeptide mapping. Since complementation assays can only detect dramatic defects
in ICP27 activities, and not subtle ones, we cannot determine whether
the slight differences seen in Table 1 among the protein kinase
consensus site mutants are biologically significant.
Phosphorylation may regulate the efficiency of nuclear import of
ICP27.
It has been shown that phosphorylation plays an important
role in regulating nuclear transport of proteins in eukaryotic cells. The PKA-phosphorylated serine at residue 114 occurs within the major
NLS of ICP27 (28). Therefore, to determine whether
phosphorylation affects ICP27 nuclear import, mutant S114A was
transfected alone or in the presence of different amounts of a
wild-type-ICP27-expressing plasmid, pFLAG-ICP27 (54).
The wild-type construct contains a synthetic FLAG epitope at the
extreme N terminus so that it can be distinguished from the mutant
protein, which reacts with the anti-ICP27 monoclonal antibody H1119 but
not the anti-FLAG monoclonal antibody M2. The FLAG epitope-tagged
wild-type ICP27 does not react with H1119, because the position of the
FLAG epitope masks the H1119-specific epitope, which also resides at
the extreme N terminus. Wild-type ICP27 was found to be exclusively
nuclear, as was mutant S114A when transfected into cells alone (Fig.
9A and C, respectively). However, when
five times the amount of wild-type ICP27 plasmid DNA was cotransfected
with mutant S114A, there was a decrease in the efficiency of nuclear
import of this mutant. About 50% of the cells showed a pronounced
cytoplasmic fluorescence (Fig. 9G and H), and many of these cells had a
nuclear-cytoplasmic fluorescence pattern that was
indistinguishable from that seen with mutant D2
S5 (Fig. 9D),
from which the major NLS has been deleted (16). While
wild-type ICP27 could compete with S114A, the converse was not the
case, as expected. Adding S114A plasmid DNA to that of the wild type at
a 5:1 ratio did not affect the nuclear import of wild-type ICP27 (Fig.
9E). Furthermore, the PKA site mutant S311,334A was found to be
exclusively nuclear when transfected alone (Fig. 9B) or with wild-type
plasmid DNA at a 5:1 ratio (Fig. 9F). Therefore, these results
suggested that phosphorylation of the serine at residue 114 may
modulate the efficiency of nuclear import.

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FIG. 9.
A serine-to-alanine substitution in the PKA consensus
site at residue 114 within the ICP27 NLS results in less-efficient
nuclear import of the mutant protein. Cells were transfected with
plasmids expressing FLAG epitope-tagged wild-type ICP27 (A) or mutant
S311,334A (B), S114A (C), or D2 S5 (D). In addition, cells were
transfected with S114A plasmid DNA and FLAG-tagged wild-type plasmid at
a 5:1 ratio (E), with S311,334A plasmid and the wild-type plasmid at a
5:1 ratio (F), or with FLAG-tagged wild-type plasmid DNA and S114A
plasmid at a 5:1 ratio (G and H). Twenty-four hours after transfection,
the cells were infected with 27-LacZ virus in the presence of
cycloheximide (100 µg/ml). The cells were incubated in the presence
of cycloheximide for 3 h, at which time the cells were washed,
fresh medium without cycloheximide was added, and incubation was
continued for an additional 3 h, after which the cells were fixed.
The treatment with cycloheximide was performed to synchronize the boost
of protein expression that occurred following infection with the
27-LacZ virus and thus allow monitoring of protein import. Cells were
stained with anti-FLAG monoclonal antibody (A and E) or with anti-ICP27
monoclonal antibody H1119 (B to D and F to H).
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DISCUSSION |
ICP27 is an essential immediate-early regulatory protein that has
been shown to be required for viral inhibition of RNA splicing (15), for activation of the expression of genes
containing specific 3' processing signals (5, 26, 45),
and for nuclear export of viral intronless transcripts (36,
42). ICP27 has been shown to be modified
posttranslationally by the addition of phosphate groups
(50); however, despite extensive genetic analysis of the
ICP27 gene, until now there has been no information about the
sites of the ICP27 molecule that are phosphorylated during viral
infection or about the role that phosphorylation might play in
the activities of this protein. Therefore, we have examined the
tryptic phosphopeptide patterns of wild-type and mutant ICP27 proteins
as a first step toward understanding ICP27 phosphorylation and how
phosphorylation at these sites affects the functions of this protein.
Serine was found to be the only residue phosphorylated during
viral infection. A complex pattern of phosphopeptides, which
contained four major spots and a few minor spots, was
observed for ICP27 purified from nuclear extracts of infected cells
(Fig. 3). We also determined the phosphopeptide pattern of the
cytoplasmic form of ICP27, and a very similar pattern was seen (Fig.
3D). Some of the phosphopeptides appeared to be structurally
related
for example, major spots 1, 2, and 5. During the course of
viral infection, the presence of the major peptides was consistent
while that of the minor spots was variable in different
experiments and at different times after infection. The origin of these
minor spots is currently unknown. They may have resulted from partial
digestion by trypsin, from peptides containing unstable phosphate
groups, or from peptides that were differentially phosphorylated during
viral infection.
Even though there is no evidence to indicate that ICP27 is
phosphorylated by any of the known viral kinases, we investigated whether this protein was phosphorylated by a viral or cellular kinase(s) in vivo. When cells were transfected with an expression construct in the absence of viral infection, a phosphopeptide pattern very similar to that seen for ICP27 expressed during
viral infection was produced. This result suggests either that cellular kinases are the only kinases that can phosphorylate ICP27 or that both
cellular and viral kinases are able to phosphorylate this protein at
similar sites in vivo. We favor the first explanation, since it has
been shown that viral kinases possess some unique catalytic properties
different from those of cellular kinases (7, 9-11).
Therefore, we investigated the phosphorylation of ICP27 by three major
cellular kinases, PKA, PKC, and CKII. Both PKA and CKII phosphorylated
ICP27 to a higher level than PKC in vitro, and ICP27 labeled with PKA,
CKII, or PKC yielded different tryptic phosphopeptide patterns.
Specifically, some, but not all, of the four major spots were produced
after labeling with any one of the three kinases (Fig. 6). In addition,
a few unique spots which are not readily observed with ICP27 labeled in
infected cells were produced in each case. These unique peptides may
contain kinase-responsive sites that are not easily accessible to the cognate kinase in vivo but become available in vitro, perhaps because
of folding differences or lack of interaction with other cellular or
viral proteins that might mask specific sites. These data suggest that
PKA and CKII may be the two major protein kinases that are responsible
for the phosphorylation of ICP27 in vivo. Interestingly, there were
more spots from ICP27 phosphorylated by PKA than from ICP27
phosphorylated by CKII in vitro. Some of these spots corresponded to
the minor spots observed with ICP27 labeled in vivo. This suggests that
ICP27 may contain a larger number of potential PKA-responsive sites
than is apparent based on the defined consensus for PKA sites
(32). It is of note that at least two consensus PKA
sites
namely, the serine residues at positions 311 and 334
were not
phosphorylated in vivo. Additionally, a diffuse background
over major spot 1 was observed clearly with ICP27 labeled in infected
cells and with wild-type ICP27 phosphorylated by CKII, but not by PKA
or PKC, in vitro. This suggests that this diffuse background may
reflect the stage of ICP27 phosphorylation by CKII. Importantly,
these studies showed that unlike ICP4 (52), immunoprecipitated ICP27 could not undergo phosphorylation
without an exogenous kinase, suggesting that ICP27 cannot autophosphorylate.
In our efforts to map the phosphorylation sites of ICP27 in vivo by
using frameshift mutant N6R, we were surprised to find that this
mutant, which encodes ICP27 from amino acids 1 to 163, was
phosphorylated as efficiently as the wild-type protein in vivo.
Furthermore, a tryptic phosphopeptide pattern very similar to that for
the wild type was seen, including all four major spots and a few minor
spots. This indicated that the major phosphorylation sites of ICP27 are
located in the N-terminal portion of the protein. For finer mapping,
point mutants and two small-deletion mutants were constructed so that
specific sites could be pinpointed. It was found that the serine
residue at position 114 in the N-terminal portion of ICP27 is highly
phosphorylated in vivo. In addition, the serine residues at positions
16 and 18 are likely to be targets for CKII phosphorylation in vivo. A
stretch of three CKII consensus serines in the N terminus of ICP27 is
highly conserved in other homologues, including EBV SM protein,
herpesvirus saimiri ORF 57, and HSV-2 ICP27. Site-directed
mutagenesis of these consensus CKII sites in EBV SM greatly reduced the
in vitro phosphorylation of SM by CKII, even though this
phosphorylation event did not affect the ability of SM to
upregulate chloramphenicol acetyltransferase expression in a
transient-transfection assay (8). In contrast, ICP27
mutant
44-46aa, from which these consensus serine residues were
deleted, was efficiently phosphorylated by CKII in vitro and had a
tryptic phosphopeptide pattern similar to that of the wild-type protein
when labeling was performed in vivo (Fig. 8G). Thus, although these
sites are conserved, their phosphorylation does not appear to be
critical for protein function.
It is interesting that the major phosphorylation sites of ICP27 that
are highly phosphorylated in vivo are located in the amino-terminal
portion of the protein, since the C-terminal half of the protein has
been shown to be important for both activation and splicing repressor
functions (14, 27, 37, 38). Because ICP27 has recently been
shown to shuttle between the nucleus and the cytoplasm (30, 35,
42, 49), we considered the possibility that there may exist a
subpopulation of ICP27 in which the C-terminal sites are
phosphorylated, perhaps in the cytoplasmic fraction. However, ICP27
purified from the cytoplasm yielded the same pattern as nuclear
material. It was also possible that the phosphorylation could occur
transiently, with the phosphate groups cycling off. To directly study
the C-terminal portion of ICP27 to determine whether
phosphorylation could be detected, large-deletion mutant R9
S13, from
which residues 28 to 262 were deleted, was generated (54).
Attempts to immunoprecipitate the mutant protein from 32P-labeled whole-cell extracts by using polyclonal
antibodies generated against the C-terminal portion of ICP27 were
unsuccessful in that we were unable to observe any distinct band around
40 kDa even after long exposure periods (55). Furthermore,
the expression of the mutant protein was barely detectable by Western
analysis or immunoprecipitation of
[35S]methionine-labeled proteins (54).
Therefore, the inability to detect the 32P-labeled
mutant protein may have been due to a lack of phosphorylation in this
region, the extremely low level of expression of the protein, or the
rapid turnover of a protein encoding only the C-terminal half of ICP27.
It is also possible that phosphorylation at sites in the C-terminal
half of ICP27 targets the protein for early degradation, similar to the
situation that occurs with I
B
. The transcription factor NF-
B
is sequestered in the cytoplasm by the inhibitor protein I
B
.
Extracellular inducers of NF-
B activate signal transduction pathways
that result in the phosphorylation of serine residues 32 and 36 of
I
B
, and this phosphorylation event targets I
B
to the
ubiquitin-proteasome pathway (6). It is interesting to
postulate that the phosphorylation of C-terminal sites of ICP27 targets the protein for immediate degradation. A major truncated product of ICP27 that contains only the N-terminal portion of the
protein is often seen in the immunoprecipitated complex (Fig. 1).
Although there is no available information on the potential function or
significance of this product, two lines of evidence suggest that this
truncation is not an artifact that occurs because of proteolytic
degradation during the preparation of nuclear extracts. First, this
product was also found on Western blots from either transfected or
infected cells that were directly harvested into SDS sample buffer.
Second, it has been reported that glutathione S-transferase-ICP27 fusion proteins purified from
bacterial-cell lysates contain an N-terminally truncated protein as the
major product (29). Interestingly, this was also the case
when ICP27 was expressed as a fusion protein in the ThioFusion
expression system (55). Thus, this product appears to
be generated in vivo in both mammalian and bacterial cells. However, we
consider it unlikely that this product arises from proteosome
targeting following phosphorylation of the sites in the C-terminal
portion of ICP27. First, if that were the case, complete degradation
would be expected to occur. Second, pulse-chase experiments using
[35S]methionine labeling showed that the half-lives of
both nuclear and cytoplasmic ICP27 molecules from KOS-infected
cells were at least 5 h, and there were no significant differences
in the half-life of mutant N6R, which encodes amino acids 1 to 163, or
S311,334A, in which alanines were substituted for the serine residues
in two C-terminal PKA sites (55). Both of these mutant
proteins might be expected to be more stable than the wild-type protein if C-terminal phosphorylation was a signal for degradation.
The role of ICP27 phosphorylation at the kinase consensus sites that we
have mapped has been investigated by two different approaches.
Complementation experiments demonstrated that the PKA and CKII
consensus site mutants were able to support the growth of an ICP27
deletion mutant only slightly less efficiently than wild-type protein.
It is certainly possible that phosphorylation plays a more significant
role at different stages of the HSV life cycle in the host. For
example, we have not tested the ability of these mutants to support the
growth of an ICP27-null mutant virus in cells of neuronal origin.
Recently, it has been shown that deletion of a highly conserved
polyserine tract found between residues 184 and 198 in HSV-1
ICP4 results in a virus that is marginally impaired for growth in
culture and in the eyes of infected mice but is completely
impaired for growth in the trigeminal ganglia (2, 53). To
address questions on specific functions and interactions of ICP27
during viral infection, the kinase consensus site mutations are
being introduced into the viral genome by marker transfer. Viral growth
defects as well as effects on specific functions, such as RNA
processing and export, will be analyzed in different cell lines.
By the second approach, we were able to discern a role for the
phosphorylation of serine 114, which occurs within the major NLS
of ICP27 (28). Recent studies indicate that NLS function can
be precisely regulated, with phosphorylation being the main mechanism
controlling NLS-dependent nuclear import of a number of proteins
(18-20). For example, nuclear localization of the
archetypal NLS-containing simian virus large tumor antigen (T-ag)
is regulated by the CcN motif, which comprises the T-ag NLS. In
this motif, a CKII site (C) 13 amino acids N terminal to the NLS
modulates the rate of nuclear import and a cyclin-dependent
kinase site (c) adjacent to the NLS regulates the maximal level of
nuclear accumulation (19, 20). We examined whether
phosphorylation at serine residue 114, which is within the major NLS of
ICP27 (residues 110 to 137), had any effect on nuclear import. When transfected into cells alone, mutant S114A was found to be exclusively nuclear; however, in competition experiments with wild-type ICP27, there was a pronounced decrease in the efficiency of nuclear import of
this mutant. These data argue that phosphorylation at serine residue
114 modulates the efficiency of ICP27 nuclear import. Biochemical
studies to determine which step of nuclear transport is affected by
phosphorylation are under way.
In summary, the data presented here represent the first step toward
elucidation of the functional roles of ICP27 phosphorylation. Further efforts to map the phosphorylation sites in more detail and to
delineate the biological significance of ICP27 phosphorylation may provide some important insights into the multiple functions of this protein.
 |
ACKNOWLEDGMENTS |
We thank Saul Silverstein (Columbia University) for the 27-del virus.
This work was supported by Public Health Service grant AI21515
from the National Institute of Allergy and Infectious Diseases to R.M.S.-G.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Microbiology and Molecular Genetics, College of Medicine, B240 Medical Sciences I, University of California, Irvine, CA 92697-4025. Phone: (949) 824-7570. Fax: (949) 824-8598. E-mail:
RMSANDRI{at}UCI.EDU.
 |
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Journal of Virology, April 1999, p. 3246-3257, Vol. 73, No. 4
0022-538X/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
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