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Journal of Virology, February 1999, p. 985-992, Vol. 73, No. 2
0022-538X/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Infectious cDNA Clone of Hypovirus CHV1-Euro7: a Comparative
Virology Approach To Investigate Virus-Mediated Hypovirulence of
the Chestnut Blight Fungus Cryphonectria
parasitica
Baoshan
Chen and
Donald L.
Nuss*
Center for Agricultural Biotechnology,
University of Maryland Biotechnology Institute, University of
Maryland, College Park, Maryland 20742-4450
Received 19 August 1998/Accepted 21 October 1998
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ABSTRACT |
We report the construction of a full-length infectious cDNA clone
for hypovirus CHV1-Euro7, which is associated with reduced virulence
(hypovirulence) of the chestnut blight fungus Cryphonectria parasitica. Field strains infected with CHV1-Euro7 are more
virulent and exhibit less severe phenotypic changes
(hypovirulence-associated traits) than strains infected with the
prototypic hypovirus CHV1-EP713, for which the first infectious cDNA
clone was developed. These differences exist even though the two
hypoviruses show extensive sequence identities: 87 to 93% and 90 to
98% at the nucleotide and amino acid levels, respectively. The
relative contributions of viral and host genomes to phenotypic traits
associated with hypovirus infection were examined by transfecting
synthetic transcripts of the two hypovirus cDNAs independently into two
different virus-free C. parasitica strains, EP155 and
Euro7(
v). Although the contribution of the viral genome was clearly
predominant, the final magnitude and constellation of phenotypic
changes were a function of contributions by both genomes. The high
level of sequence identity between the two hypoviruses also allowed
construction of viable chimeras and mapping of the difference in
symptom expression observed for the two viruses to the open reading
frame B coding domain. Implications of these results for engineering
enhanced biological control and elucidating the basis for
hypovirus-mediated attenuation of fungal virulence are discussed.
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INTRODUCTION |
Hypoviruses are a family of
cytoplasmically replicating RNA viruses that persistently attenuate
virulence (hypovirulence) and alter a number of complex biological
processes, e.g., pigment production, asexual sporulation, and mating
(hypovirulence-associated traits), of their fungal host, the chestnut
blight fungus Cryphonectria parasitica (1, 31, 34,
35). Hypoviruses and accompanying hypovirulence can be
transmitted cytoplasmically to vegetatively compatible virulent
C. parasitica strains via anastomosis (fusion of hyphae),
providing the basis for successful biological control of chestnut
blight observed in European forests and orchards (5, 23).
Natural or introduced hypovirulence-mediated biological control has
been much less successful in North American forest ecosystems (1,
22, 31). Factors contributing to this lower efficacy include but
may not be limited to barriers to cytoplasmic spread due to a high
degree of diversity in vegetative compatibility in North American
C. parasitica populations relative to populations in Europe
(2, 4, 5, 30).
Hypovirulent C. parasitica field isolates exhibit a wide
range of variability in virulence levels and in the magnitude and constellation of hypovirulence-associated traits (16, 18, 20,
31). Results of cytoplasmic transmission studies with natural
hypovirus isolates suggest that this variability is primarily a
function of hypovirus genetic diversity (17-19). Early
attempts at hypovirulence-mediated biological control in North America involved fungal strains that had severely reduced virulence and debilitated mycelial growth and sporulation. While highly curative, these strains showed limited dissemination and persistence
(31). These observations led to the suggestion that more
effective control might be achieved by the use of more robust, less
debilitated hypovirulent C. parasitica strains
(31).
While progress in the successful establishment of
hypovirulence-mediated biological control proceeds at the moderate pace necessitated by the completion of lengthy field studies, rapid progress
was recently achieved in the molecular characterization of hypoviruses.
A general view of hypovirus genome organization has been provided by
the cloning and complete sequence determination of two hypoviruses
(41, 25) and the partial sequence analysis of several others
(27, 28, 39, 43). The prototypic hypovirus CHV1-EP713 is
found in infected cells as a 12.7-kbp double-stranded RNA (dsRNA)
(41). Two contiguous open reading frames (ORF), designated
ORF A and ORF B, are located within the polyadenylated coding strand
and specify polyproteins that undergo proteolytic processing (13,
42). The subsequent development of a full-length infectious cDNA
clone of CHV1-EP713 RNA unequivocally established hypoviruses as the
causal agent of hypovirulence (12).
The full-length CHV1-EP713 cDNA clone has been used to initiate
infection in virus-free C. parasitica isolates by either of two protocols, transformation or transfection. Transformation involves
integration of the CHV1-EP713 cDNA into the fungal chromosome (12), transcription of cDNA-derived viral coding strand RNA, and initiation of cytoplasmic hypovirus replication. The presence of a
nuclear copy of CHV1-EP713 cDNA provides the capacity to transmit virus
to ascospore progeny via nuclear inheritance (7). This novel
mode of transmission is predicted to circumvent transmission barriers
posed by the vegetative incompatibility system, thereby enhancing
biocontrol potential. Recent environmental release studies have
confirmed hypovirus transmission to ascospore progeny by transgenic
hypovirulent C. parasitica strains under actual field conditions (2). Transfection is based on electroporation of a full-length synthetic CHV1-EP713 coding strand transcript into spheroplasts of virus-free C. parasitica strains
(8). This versatile method has been used to effectively
extend hypovirus infection to fungal species related to C. parasitica (6, 8) and to begin identifying
virus-encoded symptom determinants (6, 15).
We now report the cloning, sequence analysis, and construction of a
full-length cDNA clone for hypovirus CHV1-Euro7. C. parasitica strains infected with this hypovirus, while
hypovirulent, are more aggressive in colonizing chestnut stem tissue
and have higher levels of asexual sporulation than strains infected
with the prototypic hypovirus CHV1-EP713. The availability of this
second infectious hypovirus cDNA clone provides powerful new
comparative approaches for elucidating the mechanisms underlying
hypovirus-mediated attenuation of fungal virulence and has implications
for continued engineering of hypoviruses for enhanced biological
control potential.
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MATERIALS AND METHODS |
Fungal strains, growth conditions, and phenotypic measurements.
C. parasitica EP155 (ATCC 38755), a virulent hypovirus-free
strain, was provided by S. Anagnostakis (Connecticut Agricultural Experiment Station), who obtained the original isolate in 1977 from a
canker on Castanea dentata (Marshall) Borkh. in a field plot
in Connecticut. Strain EP713 (ATCC 52571) was generated by anastamosis-mediated transfer of hypovirus RNA from the French hypovirulent strain EP113 to strain EP155. Strains EP155 and EP713 are
therefore considered isogenic. Strain EP713 was the source of
prototypic hypovirus CHV1-EP713 RNA used to construct the corresponding full-length infectious cDNA clone (12). Hypovirulent
C. parasitica Euro7 (ATCC 66021) was isolated in 1978 by
William MacDonald (West Virginia University) from a superficial canker
on a European chestnut coppice sprout in a forested area approximately
30 km north of Florence, Italy. This strain was the source of hypovirus
CHV1-Euro7 RNA. Designations used in hypovirus nomenclature include CHV
for Cryphonectria hypovirus, a number indicating species
relatedness and, following a hyphen, the fungal host from which the
virus was isolated (24). Strain Euro7(
v), also supplied by
William MacDonald, is a virus-free single conidial isolate derived from Euro7. Stock cultures were maintained on potato dextrose agar (PDA;
Difco, Detroit, Mich.) as previously described (26).
Measurements of radial growth and sporulation levels on synthetic media
were performed as described by Hillman et al. (26). To
ensure consistency for phenotypic measurements, parallel inoculation cultures were initiated by transfer of mycelial plugs directly from
transfection regeneration plates to PDA plates. Uniform mycelial plugs
were subsequently transferred to replicate test PDA plates for
analysis. This protocol was instituted because some fungal strain-virus
combinations [primarily Euro7(
v)-CHV1-EP713] were observed to
undergo a change in morphology involving reduced growth rate and
production of irregular colony margins upon continued passage on PDA.
Virulence assays were performed with dormant American chestnut tree
stems as previously described (12, 29), with a minimum of
six duplicate inoculations per fungal strain. Inoculated stems were
kept at room temperature in a plastic bag to maintain moisture.
Isolation of hypovirus dsRNAs.
For routine analyses, dsRNA
was extracted from hypovirus-infected fungal cultures grown in liquid
EP complete medium (38) for 4 to 5 days at 25°C by the
protocol of Hillman et al. (26) through the RQ1 DNase
(Promega) digestion step. The quantity and quality of the preparations
were examined by agarose (0.8%) gel electrophoresis (26).
For purposes of cDNA library construction, contaminating
single-stranded RNA and tRNA were minimized by further digestion of the
dsRNA preparations with S1 nuclease (400 to 600 µg of partially
purified dsRNA digested with 300 U of S1 nuclease [United States
Biochemicals] at 37°C for 2 h). The reaction mixtures were then
subjected to phenol-chloroform extraction, and the intact dsRNA was
recovered following ethanol precipitation and passage through a Spin
Column-1000 (Sigma).
Generation of a CHV1-Euro7 cDNA library.
The general
protocol used originally by Shapira et al. (41) to generate
a cDNA library for prototypic hypovirus CHV1-EP713 dsRNA was used to
prepare cDNA from purified CHV1-Euro7 dsRNA. Based on the prediction
that CHV1-Euro7 RNA may have nucleotide sequence similarity with
CHV1-EP713 RNA, first-strand CHV1-Euro7 cDNA synthesized with oligo(dT)
as a primer was used as a template for PCR amplification of the
terminal domains with primer pairs specific for the 5' terminus
(primers RSDS10 and BR18 [CHV1-EP713 map positions 1 to 22 and 350 to
369, respectively] [40]) and the 3' terminus (primers
BH23 and RSDS11 [CHV1-EP713 map positions 12131 to 12148 and 12677 to
12697, respectively] [40]). The precise terminal
sequences were confirmed with the Rapid Amplification of cDNA Ends
(RACE) technique performed on purified CHV1-Euro7 dsRNA as described by
Chen et al. (9) for CHV1-EP713 dsRNA. CHV1-Euro7-specific
primers used for 5' RACE of the coding and noncoding strands were
oligo-490 (CHV1-Euro7 map positions 490 to 471) and Euro-73 (CHV1-Euro7
map positions 12300 to 12319), respectively.
A cDNA library was synthesized with CHV1-Euro7 primers Euro-71 and
Euro-64, corresponding to final map positions 12232 to
12251 and 1231 to 1250 of the noncoding and coding strands, respectively,
and a
TimeSaver cDNA Synthesis Kit (Pharmacia). The resulting
double-stranded
cDNA was ligated into plasmid pUC19, followed
by transformation of
competent
Escherichia coli XL1-Blue MRF'
cells (Stratagene).
The library was screened for larger cloned
cDNA inserts, which were
subsequently sequenced and analyzed with
Genetics Computer Group
alignment programs with reference to the
published CHV1-EP713
nucleotide sequence (
41). Two gaps in the
map (coordinates
5501 to 6310 and 8518 to 9246) were filled by
PCR amplification of the
region with total cDNA as a template.
Multiple independent cDNA clones
covering the entire CHV1-Euro7
RNA were sequenced to ensure
accuracy.
Construction of an infectious full-length CHV1-Euro7 cDNA.
The general protocol previously used for the construction of a
full-length infectious cDNA clone of CHV1-EP713 dsRNA (12, 18) was adapted for the construction of a CHV1-Euro7 infectious cDNA clone. Early in the construction process, cDNA clones of the
terminal domains were modified through the use of PCR to incorporate a
unique NotI site followed by a T7 polymerase promoter fused to the 5' terminus of the CHV1-Euro7 coding strand and to add a unique
SpeI site following the CHV1-Euro7 3'-terminal poly(A). Several large intermediate clones were generated from overlapping partial cDNA clones by use of common endonuclease restriction sites
contained within neighboring clones. The full-length cDNA was obtained
by ligating two terminally modified large cDNA clones that spanned
CHV1-Euro7 map positions 1 to 5389 and 5220 to the 3' terminus at a
common NarI site (map position 5310) and cloning the ligated
clones into plasmid vector pCRScript SK(+) (Stratagene) to form plasmid
pTE7. Transcripts corresponding to the CHV1-Euro7 coding strand were
synthesized from SpeI-digested pTE7 in a T7 polymerase
reaction and used to transfect C. parasitica spheroplasts as
described by Chen et al. (6, 8).
Two chimeric CHV1-EP713-CHV1-Euro7 infectious cDNA constructs, A713BE7
and AE7B713, were prepared by precise swapping of the
major hypovirus
coding domains ORF A and ORF B. PCR and standard
cloning procedures
were used to construct chimeras from a combination
of the full-length
CHV1-EP713 cDNA clone pLDST (
12,
41), the
full-length
CHV1-Euro7 cDNA clone pTE7 (this study), and several
intermediate
CHV1-Euro7 cDNA-containing plasmids generated during
the construction
of pTE7. The integrity of each chimera was completely
verified by
sequence analysis of the junctions of interchanged
domains. A detailed
description of the cloning steps is available
from D.L.N. upon
request.
Nucleotide sequence accession number.
The GenBank accession
number for the nucleotide sequence of the full-length cDNA copy of
CHV1-Euro7 genomic RNA is AF082191.
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RESULTS |
Organizational similarities and regions of sequence conservation
observed for the two hypoviruses for which full-length sequence information had previously been published, CHV1-EP713 (41)
and CHV2-NB58 (25), suggested the possibility that
CHV1-EP713-specific primers corresponding to the terminal portions of
the genome might generate reverse transcription-PCR amplicons from
purified CHV1-Euro7 dsRNA. This possibility was confirmed by sequence
analysis of reverse transcription-PCR amplicons generated with primer
pairs that were specific for the 5' terminus (primers RSDS10 and BR18 [map positions 1 to 22 and 350 to 369, respectively]
[40]) and for the 3' terminus (primers BH23 and RSDS11
[map positions 12131 to 12148 and 12677 to 12697, respectively]
[40]) of the CHV1-EP713 coding strand. The terminal
CHV1-Euro7 amplicons showed on the order of 93% identity with the
published CHV1-EP713 terminal nucleotide sequences. This new sequence
information was used to design CHV1-Euro7-specific terminal primers
with which to generate a CHV1-Euro7 cDNA library. The high level of
identity between the CHV1-EP713 and CHV1-Euro7 nucleotide sequences
allowed ordering of randomly sequenced CHV1-Euro7 cDNA clones by
comparison to the published CHV1-EP713 sequence (41).
Several short gaps in the sequence not covered by cDNA clones were
filled by PCR amplification of total cDNA, while the sequences of the
terminal ends were confirmed by sequencing of amplicons generated by 5'
RACE performed on purified CHV1-Euro7 dsRNA (9). A
comparison of the derived CHV1-Euro7 genome sequence to the genome
sequences of CHV1-EP713 and CHV2-NB58 is presented in Fig.
1.

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FIG. 1.
Comparison of the CHV1-Euro7 cDNA sequence information
determined in this study with that of two previously reported
full-length hypovirus cDNA sequences: CHV1-EP713 (41) and
CHV2-NB58 (25). (A) Similarities at the nucleotide levels.
Previously identified protein coding regions are noted within the open
boxes representing the viral genome (34). The lengths in
nucleotides for the 5' and 3' noncoding (nc) regions and ORFs A and B
for CHV1-EP713 are indicated at the top. The numbers of nucleotides for
comparable regions of the other hypoviruses were 494, 1,869, 9,494, and
844, respectively, for CHV1-Euro7 and 487, 1,314, 9,873, and 831, respectively, for CHV2-NB58. The percent nucleotide identity for
different coding and noncoding regions is indicated between the
different viral genome diagrams being compared. (B) Similar information
at the deduced amino acid levels. Note that CHV2-NB58 lacks a p29
homolog and contains p50 and p52 as the homologs of p40 and p48 found
in CHV1-Euro7 and CHV1-EP713.
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A field strain containing hypovirus CHV1-EP713 was originally isolated
in 1966 in southern France, while the field strain containing hypovirus
CHV1-Euro7, strain Euro7, was isolated later (1978) in northern Italy
(see Materials and Methods). The original C. parasitica
strain harboring hypovirus CHV2-NB58 was isolated quite recently in
North America (27). However, this hypovirus is speculated to
be of distant European origin (25, 27). Consistent with the
geographical and chronological histories of these virus isolates,
CHV1-Euro7 is much more closely related at the nucleotide and amino
acid levels to CHV1-EP713 than to CHV2-NB58. Sequence identity is
particularly high at the terminus corresponding to the 5' end of the
coding strand, where only four differences occur within the first 100 nucleotides. The level of nucleotide identity for the entire 5'
noncoding domain for these two hypoviruses is 93%, compared to 66%
identity over the same region for CHV1-Euro7 and CHV2-NB58. A similar
relative level of nucleotide identity was observed for the 3' noncoding
domain (Fig. 1). However, the CHV1-Euro7 genome is 11 nucleotides
shorter than the CHV1-EP713 genome (12,701 versus 12,712). Differences
relative to the CHV1-EP713 sequence include two single nucleotide
deletions and one nucleotide insertion within the 5' noncoding region,
the deletion within ORF B of one codon that corresponds to CHV1-EP713
leucine residue 1400 (nucleotides 6561 to 6563), and seven nucleotide
deletions within the 3' noncoding region upstream from the poly(A)
tail. Four of the differences within the 3' noncoding region occur
adjacent to the poly(A) tail: 5'-GAACAACAAAG-poly(A) for
CHV1-EP713 versus 5'-GAACAAC-POLY(A) for CHV1-Euro7. Thus,
this four-base difference could result from a simple G-to-A transition
at CHV1-EP713 map position 12712.
The similarity between CHV1-Euro7 and CHV1-EP713 is even more striking
at the amino acid sequence level, ranging from a low of 90% identity
for the p40 portion of ORF A to a high of 98% identity in the region
between the putative polymerase and helicase domains. Prominent
features and their sequence contexts previously identified for
CHV1-EP713 (reviewed in reference 34) are conserved in CHV1-Euro7. These include amino acid residues C-162 and H-215, essential for p29 cleavage; the UAAUG pentanucleotide at the junction between ORF A and ORF B; amino acid residues C-341 and H-388, essential
for p48 cleavage; and the p48 cleavage site (G-418/A-419). The only
notable difference is that the presumptive CHV1-Euro7 p29 cleavage site
has the sequence RIG/NQL rather than the sequence RIG/GRL demonstrated
for CHV1-EP713 (13). These high levels of identity contrast
with the relatively low levels of sequence conservation between
CHV1-Euro7 and CHV2-NB58, particularly in ORF A, where CHV2-NB58 lacks
a defined p29 domain.
Development of an infectious cDNA clone for CHV1-Euro7.
C.
parasitica Euro7, the source of hypovirus CHV1-Euro7, exhibits
phenotypic traits that differ significantly from those of strain EP713,
the source of hypovirus CHV1-EP713. For example, Euro7 grows more
rapidly on solid synthetic medium than corresponding virus-free
isogenic strains, while EP713 grows more slowly. EP713 forms small,
superficial cankers on chestnut tissue (i.e., it is considered highly
hypovirulent) and produces little or no asexual spores either on
synthetic medium or on chestnut tissue. In contrast, Euro7 is only
moderately hypovirulent (30a). Aggressive canker expansion
early after inoculation eventually slows or ceases, concomitant with
heavy callus formation at the canker margins. Additionally, Euro7 does
produce asexual spores, although at a reduced level relative to
corresponding virus-free isogenic strains, on synthetic medium and
especially on chestnut tissue. These properties
more effective
colonization of bark tissue and higher sporulation levels
are predicted to positively contribute to biological control potential by
enhancing persistence and dissemination (31). Both Euro7 and
EP713 are deficient in the production of orange pigmentation, a useful
laboratory marker of hypovirus infection.
The significant differences in phenotypic traits exhibited by strains
Euro7 and EP713, coupled with a high level of sequence
identity for
hypoviruses CHV1-Euro7 and CHV1-EP713, suggested
that the development
of a full-length infectious cDNA clone for
CHV1-Euro7 would provide
unique opportunities to examine the relative
contributions of hypovirus
and fungal host genomes to hypovirulence
and associated traits and
would allow the mapping of hypovirulence
determinants by the
construction of viral
chimeras.
With the transfection protocol developed by Chen et al. (
8),
synthetic transcripts generated from a full-length CHV1-Euro7
cDNA
clone (see Methods and Materials) were shown to be infectious,
yielding
infected colonies with traits typical for the Euro7 field
strain (data
not shown). To examine the relative phenotypic contributions
of viral
and fungal host genomes, two virus-free virulent strains,
Euro7(

v)
and EP155, were transfected independently with CHV1-Euro7
and
CHV1-EP713 synthetic transcripts (Fig.
2). Both fungal strains
transfected with
the CHV1-Euro7 synthetic transcripts resembled
the Euro7 field strain
in terms of hyphal growth rate and colony
morphology, while the two
strains transfected with the CHV1-EP713
synthetic transcripts clearly
resembled strain EP713. Additionally,
the double-stranded form of the
corresponding hypovirus RNA accumulated
in each of the transfectants
(Fig.
3). As has been reported for
hypovirulent strain EP713 (
40) and passaged transgenic
hypovirulent
strains transformed with CHV1-EP713 cDNA (
7),
some of the transfectants
examined in this study contained dsRNA
species that had internal
deletions and that migrated faster than
full-length viral dsRNA
(Fig.
3, lanes 4 and 7). However, no phenotypic
changes have been
found to be associated with the appearance of these
deletion dsRNA
species (
7). Transfectants were further
analyzed in detail
for growth characteristics, canker formation
(virulence), and
sporulation properties on both synthetic medium and
chestnut tissue
(Tables
1 and
2).

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FIG. 2.
Colony morphology for virus-free C. parasitica EP55 and Euro7( v) and related hypovirus
transfectants. (Top row) Colonies of virus-free strain EP155 (center)
and strain EP155 transfected with CHV1-EP713, CHV1-Euro7, chimeric
virus AE7B713, or chimeric virus A713BE7. (Bottom row) Colonies of
virus-free strain Euro7( v) (center) and strain Euro7( v) transfected
with CHV1-EP713, CHV1-Euro7 chimeric virus AE7B713, and chimeric virus
A713BE7. Photographs were taken on day 7.
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FIG. 3.
Agarose gel electrophoretic analysis of dsRNAs recovered
from transfected C. parasitica strains. The migration
position of the full-length hypovirus dsRNA is indicated by the arrow
on the right. Lane M contains 200 ng of a 1-kb DNA ladder (Gibco BRL)
as relative size markers. dsRNA preparations recovered from equal
volumes of cultured virus-free and transfected strains were loaded in
the following order: lane 1, EP155; lane 2, EP155-CHV1-EP713; lane 3, EP155-CHV1-Euro7; lane 4, EP155-AE7B713; lane 5, EP155-A713BE7; lane
6, Euro7( v); lane 7, Euro7( v)-CHV1-EP713; lane 8, Euro7( v)-CHV1-Euro7; lane 9, Euro7( v)-AE7B713; and lane 10, Euro7( v)-A713BE7. The faster-migrating species observed in lanes 4 and 7 correspond to internally deleted defective viral RNAs previously
identified in hypovirus-infected strains (7, 40). The
presence of these deletion dsRNAs has not been associated with any
change in phenotypic traits.
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TABLE 1.
Effect of transfection with wild-type and chimeric
hypovirus transcripts on colony size and asexual sporulation
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TABLE 2.
Effect of transfection with wild-type and chimeric
hypovirus transcripts on canker expansion and production of asexual
spores on canker tissue
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Relative phenotypic contributions of hypovirus and C. parasitica genomes.
It is clear from an inspection of Table
1 and Fig. 2 that the hypovirus genome contributed significantly to the
hyphal growth rates of the transfectants. As has been observed for the
Euro7 field strain, CHV1-Euro7 transfectants grew as fast as or faster than the corresponding virus-free strains. Similarly, CHV1-EP713 transfectants, like strain EP713, grew more slowly than the
corresponding virus-free strains. However, a subtle contribution of the
host genome was also observed. Although strain EP155 grew at a rate similar to that of virus-free strain Euro7(
v), its growth rate was
reduced to a greater extent by transfection with a specific hypovirus
synthetic transcript; i.e., strain EP155 transfected with either
CHV1-EP713 or CHV1-Euro7 grew more slowly than the corresponding
Euro7(
v) transfectants (Table 1).
A similar pattern was evident for sporulation profiles (Table
1). That
is, transfection of EP155 and Euro7(

v) with CHV1-EP713
RNA resulted
in a greater reduction of sporulation than did transfection
with
CHV1-Euro7 RNA, with relative fold reductions of 24,643 versus
1,971 in
EP155 and 86,667 versus 40 in Euro7(

v). A host genome
contribution
was again seen for CHV1-Euro7 transfectants; e.g.,
transfection of
EP155 with CHV1-Euro7 RNA resulted in a 1,971-fold
reduction in
sporulation, while sporulation by Euro7(

v) transfected
with
CHV1-Euro7 RNA was only 40-fold lower than that of Euro7(

v).
More dramatic differences in the effect of the two hypoviruses on host
phenotype were observed on dormant chestnut stem tissue
(Table
2).
Although the growth rates for strains EP155 and Euro7(

v)
on solid
synthetic medium were similar, strain EP155 was consistently
more
aggressive in canker production following inoculation of
dormant
chestnut stem tissue (Table
2 and Fig.
4), producing
cankers nearly twice the
size of those produced by Euro7(

v).
The cankers incited by both
virus-free strains produced high levels
of stromal pustules
(pycnidium-containing stromata that erupt
through the bark) and viable
conidia by 30 days postinoculation.
Transfection with CHV1-EP713
severely reduced the ability of both
strains to expand on chestnut
tissue, resulting in the production
of small, superficial cankers that
produced very few stromal pustules,
as previously described for
hypovirulent strain EP713 (
12).
CHV1-Euro7 transfectants, in
contrast, were much more aggressive
in canker formation irrespective of
the fungal host background
and produced cankers with morphologies very
similar to those described
for the Euro7 field strain (
30a).
These cankers had distinctive
ridged margins, suggesting the formation
of callus tissue. Unlike
the cankers produced by the CHV1-EP713
transfectants, these cankers
produced prodigious levels of stromal
pustules containing viable
asexual spores. Thus, canker morphology,
canker expansion, and
asexual sporulation levels on chestnut stem
tissue appear to be
controlled to a much greater extent by the
hypovirus genome than
by the genome of the fungal host.

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FIG. 4.
Gallery of representative cankers formed by virus-free
and transfected C. parasitica strains. (Top row) Typical
cankers formed by virus-free strain EP155 (center) and strain EP155
transfected with CHV1-EP713, CHV1-Euro7, chimeric virus AE7B713, and
chimeric virus A713BE7. (Bottom row) Cankers formed by virus-free
strain Euro7( v) and the corresponding set of Euro7( v) transfectants
(as detailed for top row). Cankers were photographed 30 days
postinoculation after wetting with ethanol to enhance color contrast of
cankers and the surrounding area. Stromal protrusions (stromata that
contain asexual spore-forming bodies termed pycnidia) are prominent
features of the surface of cankers caused by virus-free strains EP155
and Euro7( v) as well as the CHV1-Euro7 and A713BE7 transfectants.
Spiral structures, termed ceri, composed of conidia are seen extruded
from some stromata. These structures are rarely observed on the surface
of cankers formed by CHV1-EP713 or AE7B713 transfectants.
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Use of infectious chimeric hypovirus cDNA transcripts to map
differences in hypovirus-mediated alterations of fungal host
phenotype.
The high level of sequence identity shared by
CHV1-Euro7 and CHV1-EP713 suggested the possibility that viral coding
domains responsible for differences in host phenotypic changes caused by these two hypoviruses could be mapped through the construction of
chimeras of infectious viral cDNAs. The feasibility of this approach
was tested to a first approximation by interchanging the two viral
polyprotein coding domains, ORF A and ORF B (see Methods and
Materials). Transfection with the synthetic transcripts derived from
the chimeras, designated AE7B713 and A713BE7, resulted in productive
infections, as judged by the accumulation of hypovirus dsRNA (Fig. 3).
In the EP155 genetic background, transfection with the AE7B713 chimera
resulted in a colony morphology similar to that of CHV1-EP713
transfectants, while transfection with the A713BE7 chimera resulted in
a colony morphology similar to that of CHV1-Euro7 transfectants (Fig.
2). Comparable results were observed for these same chimeras in the
Euro7(
v) genetic background (Fig. 2), indicating that the ORF B
portion of the chimera generally determined colony morphology.
Differences in growth rates and sporulation levels on synthetic medium
conferred by transfection with CHV1-EP713 and CHV1-Euro7
RNAs also
mapped to ORF B (Table
1). Although AE7B713 transfectants
clearly grew
much more slowly than A713BE7 transfectants in both
fungal strain
backgrounds, very minor differences relative to
the corresponding
wild-type virus transfectants were observed.
For example, the
EP155-AE7B713 and EP155-A713BE7 transfectants
grew slightly more slowly
than the EP155-CHV1-EP713 and EP155-CHV1-Euro7
transfectants,
respectively. Additionally, the Euro7(

v)-AE7B713
transfectants
consistently grew slightly faster than the Euro7(

v)-CHV1-EP713
transfectants. As was observed for CHV1-EP713, the AE7B713 chimera
also
reduced asexual sporulation to a much greater extent than
CHV1-Euro7 or
the A713BE7 chimera in both fungal strains (Table
1).
As noted above, differences in the phenotypic consequences of
transfection with the two infectious hypovirus cDNA transcripts
were
most pronounced when the resulting transfectants were inoculated
onto
chestnut stem tissue (Fig.
4). Similarly, the contribution
of ORF B to
these differences was most clearly observed within
this context (Fig.
4
and Table
2). Transfectants containing the
chimeric viruses that have
CHV1-Euro7 ORF B produced cankers strikingly
similar in appearance to
those caused by the corresponding wild-type
CHV1-Euro7 transfectants.
These similarities extended to the formation
of raised, apparently
callus-forming canker margins and the production
of stromal pustules.
As indicated in Table
2, EP155-A713BE7 transfectants
produced cankers
even larger than those formed by EP155-CHV1-Euro7
transfectants
(mean ± standard deviation, 25.4 ± 8.4 versus 12.1
± 6.4 cm
2 by day 31), while cankers caused by the
Euro7(

v)-A713BE7 and
Euro7(

v)-CHV1-Euro7 transfectants were of
essentially the same
size (18.2 ± 5.1 versus 17.1 ± 6.3 cm
2 by day 31). Like the CHV1-Euro7 transfectants, the
A713BE7 transfectants
of both fungal species produced significant
levels of stromal
pustules and conidia within the canker area (Fig.
4
and Table
2). Consistent with the results observed for the A713BE7
transfectants,
EP155-AE7B713 and Euro7(

v)-AE7B713 transfectants
produced cankers
of a size and a morphology very similar to those
caused by the
corresponding CHV1-EP713 transfectants (all on the order
of 3
cm
2 by day 31). Again, very minor differences relative
to the wild-type
virus transfectants were observed. Cankers incited by
CHV1-EP713
transfectants generally failed to yield conidia, while
cankers
produced by AE7B713 transfectants did yield a very low level of
stromal pustules and recoverable viable conidia. Nevertheless,
it is
clear that the contribution of ORF B to differences in host
phenotypic
changes caused by CHV1-EP713 and CHV1-Euro7 extended
to canker
morphology, size, and spore
production.
 |
DISCUSSION |
Numerous surveys of European and North American C. parasitica field isolates have revealed considerable variability
in virulence and morphological traits (16, 18, 20, 31).
Contributors to diversity include hypovirulence and associated symptoms
linked to mitochondrial dysfunction (32, 33) or infection by
a variety of virus-like dsRNAs, including those of hypoviruses
(14, 20, 36, 37). Recent detailed analyses have revealed
considerable differences in the spectrum and severity of
hypovirulence-associated symptoms even for C. parasitica
strains infected with hypoviruses that are related at the nucleotide
level (25, 27; this study). The construction and
manipulation of an infectious CHV1-Euro7 cDNA, as described in this
report, illustrate how this diversity in phenotypic traits and
conservation of nucleotide sequence can be exploited to examine issues
such as the relative contributions of viral and host genomes to
hypovirulence-associated symptom expression and to map viral
hypovirulence determinants.
The question of the relative contributions of hypovirus and C. parasitica host genomes to hypovirulence-associated symptom expression has been difficult to approach. The introduction of different hypoviruses into specific virus-free C. parasitica
strains by anastomosis complicated interpretation due to the potential transmission of organelles or nuclear genetic information along with
hypovirus RNA. The availability of infectious cDNA clones of related
hypoviruses derived from infected C. parasitica strains that
exhibited very distinct phenotypes provided the opportunity for a more
rigorous examination of this issue. The observation that the
transfectants obtained resembled the hypovirulent strain from which the
infectious cDNA clone had been derived [e.g., strains EP155 and
Euro7(
v) transfected with CHV1-EP713 transcripts both resembled
hypovirulent strain EP713 (Fig. 2 and 4 and Tables 1 and 2)] clearly
indicates that the viral genome is the primary contributor to the
morphological differences observed between hypovirulent C. parasitica strains EP713 and Euro7. However, subtle contributions
by the host genomes were also observed. For example, strain Euro7(
v)
infected with the CHV1-Euro7 virus produced considerably more spores on
chestnut stem tissue than did strain EP155 transfected with the same
infectious transcripts (Table 2). The combined results present several
implications for the field release of natural and transgenic
hypovirulent strains.
While hypoviruses are transmitted via anastomosis to vegetatively
compatible virulent C. parasitica strains, transgenic
hypovirulent strains which contain a chromosomally integrated hypovirus
cDNA can also transmit virus to ascospore progeny (7). For
effective biological control, hypoviruses must be effectively
transmitted from the field-released hypovirulent strain throughout the
virulent strain population. This process, for both natural and
transgenic hypovirulent strains, results in the generation of a
spectrum of hypovirus-fungal host genomic combinations. The results
observed in this study concerning the relative contributions of
C. parasitica and hypovirus genomes to the level of
hypovirulence and the spectrum of associated traits agree with
conclusions reached earlier by Elliston based on an extensive series of
anastamosis transmission studies (17-19). Combined, these
results predict that as natural or cDNA-derived hypovirus RNA
disseminates throughout the fungal population, the characteristics of
the hypovirulent strains generated will primarily reflect the
contributions of the viral genome. Of course, extensive testing of
infectious hypovirus cDNAs in a larger number of fungal hosts, now in
progress, is required to fully confirm this prediction.
The ability to produce viable chimeras from the infectious CHV1-EP713
and CHV1-Euro7 cDNAs provides a potentially powerful tool for mapping
viral determinants responsible for the differences in
hypovirulence-associated symptoms conferred by these two viruses. Use
of the AE7B713 and A713BE7 chimeras to map these differences almost
exclusively to ORF B (Fig. 2 and 4 and Table 1 and 2) firmly
established the utility of this approach. This result was somewhat
surprising in light of previous reports that the p29 portion of
CHV1-EP713 contributes to virus-mediated reductions in orange
pigmentation and asexual sporulation (15, 25). The fact that
the differences in symptom expression observed for the two viruses
mapped almost exclusively to ORF B indicates that the ORF A portions of
the two viruses make similar contributions to the overall level of
symptom expression. It is anticipated that the mapping of determinants
responsible for differences in symptom expression will ultimately lead
to the identification of the domains that are directly responsible for
the underlying symptoms. Preliminary detailed mapping studies suggest
that different portions of ORF B may influence virulence to a greater
extent than they influence associated traits, such as reduced
sporulation or mycelial growth. Thus, it may be possible to further
uncouple hypovirulence from associated traits by appropriate swapping
of hypovirus coding domains.
Several lines of evidence suggest that one of the primary ways in which
hypovirus infection alters host phenotype is by an alteration of
cellular G protein-linked, cyclic AMP-mediated signal transduction
(10, 11, 21). It is anticipated that an extension of the
chimeric mapping approach will provide the most efficacious route to
the identification of hypovirus determinants responsible for an
alteration of cellular signaling pathways. Such studies will be aided
by the availability of promoter regions from C. parasitica
genes previously identified as being transcriptionally regulated in
response to hypovirus infection and/or perturbation of G protein-linked
signal transduction (10).
MacDonald and Fulbright (31) have discussed the view that
successful hypovirulence-mediated biological control requires a
continual reservoir of hypovirulent inoculum. They further noted that
hypovirulent strains that have been used in most North American biological control efforts, while highly curative, were quite debilitated in their ability to colonize and produce spores on chestnut
bark, resulting in limited persistence. In this regard, limited
persistence (2 years) of transgenic hypovirulent strains containing an
integrated cDNA copy of CHV1-EP713 was recently reported after a
single-season release (2). As noted elsewhere (30a) and as partially confirmed in this report (Fig. 4 and
Table 2), CHV1-Euro7-infected C. parasitica strains differed
from strains infected with CHV1-EP713 in precisely those properties
that are predicted to have a direct impact on persistence: colonization of and spore production on bark tissue. By use of the infectious CHV1-Euro7 cDNA to construct transgenic hypovirulent C. parasitica strains, it will be possible to combine properties of
enhanced colonization and spore production with a novel mode of virus
transmission to ascospore progeny. Future potential enhancements for
biological control may also be derived by the construction of
transgenic hypovirulent strains with chimeras of CHV1-EP713 and
CHV1-Euro7 or additional infectious hypovirus cDNAs as they become available.
 |
ACKNOWLEDGMENT |
This work was funded by grant GM55981 from the National
Institutes of Health to D.L.N.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Center for
Agricultural Biotechnology, University of Maryland Biotechnology
Institute, Plant Sciences Building, Room 5115C, College Park, MD
20742-4450. Phone: (301) 405-0334. Fax: (301) 314-9075. E-mail:
nuss{at}umbi.umd.edu.
 |
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Journal of Virology, February 1999, p. 985-992, Vol. 73, No. 2
0022-538X/99/$04.00+0
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