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Journal of Virology, February 1999, p. 1392-1398, Vol. 73, No. 2
0022-538X/99/$00.00+0
Coxsackievirus and Adenovirus Receptor
Amino-Terminal Immunoglobulin V-Related Domain Binds Adenovirus
Type 2 and Fiber Knob from Adenovirus Type 12
Paul
Freimuth,*
Karen
Springer,
Chris
Berard,
Jim
Hainfeld,
Maria
Bewley, and
John
Flanagan
Biology Department, Brookhaven National
Laboratory, Upton, New York 11973
Received 17 June 1998/Accepted 6 November 1998
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ABSTRACT |
The extracellular region of the coxsackievirus and adenovirus
receptor (CAR) is predicted to consist of two immunoglobulin (Ig)-related structural domains. We expressed the isolated CAR amino-terminal domain (D1) and a CAR fragment containing both extracellular Ig domains (D1/D2) in Escherichia coli. Both
D1 and D1/D2 formed complexes in vitro with the recombinant knob domain
of adenovirus type 12 (Ad12) fiber, and D1 inhibited adenovirus type 2 (Ad2) infection of HeLa cells. These results indicate that the
adenovirus-binding activity of CAR is localized in the amino-terminal IgV-related domain and confirm our earlier observation that Ad2 and
Ad12 bind to the same cellular receptor. Preliminary crystallization studies suggest that complexes of Ad12 knob bound to D1 will be suitable for structure determination.
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INTRODUCTION |
Characterization of the molecular
basis for virus attachment to cells has importance both for
understanding virus tropism and for developing agents that inhibit
virus binding or alter the specificity of binding. Recently, a cellular
receptor for adenovirus type 2 (Ad2) and other closely related
serotypes was identified. This receptor, encoded by a single gene on
human chromosome 21 (17), is a 46-kDa glycoprotein which
also serves as a receptor for group B coxsackieviruses (CBV) (4,
13, 25) and thus was termed the coxsackievirus and adenovirus
receptor (CAR). CAR mRNA is present in varying abundance in many human
tissues (5, 25). A broad tissue distribution of CAR protein
expression correlates with the broad tropism of CBV (19),
but subgroup C adenoviruses that are known to bind CAR have a much more
restricted tropism, limited primarily to the upper respiratory tract
(18). Thus, other factors in addition to receptor
availability clearly have important roles in determining adenovirus
tropism. Although adenovirus binds to CAR with high affinity (17,
28), virus titers are significantly reduced on cells with
down-regulated CAR expression (10). These results suggest
that adenovirus infection in vivo may be restricted to cells which
express CAR at levels above a minimum threshold concentration. CAR
protein levels are relatively low on the apical surfaces of
differentiated (ciliated) respiratory epithelial-cell cultures
(32), which may account for the poor efficiency of
adenoviral gene transfer to human lung tissue in vivo (8, 11, 14,
31, 33).
Adenovirus binding to CAR results from an interaction between viral
fibers, rod-shaped proteins located at the capsid vertices, and the
extracellular region of CAR. The distal, carboxy-terminal end of fiber
consists of a globular domain, termed the knob, which has
receptor-binding activity (23). The knob domain of Ad5 was expressed in Escherichia coli as a soluble, trimeric,
biologically active protein (12), and its 3-dimensional
structure was determined by X-ray crystallography (29). The
predicted amino acid sequence of CAR (4) suggests a
structure consisting of two extracellular domains related to the
immunoglobulin V (IgV) and IgC2 domain folds (6), a single
membrane-spanning region, and one carboxy-terminal cytoplasmic domain.
Regions of CAR necessary for binding the fiber knob domain have not yet
been determined.
We report here the expression in E. coli of the fiber knob
from Ad12 and fragments of human CAR corresponding to the extracellular immunoglobulin-like domains. The isolated amino-terminal IgV-related CAR domain (D1) and the entire extracellular region (D1/D2) both formed
complexes with Ad12 knob, and D1 inhibited infection of HeLa cells by
Ad2, indicating that D1 alone is sufficient for the adenovirus-binding
activity of intact CAR. Infection of HeLa cells by Ad2 also was
inhibited by Ad12 knob, complementing our earlier report that native
Ad2 fibers inhibit infection by Ad12 and supporting the conclusion that
CAR also serves as the major attachment receptor for Ad12, a subgroup A
adenovirus (1). The recombinant protein fragments we
describe provide a means to determine the 3-dimensional structure of
the fiber-CAR complex by X-ray crystallography and to screen for
antiviral agents that may interfere with virus attachment to cells.
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MATERIALS AND METHODS |
Expression and purification of Ad12 knob.
A DNA fragment
encoding the entire Ad12 fiber knob domain and several flanking amino
acids from the fiber shaft (amino acids 401 to 587) was amplified from
viral DNA by PCR (30 cycles at 94°C for 30 s, 55°C for 40 s, and 72°C for 60 s) using forward primer 1, CATATGAGCAACACTCCATACG, and reverse primer 2, GGATCCTTATTCTTGGGTAATGT (Fig.
1a). The PCR product was cloned between
the NdeI and BamHI sites of vector pET15b
(Novagen) and transformed into strain BL21-DE3 (Novagen) for expression
of the hexahistidine-tagged knob protein. Overnight cultures in
Luria-Bertani (LB) broth containing 150 mg of penicillin G
(Sigma)/liter were diluted 100-fold into fresh LB-penicillin broth and
grown at 37°C until mid-log phase (optical density of 0.8 at 600 nm),
at which time they were chilled to 24°C and adjusted to 50 µM
isopropyl
-D-thiogalactopyranoside (IPTG) to induce knob
expression. After shaking (250 rpm) overnight at 24°C, the cells were
collected by centrifugation, resuspended in 10% of the original
culture volume of STE (10 mM Tris-HCl [pH 8.0], 100 mM NaCl, 1 mM
EDTA) containing 100 µg of lysozyme/ml, and subjected to three cycles
of freezing and thawing. The viscous cell lysate was then sonicated and
cleared by centrifugation at 25,000 × g for 10 min.
Knob was precipitated from the supernatant by the addition of solid
ammonium sulfate to 35% saturation (25°C), dialyzed against several
changes of 10 mM Tris-HCl (pH 7.5), and passed over a column of
DEAE-cellulose (DE52; Whatman) equilibrated in the same buffer. Knob
was recovered from the flowthrough fractions essentially free of
contaminating E. coli proteins and nucleic acids, and was
further purified by Ni-nitrilotriacetic acid (NTA) affinity
chromatography according to the manufacturer's instructions (Qiagen).
Typically, >100 mg of purified Ad12 knob is obtained from 1 liter of
bacterial culture.

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FIG. 1.
Cloning of the Ad12 fiber knob and the extracellular
domains of human CAR. (a) The Ad12 knob domain (line) begins at a
conserved Thr-Leu-Trp-Thr motif (amino acids 409 to 412) and extends to
the fiber protein carboxy terminus (Glu587). A fragment of Ad12 DNA
encoding the entire knob domain and several amino acids from the
preceding fiber shaft region (striped box) beginning at Ser401 was
amplified by PCR using forward primer 1 and reverse primer 2. The
resulting PCR product was cloned between the NdeI and
BamHI sites of pET15b. (b) The human CAR protein consists of
an amino-terminal signal peptide (open box), two extracellular
Ig-related domains (D1 and D2), a membrane-spanning region (TM), and a
cytoplasmic domain (CYT). cDNA fragments encoding D1 and D1/D2 were
amplified by PCR using forward primer 3 and reverse primers 4 and 5. The resulting PCR products were cloned between the NcoI and
XhoI sites of pET20b. Similar D1- and D1/D2-encoding cDNA
fragments were amplified by PCR using forward primer 6 and reverse
primers 7 and 8. The resulting PCR products were cloned between the
NdeI and BamHI sites of pET15b. (c) pET vectors
for protein expression in E. coli. The open and filled boxes
represent bacterial signal peptides and hexahistidine tags,
respectively. The restriction sites used in this study are shown, and
the sequence of the pET15b-encoded 22-amino-acid carboxy-terminal
extension of sD1 is given in single-letter code.
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Expression and purification of CAR protein fragments.
cDNA
fragments encoding the human CAR extracellular domains (D1 and D1/D2
[Fig. 1b]) were amplified by reverse transcription-PCR of total RNA
from a mouse A9 cell line transformed with multiple copies of the
cloned human CAR gene (to be described elsewhere) and correspond
exactly to the CAR cDNA sequence in GenBank file Y07593. First-strand
cDNA synthesis was primed by oligo(dT). Primers 3 through 5 (CCATGGGTATCACTACTCCTGAAGAGA, CTCGAGCGCACCTGAAGGCTTA, and CTCGAGTGAAGGAGGGACAAC, respectively [Fig. 1b])
were designed for cloning D1- and D1/D2-encoding PCR products between
the NcoI and XhoI sites of expression vector
pET20b (Novagen). The PCR cycling program was identical to that used
for Ad12 knob. These same PCR products also were cloned into pET15b as
NcoI-XhoI restriction fragments and thus lacked
the vector-encoded hexahistidine tag but had 22-amino-acid
carboxy-terminal extensions that were encoded by vector sequences
downstream of the XhoI site (Fig. 1c). Primers 6 through 8 (CATATGGGTATCACTACTC, GGATCCTACGCACCTGAAGGCT, and GGATCCTATCCAGCTTTATTTGAAG, respectively [Fig. 1b]) were
designed to adapt the CAR PCR products for cloning between the pET15b
NdeI and BamHI restriction sites, which provides
for attachment of the amino-terminal hexahistidine tag to the expressed
proteins. Stop codons were built into the reverse primers in order to
avoid synthesis of the CAR fragments with the vector-encoded
carboxy-terminal extensions.
The procedure used for expression of the initial pET15b-D1 construct
(PCR product from primers 3 and 4) was similar to that
described above
for Ad12 knob except that the culture was induced
at 18°C. Soluble D1
(sD1) was precipitated from cleared cell lysates
by ammonium sulfate
precipitation (35 to 60% cut; 25°C) and was
partially purified by
anion-exchange chromatography (DE52) in
10 mM Tris-HCl buffer (pH 7.5).
About 5 mg of partially purified
sD1 was recovered from 1 liter of
bacterial culture. The hexahistidine-tagged
CAR fragments expressed
from the second set of pET15b constructs
(by using primers 6 through 8)
were insoluble but were recovered
from inclusion bodies. Cultures were
induced at 37°C, and cleared
lysates were prepared as described
above. After centrifugation,
the supernatant was discarded, and the
pellet was washed several
times in STE containing 0.1% Nonidet P-40,
dissolved in 8 M urea-50
mM

-mercaptoethanol-50 mM Tris-HCl (pH
9.2) (20 ml per liter
of initial culture), and then diluted with 15 volumes of 20 mM
Tris-HCl (pH 8.0). The slightly hazy solution was
passed through
a 10-ml bed volume of DEAE-Sepharose Fast Flow
(Pharmacia) equilibrated
in 20 mM Tris-HCl (pH 8.0). Approximately half
of the bound CAR
fragments eluted with 50 mM NaCl and were essentially
pure. The
remaining bound CAR eluted with 300 mM NaCl along with
contaminating
E. coli proteins and was
discarded.
Assays for detection of knob-CAR complexes.
Metal affinity
chromatography was used to detect the association of knob with
His-tagged refolded CAR fragments or the association of sD1 with the
His-tagged knob. The hexahistidine tag was cleaved from Ad12 knob by
using biotinylated thrombin and was then passed through Ni-NTA and
avidin columns in order to remove residual His-tagged proteins and
thrombin. The resulting knob was mixed with purified Ad2 hexon protein
and then divided into three equal samples. His-tagged D1 or D1/D2 was
then added to two of the samples, and an equivalent volume of buffer
was added to the third (control) sample. Each sample was then
batch-adsorbed to Ni-NTA beads, washed, and eluted with 100 mM EDTA-25
mM Tris-HCl (pH 8.0). Samples were then electrophoresed in sodium
dodecyl sulfate (SDS)-polyacrylamide gels and stained with Coomassie
blue. Alternatively, His-tagged knob was added to a partially purified
preparation of sD1, and the mixture was then chromatographed on a
Ni-NTA column and processed as described above.
Inhibition of Ad2 infection of HeLa cells.
HeLa monolayer
cultures were grown in 50% Dulbecco's modified Eagle medium (DMEM;
Gibco)-50% Ham's F-12 Nutrient Mixture (Gibco) containing 10% calf
serum. Monolayers were seeded in 24-well cluster plates 1 day before
infection. Ad2 diluted in binding buffer (50% DMEM-50%
phosphate-buffered saline [PBS]-0.4% bovine serum albumin) was
divided into three equal samples and mixed with an equal volume of Ad12
knob, sD1 (both at approximately 2 mg/ml in PBS), or binding buffer.
Each preparation was adsorbed in triplicate (0.2 ml/well) for 30 min at
4°C, and the wells were then washed twice with PBS and incubated for
2 days at 37°C in DMEM containing 2% calf serum. The number of
infected cells in each culture was then determined by immunoassay for
the viral hexon antigen as previously described (2). To
control for possible cytotoxic effects of the recombinant proteins,
additional sets of cultures were preincubated with Ad12 knob or sD1 (1 mg/ml) in binding buffer for 30 min, washed twice with PBS, and then
infected with Ad2.
Analysis of Ad12 knob by STEM.
The mass of Ad12 knob (with
the His tag removed) was measured by scanning transmission electron
microscopy (STEM). Five microliters of the purified protein (~10
µg/ml) was applied to an electron microscope holey grid covered with
thin (~2-nm) carbon, and after 1 min was wicked and washed 10 times
with 20 mM ammonium acetate. The grid was blotted and rapidly frozen in
liquid nitrogen slush, then freeze-dried overnight. Data were collected
with the Brookhaven National Institutes of Health (NIH) Biotechnology
Resource STEM (26) at a scan width of 0.512 µm, with a
dose of 200 electrons/nm2. Protein particle masses were
measured (27) off-line by using the PC-Mass program, and
statistics and curve fitting were generated with SigmaPlot. Mass
calibration was carried out by using tobacco mosaic virus particles
that adhered to the grid before the sample was applied.
Gel filtration analysis of Ad12 knob, sD1, and knob-sD1
complexes.
The native molecular masses of His-tagged Ad12 knob,
sD1, and knob-sD1 complexes were estimated by size exclusion
chromatography using a Superose 6 gel permeation column. Aliquots (20 µl) of purified proteins or protein complexes were chromatographed at 0.3 ml/min in 20 mM Tris-HCl (pH 7.8)-200 mM NaCl-1 mM
dithiothreitol-0.1 mM EDTA. Aliquots of the fractions were analyzed by
SDS-polyacrylamide gel electrophoresis (PAGE). These experiments were
run over a range of protein (monomer) concentrations from 1 to 500 µM. Molar extinction coefficients of 2.61 × 104 and
1.34 × 104 were calculated for monomers of His-tagged
Ad12 knob and sD1, respectively, according to a published method
(22). His-tagged knob-sD1 complexes eluted from a Ni-NTA
column were separated from excess uncomplexed His-tagged knob by
anion-exchange chromatography at pH 7.5, a condition under which the
complexes bind to the ion exchanger but the free knob does not.
Complexes were eluted with 100 mM NaCl in 10 mM Tris (pH 7.5) and were
then chromatographed on a Superose 6 column.
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RESULTS |
Expression and purification of CAR extracellular fragments.
To
localize the adenovirus-binding activity of CAR, fragments
corresponding the amino-terminal CAR IgV domain (D1) and the combined
IgV plus IgC2 domains (D1/D2) were expressed in E. coli. A
cDNA fragment coding for D1 (Fig. 1b) was cloned into pET20b, an
expression vector designed to export expressed proteins into the
E. coli periplasmic space (Fig. 1c), but synthesis of D1
(expected molecular size, about 16 kDa) was undetectable (data not
shown). When the initial construct was enlarged to include the
downstream IgC2 domain, however, the resulting D1/D2 polypeptide was
overexpressed but was insoluble in E. coli cells grown at
temperatures ranging from 18 to 37°C (data not shown). These results
imply that the amino-terminal domain (D1) specified by the initial
construct also entered the secretory pathway but probably was rapidly
degraded in the periplasmic space.
To determine if D1 could be stabilized by restricting its synthesis to
the cytoplasm, the D1-encoding PCR product was transferred
as an
NcoI-
XhoI restriction fragment from pET20b into
pET15b.
Because of restriction site differences between these two
expression
vectors (Fig.
1c), the CAR protein fragment specified by the
resulting
construct (pET15b-sD1) had a vector-encoded 22-amino-acid
carboxy-terminal
extension, and it lacked the amino-terminal
hexahistidine tag
that is normally attached to proteins expressed from
pET15b. The
D1 fragment accumulated to moderate abundance at 37°C in
BL21-DE3
cells transformed with pET15b-sD1 but was completely insoluble
(data not shown). When the cultures were induced at 18°C, however,
a
significant amount of D1 was contained in the soluble fraction
of cell
lysates (Fig.
2). The larger CAR cDNA
fragment encoding
D1/D2 also was transferred from pET20b into pET15b,
but none of
the expressed protein was detected in the soluble fraction
of
cell lysates (Fig.
2).

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FIG. 2.
D1 and D1/D2 expression and solubility in the E. coli cytoplasm. BL21-DE3 cells transformed with pET15b-D1 (lanes 4 to 6) and pET15b-D1/D2 (lanes 1 to 3) (PCR products from reactions with
primers 3 through 5 [Fig. 1b]) were induced with IPTG at 18°C.
Protein contents of whole-cell lysates (W) and of the soluble (S) and
insoluble (P) fractions of cell sonicates were analyzed by SDS-PAGE.
The molecular sizes (in kilodaltons) of protein standards loaded in
lane M are indicated. A sample of purified Ad12 knob was loaded in lane
K.
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To determine if removal of the vector-encoded carboxy-terminal
extension would increase the yields of soluble CAR fragments
produced
in the
E. coli cytoplasm, cDNA fragments encoding D1
and
D1/D2 were amplified with new primer sets (primers 6 through
8 [Fig.
1b]) that introduced downstream stop codons and also fused
the
proteins to the pET15b vector-encoded amino-terminal hexahistidine
tag.
Both CAR fragments were overexpressed but were insoluble
at culture
growth temperatures between 18 and 37°C (data not shown),
suggesting
that the carboxy-terminal extension specified by the
initial pET15b-sD1
construct may enable the IgV domain to fold
into a soluble structure
within
E. coli cells. To further investigate
whether D1
solubility within intact
E. coli cells depends on the
presence of the 22-amino-acid C-terminal extension, the D1-encoding
insert was transferred from pET15b-sD1 into pET11a as an
NdeI-
BamHI
fragment (Fig.
1c), removing both the
N-terminal hexahistidine
tag and the 22-residue C-terminal extension.
BL21-DE3 cells transformed
with the resulting pET11a-D1 construct
overexpressed D1, but the
D1 fragment again was completely insoluble
(Fig.
3). Taken together,
these data
indicate that D1 solubility in
E. coli cells is enhanced
by
the pET15b-encoded 22-amino-acid carboxy-terminal extension.

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FIG. 3.
D1 solubility in the E. coli cytoplasm.
BL21-DE3 cells transformed with pET11a-D1 (D1-11a) or pET15b-sD1
(sD1-15b) were induced with IPTG at 18°C. The protein content of
whole-cell lysates (W) and that of the soluble fraction of cell
sonicates (S) were analyzed by SDS-PAGE. The molecular weights (in
thousands) of protein standards loaded in lane
Mr are indicated.
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sD1 was partially purified from lysates of pET15b-sD1-transformed
BL21-DE3 cells by ammonium sulfate precipitation and
anion-exchange
chromatography. The insoluble,
hexahistidine-tagged D1 and D1/D2
CAR fragments were both refolded from
urea-solubilized inclusion
bodies and were purified to apparent
homogeneity by Ni-NTA affinity
chromatography and anion-exchange
chromatography.
Biological activity of CAR extracellular fragments.
To examine
the activity of the refolded D1 and D1/D2 CAR fragments, we determined
whether they could form specific complexes with recombinant fiber knob
from Ad12. We previously reported that infection of HeLa cells by Ad12
is inhibited by purified native fiber protein from Ad2 (1),
suggesting that CAR serves as the major attachment receptor for both
Ad2 and Ad12. A fragment of Ad12 DNA coding for the fiber knob domain
(Fig. 1a) was cloned in pET15b. Ad12 knob was abundantly expressed
following IPTG induction of cultures at 37°C but accumulated entirely
within the insoluble fraction of cell lysates. When cultures were
induced at 24°C, however, the majority of knob was in the soluble
fraction. The knob was purified by ammonium sulfate precipitation and
anion-exchange chromatography (see Fig. 2, lane K), and the His tag was
removed by digestion with thrombin. Ad12 knob was then incubated with the refolded His-tagged D1 or D1/D2 in the presence of purified Ad2
hexon protein (included as a specificity control). The mixtures were
then adsorbed to Ni-NTA beads in order to capture the His-tagged CAR
fragments. In control incubations lacking the CAR fragments, Ad12 knob
and Ad2 hexon both failed to bind to Ni-NTA beads, but in the presence
of His-tagged D1 or D1/D2, Ad12 knob was retained on the Ni-NTA beads
whereas Ad2 hexon was not (Fig. 4A).
Although these results were qualitatively reproducible, the relative
amounts of knob and CAR components that eluted from Ni-NTA beads varied in different experiments, possibly resulting from structural
heterogeneity in different preparations of the refolded D1 and D1/D2
proteins.

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FIG. 4.
Formation of complexes between CAR fragments and Ad12
knob. (A) Insoluble His-tagged D1 and D1/D2 fragments were refolded,
purified, and incubated with a mixture of Ad12 knob (His tag removed by
thrombin cleavage) and native Ad2 hexon. CAR fragments were omitted
from a control incubation ( CAR). A sample of each mixture was loaded
in lanes marked , and the remainder was then incubated with Ni beads.
The beads were washed to remove unbound proteins, and bound material
was eluted by boiling in SDS-PAGE sample buffer and loaded into lanes
marked +. The positions in the gel of hexon and Ad12 knob (H and K) and
the molecular sizes (in kilodaltons) of standards loaded in lane M are
indicated. (B) sD1 was partially purified and mixed with purified
His-tagged Ad12 knob (lane 1). The mixture was then adsorbed to Ni
beads, and a sample of the unbound proteins was loaded in lane 2. Bound
proteins were eluted from the beads by boiling in SDS-PAGE sample
buffer and were loaded in lane 3. Molecular size standards were loaded
in lane M.
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To avoid complications that might result from heterogeneity of refolded
CAR fragments, we focused our efforts on characterization
of sD1, which
is synthesized in
E. coli as a soluble protein fragment.
Purified, His-tagged Ad12 knob was mixed with a partially purified
preparation of sD1 and incubated briefly to allow protein complexes
to
form. The mixture was then applied to a column of Ni-NTA beads,
unbound
proteins were washed from the column, and the bound fraction
was eluted
with EDTA. As shown in lane 3 of Fig.
4B, sD1 and His-tagged
knob were
the major protein species that eluted from the Ni-NTA
column. The
relative amounts of sD1 and knob shown in Fig.
4,
lane 3, do not
represent the actual stoichiometry of the knob-sD1
complex because
excess knob was added to the crude sD1 preparation
(Fig.
4, lane 1).
Taken together, these experiments support the
conclusion that the D1
domain alone is sufficient for the knob-binding
activity of
CAR.
To determine if the in vitro interaction of Ad12 knob with the D1
domain of CAR represents physiologically relevant binding,
the ability
of the recombinant proteins to inhibit Ad2 infection
of HeLa cells was
tested. As shown in Fig.
5, Ad2
infectivity
was significantly inhibited when either sD1 or Ad12 knob
was included
in the virus inoculum during virus adsorption. No
inhibition of
infection was observed in cell cultures that were
pretreated with
sD1 and then washed prior to virus adsorption,
indicating that
the inhibitory activity of sD1 does not result from a
cytotoxic
effect on cells. Cells similarly pretreated with Ad12 knob,
however,
were still partially refractory to infection by Ad2 virus,
most
likely resulting from incomplete dissociation of knob-CAR
complexes
on cells rather than from a cytotoxic effect of knob. The
approximately
equal inhibition by sD1 and Ad12 knob indicates that
interaction
of viral fibers with CAR is the predominant route to
infection
of HeLa cells and that alternate, CAR-independent infections
(e.g.,
resulting from direct binding of virus to integrins) are rare
in
this system. Thus, the binding specificity of native fiber
and CAR is
reconstituted in the recombinant Ad12 knob and sD1
proteins.

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FIG. 5.
Binding activity of sD1 and Ad12 knob. HeLa cell
monolayers were infected with about 200 focus-forming units of Ad2 per
well in the presence or absence of sD1 or Ad12 knob. After incubation
of the infected cultures for 2 days at 37°C, monolayers were fixed,
stained with rabbit anti-hexon serum, counterstained with horseradish
peroxidase-goat anti-rabbit IgG, and developed with diaminobenzidine.
The number of infected cells in triplicate wells was then counted and
plotted (mean ± standard deviation). Control cultures were
pretreated with sD1 or knob (pre-sD1 or pre-Knob) and then washed prior
to infection.
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Physical characteristics of Ad12 knob and CAR domains.
Analysis of heat-denatured and unheated samples of Ad12 knob by
SDS-PAGE showed bands of 20 and 60 kDa, respectively (Fig. 6 inset,
lanes 1 and 2), suggesting that, like the
Ad5 fiber knob (12), the Ad12 knob is trimeric. To confirm
this result, a sample of Ad12 knob was examined in the Brookhaven
STEM, which measures the mass per unit length of macromolecules.
In good agreement with the PAGE results, STEM analysis showed that the
Ad12 knob has a mass of 60.6 kDa (Fig. 6).

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FIG. 6.
Mass measurement of Ad12 knob by STEM. A sample of
purified Ad12 knob protein (with the hexahistidine tag removed) was
examined by STEM, and a mean mass of 60.6 kDa (n = 839)
for individual molecules was determined as described in Materials and
Methods. (Inset) SDS-PAGE analysis of Ad12 knob samples that were heat
denatured (lane 1) or unheated (lane 2) before electrophoresis under
reducing conditions.
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Size exclusion chromatography was performed to estimate the sizes of
sD1, Ad12 knob, and complexes of sD1 and Ad12 knob under
nondenaturing
conditions (Fig.
7). Ad12 knob eluted at
a position
consistent with a 60-kDa globular protein, in good agreement
with
the STEM and PAGE analyses. Surprisingly, sD1 also eluted at
nearly
the same position as the 60-kDa knob, suggesting either that sD1
is a multimeric globular protein or that it has an elongated shape.
sD1
is unlikely to have an elongated shape given the predicted
Ig-related
(globular) fold of CAR. sD1 multimers could take the
form of dimers, as
was recently shown for the amino-terminal IgV-related
domain of
intercellular adhesion molecule 1 (ICAM-1) (
7), or
possibly
higher oligomers such as dimers of dimers, which would
better fit the
observed molecular size of about 60 kDa (4 × 16
kDa). Both Ad12
knob and sD1 eluted as sharp, symmetrical peaks,
demonstrating the
stability and homogeneity of their folded conformations.
An
approximately equimolar mixture of Ad12 knob and sD1 proteins
(based on
monomers) eluted as a major peak at a position indicative
of a globular
protein of about 120 kDa and a minor peak at the
position of the
uncomplexed knob and sD1 components (60 kDa).
Knob-sD1 complexes that
were first purified by anion-exchange
chromatography to remove excess
uncomplexed knob eluted from the
size exclusion column as a single,
symmetrical peak centered at
about 120 kDa (Fig.
7 inset), indicating
that the trailing 60-kDa
peak in the chromatogram of the knob-sD1
mixture shown in Fig.
7 corresponds to excess uncomplexed knob or sD1
component and
does not result from partial dissociation of the complex
during
chromatography. Although the resolution of this method is not
sufficient to unambiguously determine the stoichiometry of knob
and sD1
components in the complex, it clearly shows that the complex
is a
homogeneous molecular species and does not contain
high-molecular-weight
aggregates, forms that might be expected if one
or both multimeric
components exhibited multivalent binding.

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FIG. 7.
Size exclusion chromatography of His-tagged Ad12 knob,
sD1, and knob-sD1 complexes. Aliquots (20 µl) of His-tagged Ad12 knob
(dashed line), purified sD1 (dotted-and-dashed line), or an
approximately equimolar mixture of His-tagged Ad12 knob and sD1 (solid
line) were chromatographed on a Superose 6 gel filtration column at a
flow rate of 0.3 ml/min. The elution positions of size markers are
shown (ferritin, 440 kDa; bovine serum albumin dimer, 130 kDa; human
hemoglobin, 68 kDa; RNase A, 13 kDa). (Inset) Size exclusion
chromatogram of His-tagged Ad12 knob-sD1 complexes that were purified
by anion-exchange chromatography to remove excess uncomplexed knob
before chromatography on the Superose 6 column.
|
|
 |
DISCUSSION |
Amino acid sequence alignments show that CAR is an Ig superfamily
(IgSF) member (4, 25) with an extracellular aspect consisting of an amino-terminal IgV-related domain (D1) and an adjacent
IgC2-related domain (D2) (6). We expressed D1 and D1/D2 CAR
fragments in E. coli and found that adenovirus-binding activity was associated with D1. The D1 fragment bound to recombinant Ad12 fiber knob and inhibited infection of HeLa cells by Ad2. Other
IgSF members also serve as virus receptors, including ICAM-1, the
receptor for rhinovirus (24); PVR, the receptor for
poliovirus (20); and CD4, the receptor for human
immunodeficiency virus type 1 (16). In each of these cases,
the receptor amino-terminal domain also is related to the IgV domain
fold and has virus-binding activity. Based on these results, it is
expected that CBV also will bind to CAR through the D1 domain, thus
explaining the earlier observation that adenovirus and CBV compete for
cell binding sites (15). Confirmation of the putative
interaction of CBV with D1 will exclude the alternative model where CBV
binding to the D2 domain of CAR sterically hinders the binding of
adenovirus to D1. However, the IgC2-like D2 domain most likely
functions to support the D1 domain in a membrane-distal location, in
which case D2 may be relatively inaccessible to viruses. Determination of the structure of the D1/D2 fragment would reveal how the interaction between domains relates to the adenovirus- and CBV-binding activity of CAR.
The finding that CAR D1 forms a complex in vitro with the recombinant
knob domain of Ad12 fiber protein and that the Ad12 knob inhibits
infection of HeLa cells by Ad2 confirms our earlier conclusion that Ad2
and Ad12 (representatives of viral subgroups C and A, respectively)
bind to the same receptor. We previously showed that saturation of
receptors on HeLa cells with native fiber protein from Ad2 blocked the
subsequent binding of radiolabeled Ad12 virions and also inhibited
infection of the cells by Ad12 (1). Presumably, the knob
amino acids that form the interface with CAR are conserved in all
adenovirus serotypes that bind to CAR and are different in serotypes
which bind to a different receptor. The crystal structure of the Ad5
knob revealed two different molecular features that were proposed to be
potential receptor-binding sites, a central threefold symmetric cavity
formed by the trimer interface and three identical cavities, one
associated with each polypeptide subunit, located around the knob
perimeter (30). However, it was not possible to conclude
which of these two alternate sites corresponded to the receptor-binding
site based on alignment of knob amino acid sequences from different
adenovirus serotypes (30). Determination of the structure of
the Ad12 knob complexed to CAR D1 would directly identify the amino
acids of each of the proteins that form the receptor-knob interface.
The importance of these amino acids to knob-CAR binding could readily
be tested through site-directed mutagenesis of the recombinant proteins we describe here.
The subgroup B adenoviruses (e.g., types 3 and 7) do not cross-compete
with subgroup C viruses for cell binding sites (9), and the
subgroup B and C knob sequences differ significantly in both regions
that could define receptor-binding specificity (30). It will
be of interest to determine whether the cellular receptor for the
subgroup B adenoviruses also is an IgSF member or whether the
structural framework of the fiber knob, which probably is similar in
all serotypes, can support the evolution of binding sites that are
complementary to cell surface molecules with physical characteristics
that are distinct from those of Ig domains. Binding of the receptor to
the threefold symmetric central cavity formed by the knob trimer
interface might restrict the range of potential receptors to a
particular class of molecules, for example, those with corresponding
threefold symmetry or those possessing pseudo-threefold symmetry. In
this regard, the recent identification of CAR, an IgSF protein without
apparent threefold symmetry, as the adenovirus receptor suggests that
the knob central cavity may not correspond to the receptor-binding
site. Although the knob central cavity is an attractive
receptor-binding site based on its topological similarity to the
canyons on picornavirus capsids, the canyons differ significantly in
that they are formed from the interface of nonidentical protein
subunits and thus do not have threefold symmetry (21).
We found evidence that sD1 exits in solution as a multimeric protein,
but there is no evidence we are aware of indicating that native CAR
forms multimers on intact human cells or that CAR multimers are
required for adenovirus infection. It should be noted that all the CAR
fragments described here were produced in E. coli and
therefore are not glycosylated. Carbohydrate groups could mask regions
that, when exposed, might cause the proteins to aggregate, possibly
through hydrophobic interactions. Thus, D1 or D1/D2 multimers could be
artifacts of a recombinant protein system. Evidence has been reported
that the recombinant amino-terminal domain of ICAM-1 forms dimers
(3, 7), but it is not clear whether ICAM-1 dimers have
physiological relevance. Interestingly, the rhinovirus binding site on
the amino-terminal domain of ICAM-1 is not occluded in the dimer;
therefore, rhinovirus may be able to bind to a dimeric ICAM-1 receptor
(7).
The solubility of D1 within E. coli also depended on the
presence of a 22-amino-acid carboxy-terminal extension encoded by the
expression vector. Curiously, the D1 protein lacking this extension
precipitated within cells but could be refolded from urea-solubilized
inclusion bodies as a soluble active protein, suggesting either that
the conformations of the refolded and soluble D1 proteins are different
or that the 22-amino-acid extension aids folding of the nascent D1
polypeptide chain into a soluble conformation rather than enhancing the
solubility of the folded molecule. Recent data indicate that partial
removal of the carboxy-terminal extension by trypsin digestion does not
alter the solubility of sD1 (data not shown).
There were significant differences between expression of the Ad12 knob
in our system and expression of the Ad5 knob reported by Deisenhofer
and colleagues (12). The yield of soluble Ad12 knob (>100
mg/liter of culture) was about 20-fold greater than the yield reported
for Ad5 knob. This does not likely result from differences in the
expression systems that were used because we found that the Ad2 knob,
which is closely related in amino acid sequence to the Ad5 knob, also
was recovered in low yields from the soluble fraction of E. coli lysates (the majority of the Ad2 knob protein was in the
insoluble fraction) when expressed from the same pET vector systems and
under the same conditions as those reported here for the Ad12 knob
(data not shown). In addition, whereas the Ad5 knob was soluble in
bacteria grown at 37°C, the Ad12 knob was completely insoluble at
this temperature but was predominantly soluble when expressed at
24°C. Both Ad2 and Ad12 knob polypeptides were overexpressed to
approximately the same extent in our system; therefore, differences in
the yields of the soluble knob proteins must reflect differences in
knob folding and trimerization in bacterial cells. Optimization of Ad2
knob solubility through mutagenesis approaches could provide insights into intrinsic factors that regulate protein folding and
multimerization in vivo.
The soluble forms of CAR and knob described here have potential
applications as antiviral agents or as means to screen for novel drugs
that interfere with virus-CAR binding. In addition, D1-based reagents,
including D1-antibody fusion proteins or complexes, might be used to
retarget the binding of adenovirus gene delivery vectors to novel
cellular receptors.
 |
ACKNOWLEDGMENTS |
We thank M. Simon, B. Lin, and F. Kito for assistance with the
STEM experiments.
Research was supported by the Office of Biological and Environmental
Research of the U.S. Department of Energy under Prime Contract
DE-AC02-98CH10886 with Brookhaven National Laboratory and by NIH grant
AI36251 (to P.F.). STEM analysis was supported by grants from the NIH
and the U.S. Department of Energy Office of Health and Environmental Research.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Biology
Department, Brookhaven National Laboratory, Upton, NY 11973. Phone:
(516) 344-3350. Fax: (516) 344-3407. E-mail:
freimuth{at}bnl.gov.
 |
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