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Journal of Virology, December 1999, p. 9702-9709, Vol. 73, No. 12
0022-538X/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Endothelial Cell-Specific Transcriptional Targeting
from a Hybrid Long Terminal Repeat Retrovirus Vector Containing Human
Prepro-Endothelin-1 Promoter Sequences
Ute
Jäger,
Yuan
Zhao, and
Colin D.
Porter*
Chester Beatty Laboratories, Institute of
Cancer Research, London SW3 6JB, United Kingdom
Received 21 July 1999/Accepted 25 August 1999
 |
ABSTRACT |
For many applications, specificity of gene expression by
recombinant retroviral vectors is necessary. We wished to obtain transcriptional targeting in endothelial cells as part of an
antivasculature approach to cancer treatment and have achieved
specificity by using the promoter for human prepro-endothelin-1. In
particular, we have inserted this heterologous promoter within the 3'
long terminal repeat (LTR), replacing all viral upstream
transcriptional regulatory sequences, to generate a hybrid LTR with
precise fusion at the TATA box for initiation of transcription at the
viral start site. Reverse transcription and integration resulted in
duplication of this hybrid promoter in the 5' LTR of the provirus for
transcription of the internal transgene. An important feature of our
vectors is the absence of a selectable marker gene or additional
promoters to avoid potential complications of silencing or interference and because selection will be inappropriate for clinical application. This vector design showed endothelial cell specificity of
-galactosidase expression when tested on a panel of human cell lines
and primary breast microvascular endothelial cells, matching the
specificity of expression of the endogenous promoter. Such simplified
vectors exhibiting transcriptional specificity are likely to be useful for the development of a gene therapy approach to targeting tumor vasculature.
 |
INTRODUCTION |
Recombinant retroviral vectors have
found widespread use for gene delivery, both in vitro and in vivo. For
human gene therapy it will be important to develop means of systemic
application for in vivo transduction, requiring the ability to target
gene expression at the levels of both restricted delivery and
transcription. We are developing strategies for targeting tumor
vasculature as an approach to cancer gene therapy, since tumor growth
is dependent upon a blood supply and is associated with the switch to
the angiogenic phenotype (20). Endothelial cells forming the
tumor vasculature are suitable targets for cancer therapy due to the
high ratio of dependent tumor cells to endothelial cells.
Antiangiogenic drugs can slow tumor growth (24, 44), while
angiostatin and endostatin, endogenous inhibitors of angiogenesis, can
additionally cause tumor regression (6, 32, 33). The
dependence on cell division for integration and expression when using
murine retroviral vectors allows exploitation of the marked
differential in the proliferation rates of tumor and uninvolved
endothelial cells (11), providing one level of specificity.
However, restriction of expression to the intended target cells is an
essential consideration.
The U3 region of the murine leukemia virus (MLV) long terminal repeat
(LTR) contains the enhancer and promoter for transcription of the
integrated provirus from the 5' LTR. MLV enhancer function maps to a
75-bp direct repeat in U3, within which binding sites for six different
nuclear factors have been identified (36). The promoter
contains a CAAT box and TATA box. Most of the transcription factors
involved are ubiquitously expressed, accounting for the lack of any
marked cell specificity of the LTR (37), although replacement of U3 with that derived from related murine retroviruses can modify specificity (3, 10). Transcriptional targeting, however, necessitates expression of the transgene under the control of
heterologous sequences.
Vector design may influence the function of heterologous control
sequences (41). The majority of vectors in use incorporate selectable marker genes, often the neomycin resistance gene, although this can act as a transcriptional silencer (2). Many such
vectors retain a functional LTR, often in order to express the marker gene, and this can give rise to poor coexpression due to
transcriptional interference (15, 16). Attempts to address
this problem have involved deletion of LTR enhancer and/or promoter
sequences in the 3' LTR of the vector (8, 31, 45, 46), with
this modification becoming duplicated at the 5' end in the integrated
provirus to leave a single transcriptional unit driven by an internal
promoter. Alternatively, the entire transgene expression cassette can
be shielded from these sequences by insertion upstream of the LTR enhancer, in the "double-copy" strategy (22). A reduced
level of transcriptional specificity of the tyrosinase promoter has been obtained from a retroviral vector retaining an intact LTR (41). However, since selection will not be appropriate for
clinical application of systemically administered vectors, we decided
to omit a selectable marker gene from our vectors, thus avoiding such
problems. Moreover, characterization of vectors in vitro without
selection will be a more meaningful reflection of their behavior in vivo.
The transcriptional activity of the LTR itself can be modified by
addition of, or replacement with, heterologous enhancer and/or promoter
sequences. Thus, replacement of the viral enhancer with that of a
polyomavirus mutant selected to grow in embryonal carcinoma cells
(normally restrictive for MLV LTR function) yielded a hybrid LTR that
was functional in these cells (39). The strength of the
myeloproliferative sarcoma virus LTR could also be improved severalfold
by addition of the cytomegalovirus IE enhancer upstream of the viral
enhancer (40). However, addition of the muscle creatine
kinase enhancer between the viral enhancer and promoter resulted in
differentiation-specific expression in myogenic cells but failed to
block constitutive LTR function in some cells (18), while
incorporation of lymphoid cell-specific enhancers failed to modify
specificity (28). In contrast, replacement of the viral
enhancer with the tyrosinase enhancer and promoter did lead to specific
expression in melanoma cells (12, 42). In this study, we
explore the potential for deriving hybrid LTR retroviral vectors with
endothelial cell transcriptional specificity, in the absence of
selectable markers, by using the promoter for the human
prepro-endothelin-1 (ppET1) gene.
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MATERIALS AND METHODS |
Cell lines.
NIH 3T3 (murine fibroblasts), CPAE (calf
pulmonary artery endothelial cells), and PAE (porcine aorta endothelial
cells) cells and the human cell lines TE671 (rhabdomyosarcoma), HT1080
(fibrosarcoma), ECV304 (human umbilical vein endothelial cell [HUVEC]
derived), and EAhy926 (HUVEC derived, by fusion with A549 lung
carcinoma cells) were maintained in Dulbecco modified Eagle medium
supplemented with 10% fetal calf serum. FLY-A13 (9) and
TE-FLY-A8 (9a) amphotropic retroviral packaging cell lines
were similarly maintained. HMEC-1 (simian virus 40 T-antigen-transformed human dermal microvascular endothelial cells)
(1) were maintained in microvascular endothelial cell growth
medium (Clonetics Corp., obtained from TCS Biologicals). Primary breast
microvascular endothelial cells (a kind gift from C. Clarke and M. O'Hare, University College London) were obtained by selection with the
antibody Q-BEND/40 attached to magnetic beads and were maintained as
for HMEC-1; the cells were stained with CD31 for fluorescence-activated
cell sorter analysis at passage 5, confirming the retention of this
endothelial cell marker. HMEC-1 and EAhy926 were similarly confirmed to
be positive for CD31 expression, while TE671, HT1080, and ECV304 were negative.
Cloning of the human ppET1 promoter region.
ppET1 promoter
sequences were obtained following PCR amplification from genomic DNA
prepared from a human lymphoblastoid cell line. Two regions were
amplified: positions
177 to +33 and positions
177 to +158.
Numbering is based on EMBL database entry HSETN1 (27). The
forward primer (ETP5; see Fig. 1) was
5'-GCGAGATCTGCCTCTGAAGTTAGCAGTG, incorporating a
BglII restriction site; the reverse primers were 5'-GCAGGATCCGTTCGCCTGGCGCAGATG (ETP3A) and
5'-AAAGGGATCCTTCAGCCCAAGTGCCC (ETP3B), incorporating
BamHI restriction sites. PCR conditions were 30 cycles of
30 s at 94°C, 1 min at 60°C, and 30 s at 72°C. Amplified products were digested with BglII and
BamHI before being cloned into these sites in pSP72
(Promega). DNA sequencing confirmed the nature of the cloned promoter
regions, matching the reported sequence (25). To confirm the
function of the cloned regions, the BglII-BamHI
fragments were cloned into the BamHI site of the reporter
vector pGCAT-C (21). Transient transfection verified orientation-dependent promoter function in CPAE cells but not 3T3 cells
when expression of chloramphenicol acetyltransferase was assayed by an
enzyme-linked immunosorbent assay (Boehringer Mannheim) (data not shown).
Retroviral vector construction with a hybrid ppET1/LTR
promoter.
Plasmid p
BN, containing a neomycin resistance
(Neor) cassette and a single MLV LTR with a 3'-flanking
NotI restriction site, was derived by partial deletion of
sequences between the PstI sites in pBabeNeo
(29). The multiple-cloning site was subsequently destroyed
by digestion with BamHI and SalI, end repair with
Klenow polymerase, and religation. The 5.5-kb NheI fragment
from pMFGnlslacz (19) was inserted into the unique
NheI site to create pNeoMFGnlslacz, equivalent to
pMFGnlslacz but possessing a simian virus 40 Neor cassette
on the same plasmid, outside of the retroviral transcription unit, and
with the 3'-flanking NotI site to facilitate the exchange of
3' LTR sequences.
ppET1/LTR hybrids were constructed by cloning ppET1 promoter sequences
into p
BN and verified by DNA sequencing.
NheI-NotI fragments from the hybrids were used to
replace the 3' LTR in pNeoMFGnlslacz, following NotI and
partial NheI digestion. Three hybrids were made, as follows.
In the first two, the ppET1 promoter region from
177 to +33 was used
to replace the NheI-XbaI or
NheI-SstI fragment of p
BN. This region was
amplified from the cloned ppET1 promoter by using the forward primer
5'-ATAGCTAGCTCTGCCTCTGAAGTTAGCAGTG (ETP5Nhe) and the reverse
primers 5'-ATATCTAGACCGTTCGCCTGGCGCAGATG (ETP3AXba) and
5'-ATAGAGCTCCGTTCGCCTGGCGCAGATG (ETP3ASst), incorporating NheI, XbaI, and SstI restriction
sites, respectively. In the third construct, the reverse primer was
5'-ATAGAGCTCCCCTATTAGAGTGGGGGTAAAC (ETP3TATA), incorporating
a SstI restriction site, yielding a product from
177 to
37, and placing the SstI site immediately before the TATA
box to allow use of the LTR TATA box with equivalent spacing following
replacement of the NheI-SstI fragment of p
BN. PCR conditions were 25 cycles of 30 s at 94°C, 1 min at 60°C, and 1 min at 72°C.
Retroviral vector construction with an internal ppET1
promoter.
Plasmid pMB
, lacking the 3' LTR enhancer, was derived
following double digestion and religation to delete the 267-bp sequence between the NheI and XbaI sites of the 3' LTR of
pMB. The latter is a derivative of pBabePuro (29) that was
obtained by replacing sequences between the BamHI site and
the SstI site in the 3' LTR (encompassing the puromycin
selection cassette and the majority of U3) with myeloproliferative
sarcoma virus U3 sequences from pMPSV (35).
ppET1
BglII-
BamHI promoter fragments were cloned
into the
BamHI site of pMB

, re-creating a single
BamHI site 3' of the promoter.
Vectors with an internal
expression cassette in either orientation
were constructed as follows.
For ppET1 promoter expression in
the same orientation relative to the
viral transcription unit,
a 3.5-kb
BamHI fragment, encoding
nucleus-localized

-galactosidase
(nlslacz), was removed from
pMFGnlslacz (
19) and inserted into
the
BamHI
site. For expression in the reverse orientation, a fragment
containing
polyadenylation sequences was first inserted. This
was obtained by
amplification of a 158-bp product surrounding
the poly(A) site of
pSV
2cat, using the primers
5'-ACAGGATCCGAATGCAATTGTTGTTGTTAACTTG
and
5'-CCTAGATCTCCAGACATGATAAGATACATTG, which incorporate
BamHI
and
BglII restriction sites at the 5' and
3' ends, respectively.
PCR conditions were 30 cycles of 30 s at
94°C, 1 min at 52°C,
and 30 s at 72°C. The product was first
cloned into pSP72 for
sequence verification and then cloned into the
BamHI site downstream
of the ppET1 promoter in the
"reverse" orientation in pMB

, re-creating
a single
BamHI site between the promoter and poly(A) sequences.
The
nlslacz fragment was subsequently
inserted.
Recombinant retroviral vectors.
The packaging cell line
FLY-A13 (9) was used to generate recombinant retroviral
vectors following CaPO4-mediated transfection of plasmid
DNA. For vectors constructed in the pMB
backbone, the plasmid
pSV2neo was cotransfected at a molar ratio of 0.1. Stable
transfectants were selected in 1.2 mg of G418 per ml. Virus was
harvested following overnight incubation of confluent monolayers in
fresh medium and filtered (0.45-µm-pore-size filter). Target cells
were infected with serial dilutions of virus in the presence of 8 µg
of Polybrene per ml for 4 to 6 h. The culture medium was changed
and the cells were histochemically stained 2 to 3 days later with
5-bromo-4-chloro-3-indolyl-
-D-galactopyranoside (X-Gal). ELH5.10, a high-titer clone of the ppET1/LTR hybrid 5 construct, was
obtained from TE-FLY-A8 packaging cells (a TE671-based equivalent of
FLY-A13): following transfection and selection in 1 mg of G418 per ml,
the clone with the highest titer on PAE cells was chosen. TELCeB6AF
(9), a TE671-based MFGnlslacz virus producer clone, was used
as a control. Since medium conditioned by virus producer cells can
contain factors (such as chondroitin sulfate) that are inhibitory for
retroviral infection (26), care was taken to ensure that
titers were determined from the virus concentrations at which the
infection efficiency titrated linearly.
Analysis of proviruses in transduced cells.
For confirmation
of transduction, cells were lysed 5 days after infection in 50 mM
Tris-HCl (pH 8.5)-1 mM EDTA-0.5% Tween 20-200 µg of proteinase K
per ml. Lysates were subjected to PCR with primers
5'-GCACATGGCTGAATATCGACGG (beginning 78 bp 5' of the
EcoRI site within lacZ) and
5'-GCTTCAGCTGGTGATATTGTTGAG (spanning the PvuII
site in the retrovirus backbone 3' of the inserted lacZ gene). PCR conditions were 35 cycles of 30 s at 94°C, 1 min at 60°C, and 1 min at 72°C. Primers specific for human
glyceraldehyde-3-phosphate dehydrogenase (GAPDH) or porcine cytochrome
oxidase (34) were used as controls for DNA quantification.
Amplification with primer 5'-GGCAAGCTAGCTTAAGTAACGCC,
matching the LTR downstream of the NheI site, or
ETP5Nhe, matching the 5' end of the ppET1 promoter, with the reverse
primer 5'-GTTCCGAACTCGTCAGTTCCACC, matching part of the
packaging sequence downstream of the 5' LTR, was used to verify
duplication of the enhancer deletion or hybrid construction for ETP-I
and ETP/LTR hybrid 5, respectively.
Reverse transcription-PCR (RT-PCR) to determine endogenous
expression of ppET-1.
Total RNA was extracted from cells at
subconfluence by using the RNeasy kit (Qiagen) and digested with DNase
I (5 U/30 µg of RNA; Promega). Following phenol-chloroform extraction
and ethanol precipitation, 1 µg of RNA was reverse transcribed with
oligo(dT) primer and 20 U of MLV reverse transcriptase for 1.5 h
at 42°C. The resultant cDNA was heat denatured, and 5 µl (from an
initial 30 µl reaction) was used for PCR. To determine endogenous
expression from the endothelial cell-specific promoter, the forward and
reverse primers were 5'-TACTTCTGCCACCTGGACATC and
5'-TGCTTGGCAAAAATTCCAGC, respectively (amplifying between
positions +447 to +630). PCR conditions were 40 cycles of 1 min at
96°C, 1 min at 52°C, and 1 min at 72°C. To determine expression
from a second upstream promoter, functional in some nonendothelial
cells (4), the forward primer was
5'-TGTTTACCCCCACTCTAATA and the annealing temperature was
55°C (amplifying between positions
60 and +630). As a control, GAPDH sequences were amplified with primers
5'-TGGATATTGTTGCGATCAATGCC and
5'-GATGGCATGGACTGTGGTCATG, using a program of 1 min at
96°C, 30 s at 65°C, and 1 min at 68°C.
Determination of
-galactosidase expression.
-Galactosidase activity in cell lysates was determined by a
quantitative photometric assay (17). Cells in 24-well plates were infected with 50 µl of virus (ELH5.10 or the control virus without LTR modification) for 4 h, as above. At 3 days later, the
cells were washed in phosphate-buffered saline and lysed in 350 µl of
250 mM Tris-HCl (pH 8.0)-0.1% Triton X-100. Lysates were stored at
80°C. To determine the amounts of
-galactosidase, 50-µl
volumes of lysates and dilutions were combined with 50 µl of
phosphate-buffered saline-0.5% bovine serum albumin and 150 µl of
60 mM Na2HPO4 (pH 8.0)-1 mM
MgSO4-10 mM KCl-50 mM
-mercaptoethanol-0.1% CPRG
(chlorophenol red galactopyranoside; Boehringer). After light-protected incubation at room temperature, absorption at 570 nm was measured and
converted to picograms of
-galactosidase by using a standard curve
obtained with purified enzyme (Sigma).
To estimate the (average) expression per cell transduced with ELH5.10,

-galactosidase activity was normalized as follows.
For the control
virus, the number of cells responsible for the
observed enzyme activity
was determined by histochemical staining
from parallel experiments with
all parameters, such as cell number
and duration of exposure, kept
constant. The number of cells transduced
is dependent on the intrinsic
infectability of the different target
cells. The number of cells
transduced with ELH5.10 could not be
determined directly in this way
due to the variable transcriptional
activity of the hybrid promoter. It
is, however, equivalent to
the number transduced by the control virus
multiplied by a factor
that reflects the relative amounts of the two
viruses, irrespective
of their transcriptional activities. This factor
is independent
of the target cell but varies for different virus
harvests, and
it was determined from the relative LacZ titers of the
two viruses
for PAE cells. (An additional factor was applied for HMEC-1
cells
to compensate for inhibition with undiluted virus, based on the
observed nonlinearity of infection efficiency in this cell line.)
This
analysis assumes only that histochemical staining for the
control virus
on all cells, and for ELH5.10 on PAE cells, equates
with transduction
efficiency. Deviation from such a correlation
for ELH5.10 would result
in overestimation of the absolute values
but would not undermine the
relative values (see Results). Analysis
of the data in this way is a
consequence of the absence of selection
in our vector
design.
Confirmation of the transcription start site.
The start site
for transcription from the wild-type and hybrid LTRs was determined by
using RNA from PAE cells infected with ELH5.10 or control viruses.
Total RNA was made with the RNeasy kit (Qiagen). A 2-µg sample of RNA
was reverse transcribed with a primer specific for MLV bases 492 to
471, and the 5' cDNA end was amplified with a 5'/3' rapid amplification
of cDNA ends (RACE) kit (Boehringer Mannheim). Two rounds of PCR were
performed with the supplied anchor primer and primers specific for MLV
bases 469 to 448 (first round) and 342 to 320 (second round).
First-round PCR conditions were 40 cycles of 30 s at 94°C, 1 min
at 60°C, and 1 min at 72°C; the second round of PCR used an
annealing temperature of 65°C. The PCR product was purified and
sequenced with the MLV-specific primer.
 |
RESULTS |
Cloning of ppET1 promoter sequences.
Two previous studies of
sequences required for ppET1 promoter function in endothelial cells,
using transient-transfection assays, reported specificity associated
with sequences from positions
143 to +165 (27) and from
141 to +145 (43). A similar region (
177 to +158), as
well as one with less downstream sequence (
177 to +33), was amplified
by PCR from human genomic DNA (Fig. 1). Both promoter regions were used to generate retroviral vectors from
pMB
(see below), with expression in the forward orientation (i.e.,
5' to 3' with respect to the viral sequences). Viruses from bulk
populations of stable packaging-cell transfectants led to expression in
CPAE and PAE cells but not several other target cells, including TE671.
Since both promoter regions functioned equivalently, only the shorter
was used in the experiments discussed below. All constructs used
expression of nucleus-localized
-galactosidase (nlslacz) as a
reporter.

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FIG. 1.
Schematic representation of DNA sequences around the
transcription start site of the human ppET1 gene. Nucleotides are
numbered with reference to the transcription start site at +1.
Transcribed sequences are boxed: the untranslated 5' leader (hatched
box), the start of the coding sequence (solid) of exon 1, and the start
of intron 1. The translation initiation codon is at +269. Deletion
analysis of promoter activity showed that sequences between 141 and
+145 gave endothelial cell specificity in transfected cell lines.
Promoter function requires the presence of binding sites for GATA-2 and
for AP-1. Both CAAT and TATA boxes are present. The positions of
oligonucleotide primers for PCR are indicated below the diagram; these
were designed with linker restriction sites, as indicated (refer to the
text). Primer pair ETP5-ETP3A or ETP5-ETP3B generated promoter
fragments 177 to +33 and 177 to +158, respectively. Primer ETP5 was
used with ETP3A or ETP3TATA to generate ETP/LTR hybrids.
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Retroviral vector design for use of hybrid ppET1/LTR
promoters.
A series of vectors was made to examine the potential
for incorporating ppET1 promoter sequences within the viral LTR.
Modifications were made in the 3' LTR so that they would be duplicated
in the 5' LTR of the provirus for expression of the reporter gene. The tyrosinase enhancer and promoter have previously been successfully inserted in the viral LTR, replacing the viral enhancer
(42). We similarly inserted the ppET1 promoter between the
NheI and XbaI sites flanking the viral enhancer
(ETP/LTR hybrid 1; Fig. 2). However, we
reasoned that this construct was potentially suboptimal in three
respects. First, residual expression from the viral promoter due to
incomplete removal of transcription regulatory sequences could
compromise specificity. Second, when the transcriptional start site
associated with the inserted promoter is placed a significant distance
upstream of the viral polyadenylation sequences in the R region of the
5' LTR, premature termination of transcription could result; this is
usually silent due to the proximity of the viral start site and 5'
polyadenylation site and/or lack of upstream RNA sequences at the 5'
end of the viral transcript. Third, translation of a transcript with
such a long leader may be inefficient.

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FIG. 2.
Vectors with hybrid ppET1/LTR promoters. The proviral
forms, after transduction, of the vectors ppET1/LTR hybrids 1, 3, and 5 are illustrated, along with the control vector MFGnlslacz (derived from
pNeoMFGnlslacz). In the three hybrids, variable amounts of the viral
enhancer and promoter within U3 are replaced with ppET1 promoter
sequence (solid). Cross-hatched boxes indicate enhancer and R regions
of the viral LTR. The NheI, XbaI, and
SstI restriction sites used during construction are
indicated. Modifications were initially engineered in the 3' LTR and
duplicated at the 5' LTR during RT. Also indicated are the starts of
the expected transcripts, including potential transcripts from the
residual viral promoter in hybrids 1 and 3. Average vector titers from
four independent experiments, obtained following infection of PAE, 3T3,
and TE671 cells and histochemical staining for -galactosidase, are
given as CFU per milliliter. The limit of detection in this assay was
200 CFU/ml for 3T3 and TE671 cells and 20 CFU/ml for PAE cells.
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Two further ppET1/LTR hybrids were constructed. The majority of the
viral promoter was removed by insertion between the
NheI
and
SstI sites (ETP/LTR hybrid 3; Fig.
2). Also, the viral
sequence
upstream of the TATA box was replaced with ppET1 promoter
sequence
upstream of its TATA box (nucleotides

177 to

37), yielding
a
hybrid promoter in which the spacing between the ppET1 CAAT box
and
virus-derived TATA box was the same as in the ppET1 promoter
(ETP/LTR
hybrid 5; Fig.
2). This construct was expected to utilize
the viral
start site and so generate a spliced transcriptional
leader identical
to that generated by the intact LTR in the control
vector. Sequences 3'
of the viral TATA box were not replaced since
the terminal bases of U3
are necessary for recognition of the
polyadenylation signal in the 3'
LTR, possibly due to their involvement
in RNA secondary structure
(
5,
13).
The three hybrid LTRs were used to replace the 3' LTR of the plasmid
pNeoMFGnlslacz, which possesses a Neo
r selection cassette
outside of the retroviral sequences. Virus
derived from stable
transfectants was used to infect target cells,
in which marker gene
expression was subsequently detected by histochemical
staining. Bulk
populations of transfected FLY-A13 cells were used
to compare vector
constructs without the potential complication
of clone variability. The
target cells used were 3T3, TE671, and
PAE. Transfection experiments
previously showed that the promoter
is nonfunctional in 3T3 cells
(
27,
43). TE671 cells lack endogenous
expression of ppET1
mRNA, by RT-PCR (see below), and were used
as an additional negative
control. Primers specific for porcine
ppET1 confirmed expression in PAE
cells (data not shown), which
were used as a positive control.
Consistent with our design rationale,
the highest
lacZ titer
was shown by ETP/LTR hybrid 5; it was 6%
of that of the unmodified LTR
control vector on PAE cells but
only 0.2% or less on 3T3 and TE671
cells (Fig.
2), suggesting
specificity for PAE cells. Thus, replacement
of the viral enhancer
with the ppET1 promoter abolished LTR function in
these negative
control cell
lines.
Retroviral vector design for use of the internal ppET1
promoter.
For comparison, vectors with an internal promoter in a
vector with the 3' LTR enhancer deleted were constructed in both
forward (ETP-I) and reverse (ETPrev) orientations (Fig.
3). Both vectors gave lacZ
titers for PAE cells, while the presence of an internal ppET1 promoter
abolished residual LTR activity in 3T3 and TE671 cells. This is most
probably because the ppET1 promoter, which is nonfunctional in these
cells, overrides the disabled enhancerless LTR.

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FIG. 3.
Vectors incorporating an internal ppET1 promoter. The
proviral forms of the vectors ETP-I and ETPrev are illustrated, along
with control vector MB . All have LTR enhancer deletions, initially
engineered in the 3' LTR and duplicated at the 5' LTR during RT. The
ppET1 promoter is represented by the solid box. ETPrev additionally has
an internal poly(A) site. Also indicated are the expected transcripts.
Average vector titers from three independent experiments are given as
CFU per milliliter. See also the legend to Fig. 2.
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PCR analysis of transduced target cells.
Transduced target
cells were lysed and used for PCR amplification of a specific
lacZ/vector junction fragment to confirm transduction of
both PAE and TE671 target cells (Fig.
4A), consistent with the cell type
differences in functional titer (lacZ CFU per milliliter) being due to transcriptional specificity. Estimates based on a twofold
serial dilution of the control vector indicated that the transduction
efficiency for each of the modified vectors was reduced up to 10-fold
on both PAE cells (Fig. 4B) and TE671 cells (data not shown). The
reduced lacZ titer on PAE cells appears to be due in large
part to reduced virus production, as a consequence of the LTR
modification, although there may be an additional component due to
reduced promoter function (e.g., hybrid 3).

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FIG. 4.
PCR analysis of transduced target PAE and TE671 cells.
Cell lysates were used to amplify a ~500-bp lacZ/vector
junction region to detect the presence of integrated proviruses (LacZ).
The product is slightly larger for ETP-I due to differences at the
cloning site. The lower panels show controls for DNA quantification in
the PCR, i.e., human GAPDH or porcine cytochrome oxidase, as
appropriate. (A) PAE and TE671 cells were infected with MFGnlslacz
control (lane C) or ETP/LTR hybrid 1, 3, and 5 viruses. Lane contains uninfected controls. (B) PAE cells were infected with
MFGnlslacz, ETP-I, and ETP/LTR hybrid viruses, diluted as shown. As is
evident from the dilution series for MFGnlslacz, transduction is
initially nonlinear, and so quantitation should be estimated from the
1:10-diluted viruses.
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PCR of transduced cells was also used to analyze the nature of the
provirus 5' LTR and confirm duplication of the 3' LTR deletions
and
modifications. Primers specific for sequences upstream or
downstream of
the
NheI site or for the ppET1 promoter were used
with
primers specific for U5 or part of the packaging signal sequence
downstream of the proviral 5' LTR to verify duplication of the
enhancer
deletion for the vector ETP-I and of the hybrid construction
for
ETP/LTR hybrid 5 (data not
shown).
Endothelial cell specificity of expression from ETP/LTR hybrid
5.
From the foregoing experiments, vector ETP/LTR hybrid 5 was
chosen for further analysis. The producer cell clone with the highest
lacZ titer on PAE cells was named ELH5.10 (for "ETP/LTR hybrid 5, clone 10"). Virus titers and
-galactosidase enzyme activities of transduced cells were measured for a panel of six human
target cells. RT-PCR was used to determine the status of endogenous
ppET-1 promoter function in these cells in order to assess how well
this specificity was reproduced by the vector (Fig.
5). Specificity for ppET-1 and not ppET-2
or ppET-3 was also provided by the primers used. Moreover, recent
studies have shown that a second, upstream promoter can lead to
expression of ppET-1 sequences in nonendothelial cells (4).
A second primer pair was used to assess expression from the upstream
promoter to avoid misinterpreting the RT-PCR results. The endothelial
cell-specific promoter was active in the cell line HMEC-1 and the
primary breast microvascular endothelial cells but not in ECV304,
HT1080, and TE671 cells.

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|
FIG. 5.
Endogenous expression from the ppET-1 promoter. RNA from
human target cells, including primary endothelial cells (Primary EC),
was isolated and used to amplify regions of the ppET-1 cDNA (+447 to
+630), the cDNA derived from the upstream promoter ( 60 to +630, based
on the same numbering system relative to the endothelial cell-specific
transcript [Fig. 1]), or the GAPDH cDNA as a control. Detection of
60 to +630 is more sensitive than of +447 to +630 (compare HT1080
products). Consequently, while it is evident that the ppET-1 promoter
is active in HMEC-1 and primary endothelial cells, the +447 to +630
product for EAhy926 cannot be interpreted as such due to the activity
of the upstream promoter in these cells.
|
|
Three independent virus harvests were subjected to titer determination
on PAE, 3T3, and all six human target cells. The relative
lacZ titer of ELH5.10 versus MFGnlslacz control virus was of
the
order of 1% for PAE, HMEC-1, and the primary endothelial cells
and
approximately 10-fold less for TE671 and all other target
cells (Fig.
6A). Although the target cell
infectabilities vary
widely, the relative titers are directly
comparable and indicate
specificity consistent with the pattern of
endogenous ppET-1 promoter
activity. (The titer reduction on PAE cells
is greater than that
shown in Fig.
2 due to the nature of the
particular clones used,
as opposed to the bulk populations of producer
cells used previously.)

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|
FIG. 6.
Endothelial cell specificity of expression from ETP/LTR
hybrid 5. PAE, 3T3, and a panel of six human cell lines, including
primary endothelial cells (Primary EC), were infected with virus
ELH5.10 for titer determination by histochemical staining or for
determination of -galactosidase enzyme activities. The MFGnlslacz
control virus was used in parallel. Three independent virus harvests of
ELH5.10 were used. For each target cell, the titer of ELH5.10 relative
to the control (A) or the -galactosidase activity normalized to
account for the variation in intrinsic infectability of the different
target cells (B) is shown. (A) The relative titres are expressed as a
percentage of that displayed on PAE cells in order to normalize
variations in the absolute titers of the different harvests. Data shown
are the mean and standard error of nine determinations. (B) Levels of
expression per transduced cell for each cell target following infection
with ELH5.10 (but see the text for a discussion of absolute values).
Data shown are the mean and standard error of six (HT1080, EAhy926, and
HMEC-1 cells) or nine (PAE, TE671, and 3T3 cells) determinations. The
mean activity of the control virus in PAE cells was 0.8 pg/cell.
Control virus titers were of the order of 107 CFU/ml for
TE671 and 3T3 cells, 106 CFU/ml for HT1080, EAhy926, and
PAE cells, 105 CFU/ml for ECV304 and HMEC-1 cells, and
104 CFU/ml for primary endothelial cells.
|
|
The same virus harvests were used for determination of

-galactosidase enzyme activities following transduction with either
ELH5.10 or 1:100-diluted control virus. The poorly infectable
primary
endothelial cells and the ECV304 cell line did not give
significant
activity above background and so were not considered
further for this
analysis.

-Galactosidase expression for ELH5.10
was normalized in
order to assess the relative expression per
transduced cell (Fig.
6B).
Normalization relies on the assumption
that all PAE cells transduced
with ELH5.10 stain positive in the
histochemical assay. Although
underestimation will lead to overestimation
of the absolute values of
enzyme expression, the relative magnitudes
are reliable. Expression was
approximately 10-fold greater in
both PAE and HMEC-1 cells than in 3T3
and TE671 cells, consistent
with the specificity indicated by the
relative
lacZ titers (Fig.
6A).
Southern blot analysis of TE671 cells infected with ELH5.10 virus
indicated that the provirus was intact, confirming that
reduced
expression in these cells was not due to rearrangement
(Fig.
7). The provirus was reduced in size
relative to the unmodified
vector due to replacement of the 5' LTR with
the (shorter) hybrid
LTR. Finally, the performance of the hybrid LTR
vector, designed
to initiate transcription as for the unmodified LTR,
was verified
by using 5'-RACE to examine the transcripts. RNA was
prepared
from PAE cells infected with ELH5.10 and control viruses and
also
from the cells producing these viruses. The amplified RACE PCR
products were sequenced, confirming that use of the +1 site was
maintained for the initiation of transcription in both producer
and
transduced target cells (data not shown).

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|
FIG. 7.
Detection of intact provirus. DNA from TE671 cells
infected with two preparations of ELH5.10 (lanes 1 and 2) was digested
with NheI. Southern blot analysis detected the 5.3-kb
fragment expected for the intact provirus. The fragment is slightly
smaller than that for the unmodified vector (lane 3) due to the nature
of the LTR modification.
|
|
 |
DISCUSSION |
In considering retroviral vector designs for tissue-specific
expression of therapeutic genes, we elected to avoid the presence of a
functional LTR in the integrated provirus of the target cell, since
this can lead to transcriptional interference. Similarly, optimal
vectors will also avoid the use of an additional promoter for
selectable-marker expression. Moreover, since selection is not
applicable to a therapeutic protocol for in vivo gene therapy, we
decided to omit any such gene. Although lack of a means of selection
has attendant difficulties in terms of in vitro manipulation and
evaluation, we reasoned that simplicity of design was likely to be
valuable in terms of efficacy. Also, without the potential for
selection to bias expression, the performance of such vectors in vivo
will be more accurately reflected in vitro. In this important respect
our study differs from previous studies in which regulatory sequences
were incorporated into retroviral vectors.
The approach taken was to incorporate ppET1 promoter sequences into the
LTR to generate hybrid promoters, as has been done previously with
tyrosinase regulatory regions (12, 42). However, the
construction most extensively studied in this work (hybrid 5) differs
from any previously described. Sequences preceding the ppET1 TATA box
were fused with the viral TATA box, eliminating all other viral
transcription regulatory sequences and maintaining the spacing between
CAAT and TATA boxes as in the ppET1 promoter. This resulted in
initiation of transcription at the viral start site at the beginning of
R identical to that obtained from the unmodified LTR. The MFG vector
design employs a splicing mechanism to optimize translation efficiency
(14), which is retained in the hybrid.
The hybrid promoter showed a 10-fold preferential expression in PAE and
HMEC-1 cells compared to nonendothelial cells. Relative to a control
vector used to correct for the widely varying infectabilities of the
target cells, functional titers determined by measurement of
-galactosidase expression were similarly 10-fold higher for endothelial cells, including human primary breast microvascular endothelial cells. Vector specificity correlated with the endogenous activity of the ppET-1 promoter. However, it is apparent that the
promoter activity of the hybrid was diminished compared to the
unmodified LTR (Fig. 6). Additionally, the LTR modification resulted in
some loss of vector titer.
We sought to incorporate sequences directing endothelial cell-specific
expression within recombinant retroviral vectors because of our
interest in developing a gene therapy approach to modify tumor
vasculature. In the present study, we used the characterized promoter
region of the human ppET1 gene (27, 43), which is small and
of simple organization. ppET1 is expressed in large-vessel and
microvascular endothelial cells (7). However, its expression is not entirely endothelial cell restricted: it is additionally expressed in renal and pulmonary epithelium, and, at least for the
latter, expression in vitro is controlled by the same promoter region
(38). Transgene expression controlled by the murine ppET1 promoter shows a similar pattern (23). More recently, a
number of promoters for human genes whose expression is specifically upregulated during angiogenesis have been described and may afford greater potential. In particular, expression of KDR/flk-1,
flt-1, and tie is induced on endothelial cells
within human and experimental tumors (30). Such regulatory
sequences may enable further improvements to give tightly restricted
expression of genes in the tumor vasculature.
 |
ACKNOWLEDGMENTS |
This work was supported by the Medical Research Council.
We are grateful to C. Clarke and M. O'Hare, University College London,
for the kind gift of primary breast microvascular endothelial cells; to
the Centers for Disease Control and Prevention, Atlanta, Ga., for the
HMEC-1 cell line; to F.-L. Cosset, University of Lyons, for the
TE-FLY-A8 amphotropic retroviral packaging cell line; and to G. Mavria
for Fig. 7. We thank M. K. L. Collins and Y. Takeuchi for
critical discussion.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Chester Beatty
Laboratories, Institute of Cancer Research, 237 Fulham Rd., London SW3 6JB, United Kingdom. Phone: 171-352 8133. Fax: 171-352 3299. E-mail: c.porter{at}icr.ac.uk.
 |
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Journal of Virology, December 1999, p. 9702-9709, Vol. 73, No. 12
0022-538X/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
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