The 89.6, KB9, and chimeric envelope glycoproteins were tested for the
ability to support infection of CEMx174 cells and for sensitivity to
neutralization by IgG1b12, using the env complementation assay (22). All of the envelope glycoproteins efficiently
supported virus entry into CEMx174 cells in the absence of antibody
(data not shown). The sensitivity of viruses with the chimeric envelope glycoproteins to IgG1b12 neutralization is shown in Fig.
2. The results with the KB9(
V1/V2),
KB9(
185), and KB9(
187) envelope glycoproteins indicate that the KB9
V1/V2 variable loops, in particular residues 185 and 187, are necessary
for a high level of resistance to IgG1b12. The level of KB9
neutralization resistance was also influenced by the V3 loop change at
residue 305. Although an intermediate level of neutralization
resistance could be conferred on the 89.6 envelope glycoproteins by the
V2 loop changes at residues 185 and 187, the 89.6(+185/187/305)
envelope glycoprotein with an additional V3 loop change specified a
level of neutralization resistance equivalent to that seen for the KB9
envelope glycoproteins. Thus, the passage-associated changes in the V2
loop are necessary but not sufficient for the full level of IgG1b12
resistance achieved by the KB9 envelope glycoproteins. The V3 loop
change at residue 305 is not sufficient on its own for IgG1b12
resistance but contributes to the degree of neutralization resistance.
The passage-associated changes in the gp120 V1, C2, and V4 regions and
in the gp41 ectodomain were not necessary for the resistance of the KB9
envelope glycoproteins to neutralization by the IgG1b12 antibody.
The observed resistance of the KB9 envelope glycoproteins to
neutralization by IgG1b12 could be due to passage-associated sequence
changes that result in a loss or reduction of antibody binding. Indeed,
V2 loop changes have previously been shown to affect the ability of
IgG1b12 to bind the monomeric gp120 glycoprotein (48). To
address this possibility, we examined the binding of IgG1b12 to 89.6 and KB9 soluble gp120 monomers and oligomeric envelope glycoprotein
complexes expressed on the surface of transfected 293T cells. Figure
3A shows that the IgG1b12 antibody bound
soluble 89.6 and KB9 gp120 monomers comparably. Differences in the
efficiency of IgG1b12 binding to the 89.6 and KB9 envelope
glycoproteins were more apparent when antibody binding to envelope
glycoprotein complexes on the cell surface were examined (Fig. 3B).
These results indicate that the IgG1b12 epitope is preserved on the KB9
envelope glycoproteins but may be less available for antibody binding
in the context of the oligomeric envelope glycoprotein complex.
The envelope glycoprotein determinants of SHIV-KB9 resistance to
neutralization by a V3 loop-directed antibody, AG1121, were investigated, using the panel of recombinant envelope glycoproteins. All of the viruses pseudotyped with envelope glycoproteins containing the passage-associated glutamate residue at position 305, including the
89.6(+305) mutant, exhibited resistance to neutralization by AG1121
(Fig. 4). The envelope glycoprotein
variants with the wild-type arginine at position 305 specified either
an intermediate level of neutralization or neutralization comparable to
that of the 89.6 glycoproteins. The envelope glycoproteins, KB9(
305) and KB9(
C2/V3/V4), which specified intermediate neutralization phenotypes, contained the KB9 V1/V2 variable loops. Thus, the KB9-associated residue at position 305 within the V3 loop is sufficient to confer complete resistance to neutralization by the AG1121 antibody.
In the absence of this change, the presence of the KB9 V1/V2 loops can
specify an intermediate level of neutralization resistance. Only when
both V1/V2 and V3 sequences of the KB9 envelope glycoprotein were
reverted to the 89.6 sequences in the KB9(
V1/V2-305) mutant was a
fully neutralization-sensitive phenotype observed.
The binding of the AG1121 anti-V3 loop antibody to the 89.6 and KB9
envelope glycoproteins was examined. Figure
5A shows that the AG1121 antibody
recognized both monomeric gp120 envelope glycoproteins, indicating that
the epitope was intact on both envelope glycoproteins. The affinity of
the AG1121 antibody for the 89.6 gp120 monomer was approximately
2.7-fold that for the KB9 gp120 glycoprotein. The AG1121 antibody also
bound the KB9 envelope glycoprotein complex on the cell surface less
efficiently than the 89.6 envelope glycoproteins (Fig. 5B).
In this study, we used a panel of neutralizing antibodies to
characterize the antigenic differences between two primary HIV-1 envelope glycoproteins that differ by only 12 amino acids in the exterior domains. These 12 changes arose during in vivo passage of
SHIV-89.6 and, in part, may have resulted from selective pressure exerted by the host immune response. A previous study indicated that
for the first few months after infection with SHIV-89.6 or SHIV-KB9,
the neutralizing antibody responses are restricted to the infecting
virus and are directed against a very limited number of epitopes
(15). The determinants of these strain-specific epitopes
were localized to the V2 and/or V3 loops of the HIV-1 gp120 envelope
glycoprotein. Our observation that the KB9 envelope glycoproteins
conferred on viruses greater resistance to a V3 loop-directed
monoclonal antibody than did the 89.6 envelope glycoproteins is
consistent with the presence of selective V3-directed antibodies during
the in vivo evolution of SHIV-KB9. The increased resistance to a CD4BS
antibody conferred by the KB9 envelope glycoproteins raises the
possibility that antibodies directed against the CD4-binding region
also shaped the evolution of SHIV-KB9. More broadly neutralizing antibodies like CD4BS antibodies tend to arise later in the course of
HIV-1 infection in humans or SHIV infection in monkeys. However, it is
possible that lower-affinity members of this antibody group exerted
selective pressure in vivo without being detected in the neutralization
assay. Alternatively, resistance to the CD4BS antibody could have
arisen as a consequence of selective pressure exerted by V2- and
V3-directed antibodies. Whatever the nature of the humoral immune
response that drove the evolution of SHIV-KB9, it is noteworthy that
the protection against CD4BS antibodies is precise and does not extend
to CD4 itself, which binds equivalently to the 89.6 and KB9 envelope
glycoproteins (25).
The KB9 and 89.6 envelope glycoproteins were equally sensitive to
neutralization by the 2G12 and 2F5 antibodies, which appear to be
infrequently elicited in HIV-1-infected humans. Apparently, there is
little selective pressure in SHIV-infected monkeys to vary or protect
these two conserved epitopes. One explanation for this situation is
that SHIV-infected monkeys, like HIV-1-infected humans, rarely generate
neutralizing antibodies that resemble 2G12 or 2F5. The high degree of
glycosylation of the HIV-1 gp120 surface that contacts the 2G12
antibody has been suggested to contribute to the poor immunogenicity of
the epitope (58). The linear 2F5 epitope in gp41 has also
proven to be very poorly immunogenic, for reasons that remain unclear
(41).
The changes responsible for resistance to both the AG1121 V3-directed
antibody and the IgG1b12 CD4BS antibody mapped to the V2 and V3 loops
of the HIV-1 gp120 glycoprotein. This is consistent with previous
observations that the major gp120 variable loops not only contain
neutralization epitopes but can modulate the interaction of antibodies
with conserved gp120 epitopes related to the receptor binding regions
(53, 62). V3 loop changes in residue 305 were primarily
responsible for the resistance of SHIV-KB9 to neutralization by the
AG1121 antibody. Although the AG1121 antibody can still bind the
monomeric KB9 gp120 envelope glycoprotein, it does so with affinity
lower than that seen for the AG1121 interaction with the 89.6 gp120
glycoprotein. Our data do not allow us to distinguish whether the
residue 305 phenotypes are mediated by partial perturbation of the
AG1121 epitope or by secondary effects on V3 conformation and exposure
of the epitope. The V2 loop changes in residues 185 and 187, which
allowed partial resistance to AG1121 neutralization, probably operate
by masking the V3 epitope. The proximity of the HIV-1 gp120 V2 and V3
loops has been suggested by the generation of neutralizing antibodies in SHIV-infected monkeys that apparently recognize structures dependent
on both V2 and V3 sequences (15). Although the V2 and V3
variable loops were deleted from the gp120 core that has been
structurally characterized by X-ray crystallography (31, 62), proximity of these loops is consistent with this structure. Finally, the V2 loop has been shown to mask CD4i epitopes
(63), which are thought to reside immediately adjacent to
the V3 loop.
Resistance to neutralization by the CD4BS antibody IgG1b12
was conferred primarily by passage-associated changes in the V2 loop, with the residue at position 185 playing a dominant role. The KB9
gp120 monomer is still efficiently recognized by the IgG1b12 antibody,
suggesting that the epitope is intact in the neutralization-resistant virus. Previous studies have suggested a proximity of the V2 loop and
the IgG1b12 epitope (48), a possibility consistent with the
relationship of the V2 loop and the CD4BS proposed on the basis of
antibody competition and X-ray crystallographic analyses (31,
62). Mo and colleagues showed that after in vitro passage in the
presence of IgG1b12, a single amino acid substitution at position 185 was sufficient to create a virus resistant to IgG1b12 neutralization
(38). In contrast to most CD4BS antibodies, IgG1b12 recognizes a V1/V2 loop-deleted gp120 glycoprotein less efficiently than the wild-type glycoprotein (48). Thus, residues in the V2 loop can play a major role in the maintenance or exposure of the
IgG1b12 epitope.
V3 loop changes augmented the degree of IgG1b12 resistance specified by
the V2 loop changes. It is noteworthy that in vivo passage resulted in
reciprocal charge substitutions in the two residues at positions 185 and 305 implicated in the resistance phenotype. This observation, the
shift in the glycosylation site at the adjacent position 187 in the KB9
V2 loop (24), and the identification of apparently
discontinuous neutralization epitopes spanning V2 and V3
(15) have led to the model that the V2 and V3 variable loops
are more proximal in the KB9 than in the 89.6 envelope glycoproteins.
Such proximity would explain the cooperativity in resistance to IgG1b12
neutralization observed in our study.
These studies illustrate examples of the in vivo evolution of primary
HIV-1 envelope glycoproteins in response to selective forces that
include neutralizing antibodies. Further analysis may provide insights
into the structural relationships of variable and conserved
neutralization epitopes on the HIV-1 envelope glycoproteins and might
suggest avenues for intervention.
We thank Dennis Burton, Alexandra Trkola, and Herman Katinger for
reagents and Yvette McLaughlin and Sheri Farnum for manuscript preparation.
This work was supported by National Institutes of Health grants AI33832
and AI31783. Dana-Farber Cancer Institute is the recipient of a Center
for AIDS Research award from the National Institutes of Health. This
work was also supported by the Mathers Charitable Foundation, the
Friends 10, Douglas and Judy Krupp, and the late William F. McCarty-Cooper.
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