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Journal of Virology, January 1999, p. 819-825, Vol. 73, No. 1
0022-538X/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Molecular Characterization of a Bovine Enteric
Calicivirus: Relationship to the Norwalk-Like Viruses
B. L.
Liu,1
P. R.
Lambden,1
H.
Günther,2
P.
Otto,2
M.
Elschner,2 and
I.
N.
Clarke1,*
Molecular Microbiology Group, University
Medical School, Southampton General Hospital, Southampton SO16 6YD,
United Kingdom,1 and
Federal Institute
for Health Protection of Consumers and Veterinary Medicine, Jena
Branch, 07743 Jena, Germany2
Received 15 July 1998/Accepted 30 September 1998
 |
ABSTRACT |
Jena virus (JV) is a noncultivatable bovine enteric calicivirus
associated with diarrhea in calves and was first described in Jena,
Germany. The virus was serially passaged 11 times in colostrum-deprived
newborn calves and caused diarrheal disease symptoms at each passage.
The complete JV genome sequence was determined by using cDNA made from
partially purified virus obtained from a single stool sample. JV has a
positive-sense single-stranded RNA genome which is 7,338 nucleotides in
length, excluding the poly(A) tail. JV genome organization is similar
to that of the human Norwalk-like viruses (NLVs), with three separate
open reading frames (ORFs) and a 24-nucleotide sequence motif located
at the 5' terminus of the genome and at the start of ORF 2. The
polyprotein (ORF 1) consists of 1,680 amino acids and has the
characteristic 2C helicase, 3C protease, and 3D RNA polymerase motifs
also found in the NLVs. However, comparison of the N-terminal 100 amino
acids of the JV polyprotein with those of the group 1 and group 2 NLVs showed a considerable divergence in sequence. The capsid protein (ORF 2) at 519 amino acids is smaller than that of all other
caliciviruses. JV ORF 2 was translated in vitro to produce a 55-kDa
protein that reacted with postinfection serum but not preinfection
serum. Phylogenetic studies based on partial RNA polymerase sequences
indicate that within the Caliciviridae JV is most closely
related to the group 1 NLVs.
 |
TEXT |
Caliciviruses cause a wide spectrum
of diseases and are a major cause of gastroenteritis in humans (7,
11, 29, 30). However, little is known about enteric caliciviruses
from other species (4). The prototype strain of human
caliciviruses is Norwalk virus, which was first described in 1972 associated with an outbreak of gastroenteritis and vomiting involving
children and staff at an elementary school in Norwalk, Ohio
(31). Norwalk virus and the subsequently described
Norwalk-like caliciviruses (NLVs) have also been collectively described
as small, round-structured viruses (6). NLVs are so called
because they can be clearly distinguished from other enteric
viruses on the basis of virion morphology. These viruses are
approximately 30 to 35 nm in diameter and have an amorphous structure
with a ragged edge. This morphology contrasts with that of the
Sapporo-like viruses (SLVs) which are also associated with human
gastroenteritis. The SLVs are predominantly associated with pediatric
gastroenteritis and display the distinctive morphology typical of other
well-defined animal caliciviruses (37).
Complete nucleotide sequences are available for the prototype Norwalk
virus (23, 28) and two NLVs, Southampton virus (33, 35) and Lordsdale virus (10). These viruses have
single-stranded (ss) positive-sense RNA genomes of 7,500 to 7,700 nucleotides organized into three major open reading frames (ORFs). ORF
1 encodes a large polyprotein (180 kDa) that undergoes proteolytic
cleavage by a 3C-like protease, ORF 2 encodes a single capsid protein
(60 kDa), and ORF 3 encodes a small, basic protein
(Mr, 20 to 25 kDa) of unknown function.
Comparisons of the three complete genomic sequences together with
phylogenetic analyses of many partial sequences have shown that the
NLVs can be divided in to two genetic groups (34). NLVs do
not grow in cell culture, and therefore molecular studies have relied
on the availability of stool samples from volunteers or clinical
specimens. Phylogenetic analyses also suggest that the NLVs are quite
distinct from the SLVs and constitute a separate genus of the family
Caliciviridae (3, 43).
Enteric caliciviruses have been described for a number of animal
species, including cattle, pigs, cats, dogs, and chickens (2, 4,
16, 26, 27, 39, 40, 47, 48, 50, 51). However, these viruses
remain candidate caliciviruses because of the absence of definitive
sequence evidence linking them to the Caliciviridae
(8). Progress in the molecular characterization of these
viruses has been severely hampered by the lack of routine in vitro
procedures for their isolation. Only a porcine enteric calicivirus
isolate from the United States has been shown to replicate in cell
culture (14, 44). Early studies with the NLVs indicated that
the likely target cells for virus replication for the human enteric
viruses are enterocytes of the small intestine (1, 52, 53).
Bovine enteric caliciviruses, like the NLVs also replicate in
enterocytes of the small intestine (22). This similarity in
tissue tropism between viruses from different host species together with the recent observation that porcine enteric caliciviruses from Japan are related to group 2 NLVs (55) led us to
investigate whether the bovine enteric viruses might also be related to
the NLVs. The bovine enteric caliciviruses would certainly be useful as
a model system for investigating the pathogenesis of enteric calicivirus infection because fresh, healthy bovine small intestine tissue is readily available, whereas surgically removed fresh, undiseased human small intestine tissue is exceedingly difficult to
obtain. Thus, the primary purpose of this work was to characterize the
complete genome of a bovine enteric calicivirus originally isolated in
Jena, Germany, in 1980 (20).
A calicivirus has been isolated from cattle (41), but this
virus (Tillamook virus; BCV-Bos1) causes respiratory
symptoms. Phylogenetic analysis showed that the Tillamook virus is very closely related to the San Miguel sea lion virus and vesicular exanthema of swine virus and can also infect pigs, causing vesicular lesions. However, in contrast, Jena virus (JV) (117/80) was discovered by electron microscopic (EM) examination of diarrheic stools from newborn calves (20, 21).
Molecular analysis of JV.
EM examination of JV showed a
typical NLV morphology, with virions of approximately 30 nm in
diameter (21). The virus was passaged 11 times in
colostrum-deprived, newborn calves, which were transported to the
laboratory soon after birth. Each calf received a 5- to 10-ml oral
inoculum of fecal supernatant from the previous calf. Inocula were
prepared by centrifugation of fecal samples at 3,000 × g for 30 min followed by dilution with 4 volumes of
phosphate-buffered saline (PBS). Two hours after receiving the
inoculum, calves were given 2 liters of colostrum and then fed milk at
500 ml/10 kg of body weight twice daily. On each passage, the calves
became symptomatic with diarrheal disease and the presence of JV was
verified by EM.
For molecular studies, the virus was purified from the first diarrheal
sample collected at 12.5 h postinfection from newborn calf 319/92
(10th passage). This sample was diluted with 4 volumes of PBS and
centrifuged at 3,000 × g for 30 min. The supernatant was mixed with 2 volumes of 1,1,2-trichlorotrifluoroethane, and the
organic and aqueous phases were separated by centrifugation at
3,000 × g for 30 min. The supernatant was extracted
with chloroform, and then a sample of the aqueous phase was purified by
sedimenting it through a 35% sucrose cushion at 35,000 rpm for 2 h in a Sorvall TH641 rotor. This sample was dialyzed against PBS and
used for cDNA synthesis. JV (100 µl) purified through a sucrose
cushion was extracted with Trizol (Gibco-BRL, Paisley, United Kingdom), and the genomic RNA was adsorbed to silica particles (RNAid;
Bio 101 Inc., La Jolla, Calif.). ss cDNA was synthesized from
this RNA by using RNase H
Moloney murine leukemia
virus reverse transcriptase (Superscript; Gibco-BRL) by
priming with the 3' terminally degenerate oligo(dT) primer
5' T25VN 3' (T25-A/G/C-A/G/C/T) in a
standard cDNA synthesis reaction as described by the manufacturer.
RNA/DNA hybrids (in a final reaction volume of 50 µl) were treated
with 5 µl of 1 M NaOH at 65°C for 10 min and then
neutralized with 5 µl of 1 M HCl plus 5 µl of 1 M Tris-HCl (pH
7.5). This cDNA was used as a template for amplification of a small
fragment of the RNA-dependent RNA polymerase gene using
the primer pair GLPSG1
(5'-GAIGGICTICCATCWGGITTYCC-3') and YGDD1
(5'-ACIATYTCRTCATCICCRTARAA-3'). These primers were originally designed to amplify cDNA from human group 1 NLVs by using a
consensus sequence obtained by aligning the RNA polymerase genes
(18). Amplification was performed with a Tetrad Peltier thermal cycler (MJ Research, Watertown, Mass.) and consisted of 35 cycles of 94°C for 15 s, 50°C for 15 s, and 72°C for
15 s, using Bio-X-act polymerase (Bioline, London, United Kingdom)
in a reaction volume of 50 µl containing 25 mM TAPS
[Tris(hydroxymethyl)-methyl-amino-propanesulfonic acid and sodium
salt, pH 9.3 (at 25°C)], 50 mM KCl, 2 mM MgCl2, 1 mM
-mercaptoethanol, 200 µM each dATP, dGTP, dTTP, and dCTP. Following amplification, the PCR product (156 bp) was sequenced directly with primers GLPSG1 and YGDD1.
The sequence obtained was used to build the specific primer JV1
(5'-
4450ACTTCCCAAGTTAATTCTATT
4470-3') to
amplify a 2,914-bp amplicon with primer 5' T
25VN 3',
using
Bio-X-act polymerase for 35 cycles of 94°C for 15 s,
50°C for
15 s, and 72°C for 3 min. This amplicon was purified
from the
reaction mix by using a Wizard PCR Prep column (Promega,
Southampton,
United Kingdom) and then digested to completion with
the restriction
endonucleases
HaeIII or
RsaI
(Promega). The DNA fragments were
ligated into
SmaI-digested
pSP73 (Promega), and the recombinant
plasmids were transformed into
Escherichia coli DH5

. Analysis
of the inserts from these
recombinants allowed the rapid accumulation
of sequence data from which
a set of custom oligonucleotide primers
were synthesized and used to
amplify and directly sequence a series
of PCR
fragments.
Sequences upstream of the RNA polymerase region as far as the helicase
motif were obtained by reverse transcription-PCR, using
primers
JV2
(5'-
4470AATAGAATTAACTTGGGAAGT
4450-3')
and Helicase 3 (5'-
1465GGCCMCCCKGGIWKIGGIAAA
1685-3').
Primer Helicase 3 was designed from the amino acid sequence
motif
GXXGXGKT found in the helicase region of all caliciviruses.
PCR
conditions were the same as those used to amplify the 3'-terminal
3-kb
fragment with primer pair JV1 and 5' T
25VN 3'.
The 5' end of the JV genome was sequenced by the
random PCR method (
10) adapted from the procedures of
Froussard (
15)
and Grothues et al. (
19). Briefly,
ss cDNA was generated by
using specific primers and then
converted into double-stranded
(ds) cDNA using a random primer,
LinkerN
7 (5'-TAGTACATAGTGGATCCAGCTN
7-3'), and Klenow
polymerase.
The randomly primed viral ds cDNA was then amplified
in two
successive, nested PCRs using specific primers and a primer
based on the linker component of LinkerN
7. Reaction
products were
sequenced directly to enable the design of new
oligonucleotides
for repeated rounds of random primer extension toward
the 5' terminus.
This approach enabled sequence data to be collected to
within
80 nucleotides of the authentic genomic 5'
terminus.
The genomic 5' terminus of JV was defined by homopolymer tailing and
PCR, using a commercial kit (5' RACE; Gibco-BRL) in combination
with a
number of custom oligonucleotide primers. Separate lots
of cDNA were
then synthesized from the purified viral RNA and
a single primer JV3
(5'-
406TGTACCCCTCGTAAAACTC
388-3').
The cDNA was tailed with A or C residues at the 3' terminus
by
using terminal deoxynucleotide transferase in separate reactions
and
amplified by two successive rounds of PCR using
Pfu
polymerase
(Stratagene, Cambridge, United Kingdom) with either primers
5'
T
25VN 3' or the 5' RACE-abridged anchor primer/abridged
universal
amplification primer (Gibco-BRL) and the specific primers for
nested PCR JV4
(5'-
82ATTCTGGGTCACTAACTTTG
63-3') and
JV5 (5'-
55GTGGTCCAGCAACTTTAAC
37-3').
Sequence data obtained from clones were used to synthesize specific
primers for direct sequencing of both strands of amplified
cDNA with an
Applied Biosystems model 373A automated sequencer
using
Taq
cycle dideoxy terminator chemistry. Computer analyses
of the sequence
data were performed using Lasergene software (DNASTAR
Inc.,
Madison, Wis.). Oligonucleotides were synthesized on a Millipore
Expedite 8909 automated synthesizer using

-cyanoethylphosphoramidite
chemistry.
JV has a genome of 7,338 nucleotides, excluding the poly(A) tail, and a
nucleotide composition of A (20.7%), G (26.2%), T
(23.4%), and C
(29.6%), with an overall G:C content of 55.8%.
The nucleotide
sequence contains characteristic motifs located
at the 5' terminus of
the genome and the start of ORF 2 (Fig.
1). Within the first 24 nucleotides at
the 5' terminus of the
genome, 18 are conserved when compared to the
similar motif at
the start of ORF 2. At the 5' terminus is a guanosine
residue
which is followed immediately by the translation termination
codon
(TGA). The first translation initiation codon at nucleotide
position
5 aligns with the predicted start codon for ORF 2; however,
the
reading frame terminates after only 17 amino acids. The first
initiation codon for a large uninterrupted ORF that fits the features
of ORF 1 from other caliciviruses is located at nucleotide 22
and is
situated within a favorable context (GAT
ATGGAT)
for translation initiation by the ribosome scanning model
(
32).
Thus, the JV 5' noncoding region is slightly longer
than the 5'
noncoding region of feline calicivirus (19 nt) and rabbit
hemorrhagic
disease virus (10 nt). This is in striking contrast to
those of
the human enteric viruses Norwalk, Southampton, and Lordsdale,
in which there are just four nucleotides in the 5' noncoding region.
In
addition, the first seven amino acids of both ORF 1 and ORF
2 are
highly conserved in the human enteric caliciviruses (
7).
This, together with the location of the first in-frame initiator
codon
in JV at position 22, strongly suggests that the AUG at
nucleotide
position 11 in both group 1 and group 2 human NLVs
is likely to be the
authentic initiator codon, because in both
cases it is situated in a
favorable context for translation initiation.

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FIG. 1.
Diagrammatic representation of reading frame usage in
JV. The nucleotide coordinates of the translation products are numbered
on the open boxes. The repeat motifs at the 5' genomic terminus and the
predicted 5' terminus of the subgenomic RNA are aligned beneath the
genomic map. Shaded boxes indicate the genomic locations of these
motifs.
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As expected, JV ORF 1 encodes the 2C-like helicase, 3C-like protease,
and 3D-like RNA polymerase motifs characteristic of
the caliciviruses
(Fig.
2). At 1,680 amino acids, the ORF 1 polyprotein
is similar in size to that of the group 2 polyprotein from
Lordsdale
virus (1,699 amino acids). The polyprotein sequences from
group
1 and group 2 NLVs have been compared (
10). This
analysis showed
a similar overall organization, although there was
little identity
between group 1 and group 2 polyproteins within the
first 150
N-terminal amino acids. JV also has a highly divergent amino
terminus
for the first 100 amino acid residues, but overall it is more
closely related to the group 1 viruses. It is notable that the
predicted cleavage dipeptide
321QG in both group 1 and 2 human viruses is also present at the
N terminus of the 2C-like helicase
and is replaced by a
683QA dipeptide in the corresponding
C-terminal cleavage site (
38).
Interestingly, the genomic
RNA of JV contains several polypyrimidine
tracts that encode highly
unusual proline-rich regions in the
predicted translation product of
the N-terminal region, as previously
described for Lordsdale virus
(
10).

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FIG. 2.
Translation products encoded by the three major ORFs of
JV. The conserved motifs defining the 2C helicase (GPPGIGKT), 3C
protease (GDCG), and 3D RNA-dependent RNA polymerase (GLPSG.....YGDD)
are underlined with asterisks. The putative cleavage sites surrounding
the 2C helicase are indicated by shaded boxes. The amino acid sequence
coordinates for each of the three reading frames are on the left.
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The predicted molecular size of the JV capsid (56 kDa) is in close
accordance with the estimated size of the capsid protein
from partially
purified virions of the candidate bovine enteric
calicivirus, Newbury
agent 2, described in a recent preliminary
report (
9) and
the capsid of a porcine calicivirus from the
United States
(
45). Alignment of the JV ORF 2 translation product
with representative examples of group 1 and group 2 NLVs shows
that the
capsid protein can be divided into the same three discrete
regions as
previously reported for the NLVs (
11,
17,
36).
This
observation is consistent with the domain organization proposed
for the
primary sequence of the Norwalk virus capsid protein (
46).
The region of most significant homology with the NLVs occurs within
the
N-terminal 274-amino-acid residues of JV (55.1 to 60.5% amino
acid
identity). This part of the protein has been predicted to
form a

-barrel structure comprising the lower shell domain (S)
of the
capsid dimer. The C-terminal region of the JV capsid (395
to 519 amino
acids) is slightly more variable (48.4 to 53.8%).
A central
hypervariable region predicted to encode the projecting
arched domain
of the virus capsomere is located between amino
acids 275 and 394. In
Norwalk virus, regions 2 and 3 of the molecule
contain important
antigenic components of the virion capsid recognized
by monoclonal
antibodies (
24). In caliciviruses, the capsid
protein is
normally in the size range of 58 to 60 kDa. In the
case of feline
calicivirus, the capsid protein is encoded by ORF
2 and synthesized as
a larger precursor protein (671 amino acids)
that undergoes cleavage by
the 3C-like protease encoded by ORF
1 to yield a final mature capsid
product of 547 amino acids (
5,
54). However, in the NLVs,
there is no evidence that the capsid
protein is expressed as a
precursor that undergoes modification
by the genomically encoded
3C-like protease. Consistent with this
observation for enteric
caliciviruses, the genome of JV has a
smaller reading frame for ORF 2, encoding a capsid of only 519
amino acids. Uniquely among the
caliciviruses analyzed to date,
the initiation codon for this ORF
overlaps the 3' end of ORF 1
by 11
nucleotides.
The third ORF of 669 nucleotides (ORF 3) encodes a relatively small
protein of 223 amino acids and is located in frame

2
relative to ORF
1. This ORF has a counterpart in all other caliciviruses,
although the
biological function remains unknown. At 223 amino
acids, the ORF 3 protein is larger than that of both the rabbit
hemorrhagic disease
virus and feline calicivirus proteins (117
and 106 amino acids,
respectively) and is closer in size to the
group 1 (211 amino acids)
rather than the group 2 (268 amino acid)
NLV ORF 3 proteins. The
predicted protein is basic and hydrophilic
and contains no cysteine
residues. The AUG initiator codon of
JV ORF 3 overlaps ORF 2 by eight
nucleotides.
ORF 3 protein has been detected in feline calicivirus-infected cells
(
25), and its counterpart in rabbit hemorrhagic disease
virus has been described as a virion-associated protein
(
57).
It has also been suggested as an RNA binding protein
(
42). JV
ORF 3 is closest in size to ORF 3 from the group 1 NLVs, and alignment
with ORF 3 from the group 1 and 2 NLVs (data not
shown) indicates
that the overall primary sequence also correlates most
closely
to group 1 NLV ORF 3 (36.7% for Norwalk virus to 46% for
Southampton
virus). The 3' end of the genome contains 70 untranslated
nucleotides
prior to the poly(A)
tail.
In vitro analysis of the JV capsid protein.
A subgenomic clone
containing JV ORF 2 was constructed by amplification of the cDNA. A
2,361-bp amplicon was generated by PCR with the primer pair JVsubF
(5'-ACAAACGTTAACTAATACGAC TCACTATA5047GTAAATGAAGATGACTGAC5065-3') and JVsubR
(5'-AACAAACAAGGATCCT(25)-3'), using
standard reaction conditions as described previously. Restriction
enzyme cleavage sites for HpaI and BamHI,
respectively, are italicized, and the T7 promoter is in bold type. The
resulting amplicon was digested with the appropriate restriction
enzymes and cloned into pSP73 (Promega). This recombinant plasmid
(pJVC1) was resequenced to ensure that it was an authentic copy of the
JV consensus for ORF 2 under the control of the T7 promoter. Purified
plasmid pJVC1 was used as a template for in vitro protein synthesis,
using a T7 RNA polymerase-coupled reticulocyte lysate system (TNT;
Promega) in accordance with the manufacturer's instructions. The
reaction mixture (total volume, 25 µl) was incubated at 30°C, and
the reaction was stopped after 1 h for immunoprecipitation and
analysis of reaction products by sodium dodecyl sulfate
(SDS)-polyacrylamide gel electrophoresis (PAGE). Gels were stained and
prepared for autoradiography by treatment with 1 M sodium
salicylate-50% methanol for 30 min at room temperature. Gels were
then dried under vacuum and exposed to Kodak XAR-5 film at
70°C.
Calf 321/93 (11th passage) was infected with a fecal suspension from
calf 319/92 (10th passage) as described above. Blood
samples for serum
analysis were collected from calf 321/93 before
infection with JV and
then at weekly intervals. Calf 321/93 was
reinfected orally with
aliquots of the same inoculum at 1, 2,
and 4 weeks after the first
infection. Translation products from
the TNT-coupled
transcription-translation reaction of pJVC1 (5
µl) were incubated
with 2 µl of undiluted bovine antiserum in
600 µl of
radioimmune precipitation assay (RIPA) buffer (10 mM
Tris-HCl [pH
7.5], 1 mM EDTA, 0.15 mM NaCl, 0.1% SDS, 0.5% Empigen
BB, 0.1 mM
phenylmethylsulfonyl fluoride) and incubated at 37°C
for 1 h.
Immune complexes formed with bovine antisera were captured
by using
protein G immobilized on Sepharose 4B Fast Flow beads
(Sigma, Poole,
United Kingdom). The beads were washed three times
with RIPA buffer and
with a final wash in PBS before derivitization
in sample-dissociating
buffer and separation by SDS-PAGE. pJVC1
used as a template in a
coupled transcription-translation reaction
gave a single product of 55 kDa when analyzed by SDS-PAGE, indicating
that in this system only ORF
2 is translated. Preimmune serum
obtained from colostrum-deprived,
newborn calf 321/93 before experimental
infection with JV was used in
an immunoprecipitation reaction
with labelled JV capsid. This serum
showed that antibodies to
the JV capsid protein were not present prior
to infection. However,
postinfection antiserum (4 weeks) was able to
immunoprecipitate
the JV capsid protein (Fig.
3). All 11 calves used in the serial
passage of JV developed diarrheal symptoms following oral
administration
of the JV inoculum. The presence of JV in the
postinfection diarrheal
stool samples of each calf and the
seroconversion of calf 321/93
(11th passage) to the JV capsid protein
indicates the highly infectious
and immunogenic nature of this agent.

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FIG. 3.
RIPA of the JV capsid protein produced by in vitro
transcription/translation. Lane A, preinfection serum from a
colostrum-deprived, newborn calf. Lane B, serum taken at 4 weeks
postinfection with JV. The position of the immunoprecipitated capsid
protein is marked (arrow). Molecular size markers (in kilodaltons) are
on the left.
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Phylogenetic analysis.
Unrooted phylogenetic trees were
constructed for a region of the 3D RNA polymerase for caliciviruses as
previously defined (3). Multiple alignments were performed
with CLUSTAL X (56), and unrooted trees were generated using
the neighbor-joining method (49). Trees were subjected to a
bootstrap analysis (12) using 1,000 data sets and output as
a graphic representation using DRAWTREE in the PHYLIP package
(13). Phylogenetic studies using the RNA polymerase (Fig.
4) and the hypervariable capsid region
(data not shown) revealed that JV is most closely related to the group 1 NLVs. This group of human enteric caliciviruses includes Norwalk virus, Southampton virus, and Desert Shield virus.

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FIG. 4.
Unrooted phylogenetic tree constructed for a region of
the 3D RNA-dependent RNA polymerase gene showing the relationship of JV
to other caliciviruses. Shaded ellipses have been added to highlight
the distinction between the group 1 and group 2 NLVs. Accession numbers
(in parentheses) for caliciviruses are as follows; swine (AB009412);
Mexico (U22498); Toronto (U02030); SMA (L23831); Lordsdale (X86557);
Hawaii (U07611); Melksham (X81879); Norwalk (M87661); Southampton
(L07418); Desert Shield virus (DSV) (U04469); bovine Jena (AJ011099);
Sapporo (S77903); human calicivirus (HuCV) DCC (U67856); Manchester
(X86559); Parkville (U73124); HuCV 27 (U67859); HuCV Lon (U67858);
rabbit hemorrhagic disease virus (RHDV) (M67473); European brown hare
syndrome virus (EBHSV) (Z69620); Pan 1 (U52086); cetacean (U52091);
reptile (U52092); San Miguel sea lion virus (SMSV 1) (M87481); feline
calicivirus (FCV) Urbana (L40021); FCV F9 (M86379).
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A recent large Japanese survey for swine caliciviruses identified four
closely related but unique sequences by reverse
transcription-PCR.
Molecular phylogenetic studies linked these
porcine calicivirus
sequences to the group 2 NLVs
(
55). However, in contrast to
our study with JV, none of the
pigs from which viral sequences
were obtained had symptoms of
enteric disease. The close similarity
of the porcine and bovine
sequences to the NLVs suggests that
these viruses shared a relatively
recent common ancestor and raises
the intriguing possibility of an
animal reservoir for human infection.
The complete nucleotide sequence
of JV unequivocally establishes
this virus as a member of the
Caliciviridae. The sequence will
enable the development of
specific primers to study the molecular
epidemiology of bovine enteric
disease and also investigation
into the nature and extent of variation
in the bovine enteric
caliciviruses. Furthermore, it will be possible
to produce JV
capsid antigen by expression of ORF 2 in insect cells
using baculovirus
vectors, thus facilitating the development of the
materials required
to investigate the disease caused in cattle and
possibly other
species by
JV.
Nucleotide sequence accession number.
The sequence of JV has
been deposited in the EMBL and GenBank databases under accession no.
AJ011099.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Molecular
Microbiology Group, University Medical School, Southampton General
Hospital, Southampton SO16 6YD, United Kingdom. Phone: 44 1703 796975. Fax: 44 1703 774316. E-mail: inc{at}soton.ac.uk.
 |
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