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Journal of Virology, January 1999, p. 658-666, Vol. 73, No. 1
0022-538X/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Characterization of the Jembrana Disease Virus
tat Gene and the cis- and
trans-Regulatory Elements in Its Long Terminal
Repeats
Hexin
Chen,1
Graham
Wilcox,2
Gde
Kertayadnya,3 and
Charles
Wood1,*
School of Biological Sciences, University of
Nebraska, Lincoln, Nebraska 685881;
School of Veterinary Studies, Murdoch University, Murdoch 6150, Australia2; and
Disease Investigation
Center, Denpassai, Bali, Indonesia3
Received 20 April 1998/Accepted 9 October 1998
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ABSTRACT |
Jembrana disease virus (JDV) is a newly identified bovine
lentivirus that is closely related to the bovine immunodeficiency virus
(BIV). JDV contains a tat gene, encoded by two exons, which has potent transactivation activity. Cotransfection of the JDV tat expression plasmid with the JDV promoter
chloramphenicol acetyltransferase (CAT) construct pJDV-U3R resulted in
a substantial increase in the level of CAT mRNA transcribed from the
JDV long terminal repeat (LTR) and a dramatic increase in the CAT
protein level. Deletion analysis of the LTR sequences showed that
sequences spanning nucleotides
68 to +53, including the TATA box and
the predicted first stem-loop structure of the predicted Tat response
element (TAR), were required for efficient transactivation. The
results, derived from site-directed mutagenesis experiments, suggested
that the base pairing in the stem of the first stem-loop structure in
the TAR region was important for JDV Tat-mediated transactivation; in
contrast, nucleotide substitutions in the loop region of JDV TAR had
less effect. For the JDV LTR, upstream sequences, from nucleotide
196
and beyond, as well as the predicted secondary structures in the R
region, may have a negative effect on basal JDV promoter activity.
Deletion of these regions resulted in a four- to fivefold increase in
basal expression. The JDV Tat is also a potent transactivator of other animal and primate lentivirus promoters. It transactivated BIV and
human immunodeficiency virus type 1 (HIV-1) LTRs to levels similar to
those with their homologous Tat proteins. In contrast, HIV-1 Tat has
minimal effects on JDV LTR expression, whereas BIV Tat moderately
transactivated the JDV LTR. Our study suggests that JDV may use a
mechanism of transactivation similar but not identical to those of
other animal and primate lentiviruses.
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INTRODUCTION |
Jembrana disease was first
recognized in 1964 as an acute and infectious disease affecting Bali
cattle in the Jembrana district of Bali in Indonesia (5,
40). The virus that causes the disease was recently characterized
(9, 10). The morphogenesis, protein structure, antigenic
reactivity, and sequence analysis suggested that this virus is a
lentivirus related to the bovine immunodeficiency virus (BIV) (9,
10, 40). The most noticeable difference between Jembrana disease
virus (JDV) and BIV is the disease induced by each virus in cattle. JDV
causes an acute disease in Bali cattle (Bos javanicus) and
is endemic in parts of Indonesia (5, 40). In experimentally
inoculated cattle, the incubation period varied from 4.5 to 12 days
before the onset of clinical symptoms, which included fever, lethargy,
anorexia, and lymphadenopathy; the mortality rate was about 17%. In
recovered animals there was no recurrence of disease (35,
40). In contrast, experimental BIV infection results in only a
subclinical disease syndrome, with transient lymphocytosis and possibly
lymphadenopathy associated with follicular hyperplasia, and with no
obvious clinical disease (6, 36). Another difference between
BIV and JDV is the high titer of JDV (108 50% cattle
infective doses per ml) in plasma during the febrile period of the
disease; this has not been observed for BIV (6, 35, 36, 40).
JDV is closely related to BIV on the basis of nucleotide sequence
analysis. The complete RNA genome of JDV is 7,732 bp (9). It
is 750 bp shorter than the genome of BIV 127 (19). Like BIV and other lentiviruses, the JDV genome contains flanking long terminal
repeats (LTRs) and the structural genes gag, pol,
and env, which are characteristics of all retroviruses. On
the basis of sequence analysis, a number of accessory genes represented by small open reading frames (ORFs) exist in the central and
3'-terminal regions of the JDV genome. In particular, the homologous
sequence for the regulatory gene tat, which codes for the
important trans-acting regulatory protein found in all
lentiviruses characterized to date, was identified (9).
The putative Tat protein of JDV was predicted to be expressed from a
multiply spliced transcript that includes two coding exons derived from
separate ORFs in the central and 3'-terminal regions of the genome
(9). In the first coding exon there was a cysteine-rich
region, a core region, and a downstream basic domain that was found in
the Tat proteins of most lentiviruses, including BIV 127 (19). These domains have been suggested to be important for
their nucleic acid-binding and transactivation properties (8,
24). The presence of a BIV homologous tat sequence and
the presence of a Tat response element (TAR)-like element in the
extreme 5' end of the JDV RNA strongly suggest that viral
transactivation may occur and that it is mediated through an RNA
stem-loop structure similar to those found in BIV, equine infectious
anemia virus (EIAV), and primate lentiviruses (7, 8, 24).
To study the regulation of JDV gene expression, whether there is a
functional Tat protein, and whether active JDV transcription and
transactivation are responsible for high-titer JDV expression in
infected animals, we characterized the JDV promoter and its ability to
be transactivated by its homologous and heterologous Tat proteins. The
JDV tat exon 1 coding region, based on sequence analysis,
was cloned into a eukaryotic expression vector that contains the Rous
sarcoma virus (RSV) promoter. The promoter activities of the intact JDV
promoter, a series of 5' and 3' JDV LTR deletion mutants, and several
site-directed mutants were then studied. Our studies showed that JDV
Tat encoded by exon 1 possessed strong transactivation activities and
that the predicted JDV TAR region was important for the
transactivation. The JDV Tat is a ubiquitous and potent transactivator
that activated other lentivirus promoters tested in a variety of cell types.
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MATERIALS AND METHODS |
Cell culture.
The CV-1 cell line (ATCC CCL70) and primary
fetal bovine lung (FBL) cells (36) were cultured in
Dulbecco's modified Eagle's medium (DMEM) supplemented with 10%
fetal bovine serum (FBS) and penicillin-streptomycin. All FBL cells
used for transient transfection were cultured in vitro for no more than
six passages.
Construction of plasmids.
The various plasmids that were
used in the study, pBIV-CAT, pBTATC, pHIV-CAT, pRSV-HTAT, pRSV-CAT,
pHTLV-CAT, pSIV-CAT, and pHIV-2-CAT, have been described previously
(25, 27).
To generate the Tat eukaryotic expression plasmid, the putative JDV
tat exon 1 coding sequences were PCR amplified from JDV clone 147 (nucleotides [nt] 5000 to 7732) (9). By using
the forward primer 5' CAG ATA TGC CTG GTC CCT GG 3' and the reverse primer 5' TCC AGG ATC CAA CGA TCT AGT 3', the 321-bp fragment from nt
5005 to nt 5326 was amplified. The PCR product was then cloned into the
pGEM-T vector (Promega). To generate the Tat expression clone, the
tat insert was released from the pGEM-T vector by digestion with NcoI, blunt ended by treatment with Klenow fragment,
and then cut with BamHI. The vector plasmid pRSV-CAT
(25) was cut with HindIII and filled in with
Klenow fragment, followed by digestion with BamHI to release
the chloramphenicol acetyltransferase (CAT) gene. The tat
fragment was then ligated to the vector downstream of the RSV LTR
promoter. This JDV tat expression plasmid was designated pRSV-JTAT.
To construct the JDV LTR clone from JDV clone 147, an EcoRI
fragment (nt 6798 to 7732) which contained the U3 and R regions was
subcloned into vector pUC18 to generate plasmid pUC18-U3R. To generate
a clone with the entire LTR segment, pUC18-U3R and another JDV plasmid,
139, which contained a JDV gene fragment from nt 19 to nt 2881, were
used as templates for overlapping PCR. The primers used were pUC18
primer 40 (5' GTT TTC CCA GTC ACG AC 3'), which is upstream of the U3
region, and JDV primer U5 (5' GCG CAA GCT TTT GGG TGG TTC T 3', mutated
at nt 159 to engineer a HindIII site), which ends at the
boundary of JDV U5 and the noncoding region of the gag gene.
Because the two template plasmids overlapped by 110 bp at the R region,
the PCR product covered the entire JDV LTR. The PCR product was then
inserted into vector pGEM-T to generate plasmid pGEM-JLTR. The JDV LTR fragment was released from pGEM-JLTR by cutting with
HindIII and was then ligated into pUC18-CAT at the
HindIII site to generate plasmid pJLTR-CAT. This JDV LTR
clone was confirmed by DNA sequencing.
To construct various LTR 3'-end deletion clones, PCR was performed with
a single forward upstream primer, JDV-U3.1 (nt 7324 to 7347; 5' GTC CTC
CTA GTT CGG ATC CTT T 3', mutated to generate a BamHI site)
and various LTR downstream deletion primers: JDV-R (nt 7732 to 7713; 5'
TGC CGA AAG CCA AAC GAC CT 3'), JDV-R2 (nt 7709 to 7690; 5' TTC ACC TCG
GCC GGG CTA CC 3'), JDV-R3 (nt 7677 to 7658; 5' TGC CTT ACA GGG TAC CAG
CT 3', mutated to generate a KpnI site), and JDV-R4 (nt 7651 to 7628; 5' TCG AAG CTT CAG CTA TCC AGA GC 3', mutated to generate a
HindIII site). The PCR products were then cloned into
the pGEM-T vector before insertion into a CAT expression vector. These
3' deletion clones were designated pJDV-U3R, p3D+85, p3D+53, and
p3D+21, according to their positions in the LTR (Fig.
1).

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FIG. 1.
Schematic representation of the JDV LTR promoter
construct and the various derived deletion clones used for transient
transfection analysis. The locations of the various promoter elements,
U3, R, U5, the TATA box, and the putative TAR region, are indicated.
Several predicted regulatory factor binding sites, for NF- B, SP-1,
AP-4, and the core enhancer element, are also shown. Solid lines
represent the sequences retained in the LTR deletion plasmids. The 5'
and 3' ends for each deletion plasmid are numbered with respect to the
transcription start site (+1).
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To construct 5' deletion clones, similar strategies were used, and the
5' deletion fragments were PCR amplified by using plasmid pJD+108 as a
template. A single downstream reverse primer, CAT-R1 (5' GTC TTT CAT
TGC CAT ACG GA 3'), located in the CAT gene, and various upstream
forward primers, U3-2 (nt 7431 to 7450; 5' CCC GGA GCT CGA AAT ATC TGA
3'), U3-3 (nt 7543 to 7562; 5' CAC GTA GCT TGG AGG ATC AG 3'), U3-4 (nt
7554 to 7573; 5' GAG GAT CCG CTG ATA CCT AA 3'), and U3-5 (nt 7575 to
7598; 5' AAT AGT AGT TCC CTT TTG CAT GCT 3') were used for PCR. All the
amplified fragments were cut with EcoRI at a site located
within the reverse primer CAT-R1 and then ligated into vector
pJLTR-CAT, which was cut with HindIII, blunt ended, and
then cut with EcoRI. These 5' deletion clones were
designated p5D-196, p5D-81, p5D-68, and p5D-50. Likewise, two internal
deletion clones, designated pJD-81+53 and pJD-68+53, were constructed
by using plasmid p3D+53 as a template for PCR (Fig. 1).
Site-directed mutagenesis.
All mutants were generated by
overlapping PCR methodology as described elsewhere (1). PCR
products were cloned into vector pGCAT-A upstream of the CAT gene. The
primers used in the mutagenesis studies are listed below (Table
1).
Northern blotting.
Northern blotting was carried out as
described previously (1, 42). Briefly, RNA samples were
purified with the RNeasy Mini kit (Qiagen, Hilden, Germany), and 10 µg of each RNA sample was separated in a 1.2% formaldehyde agarose
gel and then transferred to a supported nitrocellulose membrane. The
membrane was baked at 80°C for 2 h, prehybridized (25 mM
KPO4 [pH 7.4], 5× SSC [1× SSC is 0.15 M NaCl plus
0.015 M sodium citrate], 5× Denhardt's solution, 50 µg of salmon
sperm DNA/ml, 50% formamide) for 2 to 5 h, then hybridized with a
32P-labeled DNA probe in hybridization solution
(prehybridization solution containing 10% dextran sulfate). After
hybridization, the membrane was washed twice, each time with 2×
SSC-0.1% sodium dodecyl sulfate (SDS) and 0.25× SSC-0.1% SDS
solutions at 65°C, and then exposed to Kodak XAR-5 film with an
intensifying screen at
80°C overnight. The probes used were labeled
by the random-primed labeling method with the NEBlot kit (New England
Biolabs). The CAT DNA fragment used for a probe was cut out from
plasmid pGCAT-A (Promega), and the glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) gene probe was used as an internal control. The
GAPDH DNA fragment was amplified by PCR with primers GAPDH1 (5' CCA TGG
AGA AGG CTG GG 3') and GAPDH2 (5' CAA AGT TGT CAT GGA TGA CC 3').
Transfection and CAT assay.
Transfection was carried out
with CV-1 and FBL cells. About 2 × 105 cells were
plated into each 60-mm plate with 5 ml of DMEM containing penicillin-streptomycin and 10% FBS. About 24 h after plating, the cells were transfected with plasmid DNA with Lipofectamine (GIBCO-BRL). Depending on the experiments, 0.25 to 1 µg of CAT reporter plasmid DNA, with various amounts (0 to 2.5 µg) of
tat plasmid DNA, was mixed with 10 µl of Lipofectamine
reagent in 500 µl of DMEM. The DNA mixture was then added to the
cells, which had been washed twice with DMEM without FBS. Fresh DMEM
with 20% FBS was added to the transfected cells 12 h after
transfection. At 48 h after transfection, cells were lysed in 1 ml
of lysis buffer (CAT ELISA kit; Boehringer Mannheim).
The protein concentration of each lysate was determined by the
bicinchoninic acid protein assay (Pierce), and the amount of CAT enzyme
in 10 µg of total cellular protein was determined by the CAT
enzyme-linked immunosorbent assay (ELISA) using protocols described by
the manufacturer (Boehringer Mannheim). In some cases, the
-galactosidase (
-Gal) expression plasmid was cotransfected into
cells to normalize the transfection efficiency. The relative amounts of
CAT were first determined by the CAT ELISA and then standardized to the
experimental
-Gal units. The
-Gal activities were determined by a
standard assay as described in the molecular cloning manual of Sambrook
et al. (33). Each transfection was repeated three times, and
the data were averaged.
Sequence analysis.
The secondary structure of RNA was
determined by using the RNA folding program of the Genetics Computer
Group (GCG) (Wisconsin package). Protein sequences were aligned with
the GCG Pileup program. The tat sequences from the JDV
genome (GenBank accession no. U21603), BIV genome (GenBank accession
no. M32690), and human immunodeficiency virus type 1 (HIV-1) genome
(GenBank locus, hivhxb2cg) were translated into amino acid sequences
with the GCG Translate program. The HIV-2 Tat peptide sequence (GenBank
accession no. p04605) was obtained from SwissProt.
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RESULTS |
JDV Tat encoded by exon 1 can activate LTR to high levels.
To
test the ability of JDV Tat to transactivate the JDV LTR, the reporter
plasmid pJDV-U3R was transfected into CV-1 and FBL cells with or
without plasmid pRSV-JTAT, and the expression of the LTR was then
determined by CAT analysis. The basal expression levels of the JDV LTR
were higher in FBL cells than in CV-1 cells (data not shown). In CV-1
cells, when 1 µg of pJDV-U3R was cotransfected with different amounts
of pRSV-JTAT (0, 0.25, 0.5, 1.0, and 2.5 µg), JDV Tat was found to
transactivate LTR expression 27-fold with the addition of 1 µg of
plasmid pRSV-JTAT (Fig. 2). However, high
concentrations of the tat plasmid suppressed
transactivation. In FBL cells, the highest transactivation level
(10-fold) was achieved when 0.5 µg of the tat plasmid was
added (Fig. 2). Even though overall CAT activity in the presence of Tat
was much higher in FBL cells than in CV-1 cells, the relative
activation by Tat was still much lower in FBL cells. The lower
transactivation was likely due to the high basal expression levels of
the JDV LTR in FBL cells.

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FIG. 2.
Cotransfection of the JDV LTR with various amounts of
JDV tat (pRSV-JTAT). pJDV-U3R was transfected into either
FBL (0.5 µg of DNA) or CV-1 (1 µg of DNA) cells with varying
amounts of pRSV-JTAT (0, 0.25, 0.5, 1.0, and 2.5 µg of DNA) by using
Lipofectamine. The total amount of DNA used was kept constant by
adjusting with pUC18 DNA. The fold activation, calculated as the
average concentration of CAT protein (picograms of CAT protein per
milligram of total cellular protein) in the presence of tat
divided by the average concentration of CAT protein in the absence of
tat, is shown above each bar.
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To further verify that JDV Tat encoded by exon 1 is a potent
transactivator which acts on the JDV LTR at the transcriptional level,
Northern blot analysis experiments were performed. When 1 µg of
pJDV-U3R was cotransfected into CV-1 cells with different concentrations of the JDV tat plasmid, higher levels of CAT
mRNA were detected in the presence of tat (Fig.
3). This is consistent with the increase
in CAT protein levels in the presence of the JDV tat (Fig.
2). It remains to be determined whether the observed transactivation
reflects direct interaction of the putative JDV Tat with the LTR or
whether it is indirectly mediated by Tat through cellular factors.

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FIG. 3.
Northern blot analysis for CAT-specific transcripts. The
analysis was carried out with a 32P-labeled CAT-specific
probe. The two CAT-specific RNA species indicated by arrows are the
spliced and unspliced forms of the CAT mRNA (2). A GAPDH
probe was used as an internal control to normalize the amount of RNA
loaded onto each lane.
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Localization of regulatory elements important for basal and
transactivation activity in JDV LTR by deletion analysis.
Sequence
analysis showed that the U3 region of the JDV LTR contained many
cis-regulatory factor binding sites, such as those for
NF-
B, SP-1, and AP-4 (Fig. 1) (9). The R region of JDV was predicted to contain the putative TAR region, corresponding to the
TAR of BIV (19-21), and the JDV R region can potentially form three stem-loop secondary structures similar to those of BIV (Fig.
4A) (9). To define the
cis- and trans-acting sequences in the LTR
necessary for basal expression as well as the TARs on the JDV LTR, we
constructed a series of 5' deletion mutants in which we deleted one or
more of the regulatory elements NF-
B, SP-1, core enhancer, and AP-4
(clones p5D-196, p5D-81, p5D-68, and p5D-50 [Fig. 1]). To map the
potential TAR sites on the LTR, a set of 3' deletion mutants was also
generated. These mutants were designed in such a way as to delete the
U5 region alone or the U5 region as well as one or more of the three
predicted stem-loop structures in the putative TAR region in the LTR
(clones pJDV-U3R, p3D+85, p3D+53, and p3D+21 [Fig. 1]). Two other
internal deletion mutants, pJD-81+53 and pJD-68+53, were constructed to
further narrow down the region in the JDV LTR that was required for the promoter activity and transactivation function. Transfection of these
LTR deletion plasmids in the absence or presence of JDV tat
(pRSV-JTAT) was performed in order to determine the effects of each of
the predicted elements in viral transcription and transactivation.

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FIG. 4.
(A) The predicted secondary structure of the putative
JDV TAR region. RNA folding was performed by the RNAFOLD program in the
GCG Wisconsin package. The entire R region of the JDV LTR was included
in the analysis. The free energy for the folded structure is 44.8
kJ/mol. (B) Effects of site-directed mutagenesis within the first
stem-loop structure of JDV TAR on tat transactivation. Based
on the deletion clone p3D+53, we constructed a set of mutation
constructs, each of which bears three nucleotide substitutions. The
mutated nucleotides are boldfaced, and their corresponding positions in
the stem-loop structure are shown. In each experiment, 0.5 µg of the
wild-type plasmid (p3D+53) or 0.5 µg of each mutant plasmid was
cotransfected into CV-1 cells with the JDV tat plasmid. At
48 h posttransfection, cells were lysed and the lysates were
subjected to a CAT ELISA as described in Materials and Methods. The
average fold activation, calculated as described in the legend to Fig.
2 and derived from three independent experiments, is presented for each
plasmid.
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Like the wild-type JDV LTR, most LTR deletion mutants had higher basal
activities in FBL cells than in CV-1 cells (Table
2). The JDV LTR construct, pJDV-LTR,
which contained the entire U3, R, and U5 regions of the LTR, had
activity similar to that of the promoter construct, pJDV-U3R, which
contained only the U3 and R regions. This suggested that the U5 region
does not play an important role in basal promoter functions, as seen in
other retroviruses (7). It was interesting that the basal
promoter activity of pJD-196, which had a 5' deletion including the
NF-
B site, was much higher than that of the intact LTR. Its activity was about fivefold higher in CV-1 cells and fourfold higher in FBL
cells. It is possible that a JDV negative regulatory element is located
between nt
236 and
196, as was found previously in a number of
other lentivirus LTRs, including those of BIV, HIV, and EIAV (7,
15, 31). Deletion of sequences between nt
196 and
50,
represented by clones p5D-81, p5D-68, and p5D-50, reduced the promoter
activity relative to clone p5D-196 in both FBL and CV-1 cells. Clone
p5D-50, in which all regulatory elements except the TATA box were
deleted, had the lowest basal activity. The predicted regulatory
elements, such as NF-
B, SP-1, core enhancer, and AP-4, may therefore
play an important positive role in the basal expression of the JDV LTR.
Deletion of the LTR from the 3' end was not expected to affect basal
promoter activity. The deletion of the U5 in pJDV-U3R had no effect,
and deletion of part of the R region up to position +53 in p3D+53 also
had little effect. Interestingly, deletion of part of the R region,
including the predicted TAR stem-loops, in clone p3D+21, resulted in
much-elevated basal expression levels both in CV-1 and in FBL cells
(Table 2), suggesting that the presence of the secondary structure in
the R region or other factors targeting the R region may be involved in
affecting basal expression of the LTR. Two other deletion clones, pJD-81+53 and pJD-68+53, which retained all the 5' (SP1, AP-1, and
TATA) and 3' elements essential for basal promoter activity, have
activities slightly lower than, but not significantly different from,
that of the intact promoter (Table 2).
In the presence of JDV Tat, all the LTR 5' deletion clones except
p5D-50 were transactivated about 15- to 32-fold in CV-1 cells and about
5- to 10-fold in FBL cells (Table 2). Although basal promoter activity
was retained in the deletion construct p5D-50, it was not
transactivated by JDV Tat. This suggests that the upstream elements in
the U3 region, such as AP-4, may be required for effective
transactivation by Tat. Among the three active 5' deletion clones
(p5D-196, p5D-81, and p5D-68), p5D-196 was least responsive to Tat
transactivation; the lower level of transactivation observed in pJD-196
could be due to the increased basal expression level. In the 3'
deletion mutants, deletion of U5 in pJDV-U3R and deletion of the third
and of both the second and the third stem-loop of the TAR region in
p3D+85 and p3D+53, respectively, seemed to have no marked effect on
transactivation. Therefore, the second and third stem-loops of the TAR
structure located in the R region of the LTR seem to be dispensable for
transactivation by Tat. The most significant change in Tat
transactivation was observed in pJD+21. This clone had lost its ability
to be stimulated by Tat in both CV-1 and FBL cells (Table 2). This
suggests that the putative stem-loop 1 of the TAR region formed by nt 1 to 30 was critical for Tat transactivation. It was also of interest that the transactivation by Tat in FBL cells, for most of the promoter
constructs tested, seemed to be much lower than that induced in CV-1
cells. This was most likely due to the much higher basal expression
levels of the promoter constructs in FBL cells. Despite these
differences, the transactivation patterns of these promoters in the two
different cell types were very similar.
The stem-loop structure is required for transactivation by JDV
Tat.
The deletion analysis described above suggests that JDV Tat
can strongly activate the JDV LTR through binding to the TAR region located downstream of the transcription start site. The TAR RNA could
assume an extensive secondary structure that contains three stem-loop
structures (Fig. 4A). Deletion to position +53 from the 3' end of the
TAR structure was predicted to have no effects on the formation of the
first stem-loop structure and has no effects on transactivation (Table
2). To further test whether the first stem-loop secondary structure is
required for transactivation by JDV Tat, a set of JDV LTR mutants, each
of which differed from the deletion clone p3D+53 by 3 nt, was generated
(Fig. 4B). Mutagenesis of the stem structure in clones pJD+53M1,
pJD+53M2, and pJD+53M4 was predicted to perturb the proposed secondary
structure within the first stem-loop region, whereas for clone pJD+53M3
it was predicted to have no effects. Our transactivation results
supported the prediction. Clone pJD+53M3 still responded to Tat
transactivation, even though the levels were slightly lower than those
for the wild-type construct (p3D+53) (Fig. 4B). In contrast, mutants
pJD+53M1, pJD+53M2, and pJD+53M4, which have mutations in the stem
structure, lost their ability to be stimulated by Tat (Fig. 4B). Our
results indicated that JDV Tat-mediated transactivation was quite
sensitive to changes in RNA secondary structure in the stem structure
of the first stem-loop but was relatively unaffected by sequence substitutions in the loop region.
Activation of the JDV LTR by BIV Tat and HIV Tat.
Given the
similarities of JDV Tat and the JDV TARs with those of BIV and other
primate lentiviruses, we determined if BIV and HIV Tat could stimulate
the JDV LTR. The presence of BIV tat stimulated JDV LTR
expression in both CV-1 and FBL cells (Fig. 5A). The transactivation levels seemed to
be much lower than those observed with JDV tat (Fig. 2). As
observed with pRSV-JTAT, the levels of transactivation by BIV Tat
seemed to be lower in FBL cells than in CV-1 cells, probably due to the
higher basal level of JDV LTR expression in bovine cells.

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FIG. 5.
(A) Transactivation of the JDV LTR by BIV Tat in CV-1
and FBL cells. The pJDV-U3R plasmid (1 µg of pJDV-U3R for CV-1 cells
and 0.5 µg for FBL cells) and varying amounts of the BIV
tat plasmid (0, 0.25, 0.5, 1.0, and 2.5 µg) were
cotransfected into cells by using Lipofectamine as described in
Materials and Methods. (B) Effects of HIV Tat on JDV LTR expression in
CV-1 and FBL cells. The pJDV-U3R plasmid (1 µg for CV-1 cells and 0.5 µg for FBL cells) and varying amounts of the HIV tat
plasmid (0, 0.25, 0.5, 1.0, and 2.5 µg) were transfected by using
Lipofectamine, and the CAT protein concentration were determined. The
fold activation is shown above each bar.
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Previous studies with HIV Tat and the BIV LTR have shown that HIV Tat
can stimulate BIV expression, but only a two- to threefold increase in
transactivation was observed in FBL cells (27). When
different concentrations of HIV tat were cotransfected with JDV LTR into FBL cells (Fig. 5B), a maximum of about twofold
transactivation was observed. Interestingly, no activation was observed
with the largest amount of HIV tat used. In contrast to FBL
cells, no transactivation of the JDV LTR by HIV tat was
observed in CV-1 cells, suggesting that HIV Tat cannot activate JDV LTR
effectively and that cellular factors may also play a role in the
expression and transactivation of the JDV LTR.
Transactivation of BIV and HIV LTRs by JDV Tat.
The JDV Tat
protein not only has sequence homology with BIV Tat but is also
structurally quite homologous to the HIV Tat protein, containing the
cysteine, core, and basic functional domains (24). Therefore, we were interested in determining whether JDV Tat would stimulate the BIV and HIV LTRs. pRSV-JTAT was cotransfected with the
BIV and HIV promoters, and the expression levels were determined. Cotransfection of pRSV-JTAT and pBIV-LTR-CAT into either CV-1 cells
(Fig. 6A) or FBL cells (Fig. 6B) showed
very strong transactivation of the BIV LTR by JDV Tat. JDV Tat was at
least as active as BIV Tat in stimulating BIV LTR expression. It
activated the BIV LTR in CV-1 cells about 29-fold when 0.5 µg of the
plasmid DNA was added. In contrast, similar amounts of BIV Tat
activated the BIV LTR only about 24-fold. Similar patterns of
transactivation were observed in FBL cells. JDV Tat transactivated the
BIV LTR about 13-fold, while BIV Tat activated the BIV LTR about
9-fold.

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FIG. 6.
Comparison of the effects of JDV Tat and BIV Tat on BIV
LTR expression in either CV-1 (A) or FBL (B) cells. Cells were
transfected with 0.5 µg of pBIV-LTR-CAT and varying amounts of the
JDV tat plasmid (0, 0.25, 0.5, 1.0, and 2.5 µg) by using
Lipofectamine. The fold transactivation is shown above each bar.
|
|
Since it has been demonstrated previously that BIV Tat can
transactivate the HIV LTR (27), and given the similarity
between BIV and JDV Tat, JDV Tat was tested for its ability to activate the HIV LTR. Either JDV tat (pRSV-JTAT) or HIV
tat (pRSV-HTAT) DNA was cotransfected with pHIV-LTR-CAT into
CV-1 cells at varying concentrations, and the levels of CAT expression
were measured (Fig. 7). The presence of
JDV tat transactivated HIV LTR expression very strongly. The
presence of 1 µg of JDV tat plasmid stimulated HIV
expression about 69-fold; a similar amount of HIV tat
plasmid stimulated HIV LTR expression about 49-fold. These results
suggest that JDV Tat is a potent transactivator for the HIV LTR and is as active as HIV Tat itself.

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FIG. 7.
Comparison of the effects of JDV Tat and HIV Tat on HIV
LTR expression. CV-1 cells were transfected with 0.1 µg of
pHIV-LTR-CAT and varying amounts of the JDV or HIV tat
plasmid (0, 0.25, 0.5, 1.0, and 2.5 µg) by using Lipofectamine. The
fold transactivation is shown above each bar.
|
|
JDV Tat can transactivate several other retrovirus LTRs.
Since
JDV Tat possesses potent transactivating functions on heterologous BIV
and HIV-1 promoters, it may be a ubiquitous transactivator that can act
in a TAR-dependent or TAR-independent manner. To test this possibility,
JDV Tat was tested for its activity on several other lentivirus and
nonlentivirus retrovirus promoters, such as the HIV-2, simian
immunodeficiency virus (SIV), human T-lymphotropic virus type 1 (HTLV-1), and RSV promoters (Table 3).
These promoter CAT constructs were cotransfected with JDV tat (pRSV-JTAT) into either CV-1 or FBL cells, and the
transactivation levels were determined. As expected, JDV Tat activated
both HIV-2 and SIV lentivirus promoters. The levels of activation were
comparable to that observed with the JDV LTR, ranging from about 17- to
22-fold in CV-1 cells and from about 5- to 9-fold in FBL cells. The
lower activation levels observed in FBL cells were probably due to
higher basal expression levels of these promoters in FBL cells.
Interestingly, JDV Tat activated the two nonlentivirus promoters HTLV-1
and RSV. Even though the levels were much lower with these promoters,
they were significant and consistent. The HTLV-1 promoter was
transactivated by JDV Tat about threefold in CV-1 cells and twofold in
FBL cells; the RSV promoter was activated about five- and threefold in
CV-1 and FBL cells, respectively.
 |
DISCUSSION |
Our study is the first to demonstrate that JDV contains a
functional tat gene and that exon 1 alone can transactivate
the JDV LTR-directed gene expression to high levels. JDV Tat not only transactivated every lentivirus LTR tested but also weakly activated other, nonlentivirus promoters, probably via a TAR-independent mechanism. This suggested that JDV Tat is a potent and ubiquitous transactivator. This strong transactivation function of JDV Tat may be
responsible for the ability of the virus to replicate to high titers in
infected animals. Virus titers of 108 50% infective doses
per ml in blood and plasma of infected animals have been reported
(35, 40). The ability of JDV Tat to transactivate BIV, HIV,
and other lentivirus promoters suggests that it may involve similar
mechanisms of transactivation (8, 11, 12, 14, 15, 17, 28).
Alignment of JDV, BIV, HIV-1, and HIV-2 Tat proteins showed that JDV
Tat has conserved cysteine-rich and core transactivation regions, like
BIV or HIV (Fig. 8). This may explain why
JDV Tat can transactivate BIV, HIV, and other lentivirus LTRs. The
basic region and the amino terminus have high homology with BIV Tat but
not with HIV Tat. The basic region is responsible for the binding of
Tat to TAR. This suggests that JDV Tat may have a TAR recognition
domain similar to that of BIV Tat and not to that of HIV Tat.
Differences in TAR recognition domains may explain why BIV Tat can
transactivate the JDV LTR and HIV Tat cannot. This speculation is
further supported by previous studies demonstrating that BIV Tat can
bind to its TAR site with high affinity and specificity. Unlike HIV
Tat, BIV Tat does not appear to use cellular proteins to stabilize RNA
binding in vivo (11). It turns out that the BIV TAR
recognition domain simultaneously recognizes the bulge and stem regions
of BIV TAR, which adopts an unusual structure, whereas HIV Tat proteins
use a single arginine residue within a short region of basic amino
acids to recognize a bulge region in TAR (11). Our results
suggest that JDV Tat may involve a similar BIV-like TAR recognition
domain. The JDV and BIV Tat proteins are much closer phylogenetically
and may have evolved to use similar mechanisms to recognize their RNA
targets.

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FIG. 8.
Alignment of amino acid sequences of JDV, BIV, HIV-2,
and HIV-1 Tat exon 1. Peptide sequences were aligned with the GCG
Pileup program. The putative N-terminal (N-TERM), cysteine-rich
(CYS-RICH), core region, basic, and C-terminal (C-TERM) domains of Tat
are underlined and labeled (24). Asterisks mark amino acids
that are conserved in JDV and other Tat sequences.
|
|
Previous studies on transactivation have focused mainly on the HIV
tat gene. Cellular proteins termed cyclin T and
cyclin-dependent kinase 9 (CDK9) have recently been found to be
involved in transcription activation of the HIV-1 LTR by Tat (41,
43). HIV Tat is predicted to interact directly with cyclin T,
which, in turn, specifically binds to CDK9 to form a Tat-cyclin T-CDK9
complex (13, 39). Tat appears to bind the cyclin-T complex
and to recruit the complex to the HIV-1 promoter, a process that
requires the binding of Tat to the TAR bulge and of cyclin T to the TAR
loop. The cyclin-T-associated CDK9 can then phosphorylate the
C-terminal domain of RNA polymerase II, leading to a transition from
nonpossessive to possessive transcription (13). It is
possible that in transactivation of the JDV LTR, JDV Tat adopts a
mechanism similar to that of HIV. Several lines of evidence suggest
that this might be the case. First, sequence analysis indicated that
JDV Tat had some sequence homology with HIV Tat and contained similar
highly conserved domains. Our data also showed that JDV Tat could
strongly activate the HIV LTR, although HIV Tat cannot activate the JDV
LTR. Second, the RNA sequence downstream of the transcription start
site in JDV could assume stem-loop structures similar to those of the
HIV TAR. Our deletion mapping and mutagenesis data presented in this
study showed that the first TAR stem-loop structure was critical for transactivation by JDV Tat. Transactivation of the pJD+85 and pJD+53
deletion clones demonstrated wild-type levels of Tat transactivation, suggesting that the second and third stem-loop structures between +35
and +108 may be dispensable for transactivation. However, we cannot
rule out the possibility that the distal stem-loop structures play a
role in the regulation of JDV LTR transcriptional activation in vivo.
Detailed analysis of stem-loops 2 and 3 of the JDV LTR is required in
order to further elucidate their roles in transactivation. The roles of
the additional stem-loop structures in transactivation have not been
well characterized, although they are also present in other lentivirus
LTRs, such as those of BIV, HIV-2, and SIV (3, 7, 16, 38).
Previous reports of deletion analysis of the HIV-2 LTR have shown that
in addition to the first stem-loop, the second stem-loop was also
needed for optimal activity (3). Elimination of the second
stem-loop resulted in a two- to threefold reduction in transactivation.
In contrast, deletion of the third stem-loop had no effect on
transactivation (16).
Like BIV and HIV, JDV Tat is encoded by two exons. This study focused
only on exon 1 and indicated that the protein encoded by exon 1 is a
strong transactivator analogous to HIV Tat. However, at this time we do
not know what role exon 2 may play and whether it is dispensable for
transactivation by JDV Tat in vivo. Since no infectious JDV cDNA clone
is available, it is difficult at present to elucidate the function of
JDV tat exon 2. For HIV, mutagenesis studies based on
transfection assays indicated that the second coding exon is
dispensable for transactivation (22, 26, 30, 32, 34).
However, other studies have also shown that HIV-1 tat exon 2 plays a role in the optimal activation of integrated LTRs but not of
unintegrated LTRs (23).
Besides the virus-encoded Tat, many cellular factors were reported to
be involved in basal promoter expression and transactivation. For the
JDV LTR, a deletion of the upstream sequence from nt
236 to nt
196
seemed to increase basal promoter activity about fivefold in CV-1 cells
and fourfold in FBL cells, suggesting the possibility that a negative
regulatory element exists, located between nt
196 and
236. Negative
elements have indeed been found or suggested in a number of other
lentiviruses, including EIAV, BIV, feline immunodeficiency virus, and
HIV-1 (7, 15, 31). Previous studies on the HIV LTR indicate
that the U3 region plays a very important role in TAR-dependent
transactivation (4). In the JDV LTR, several enhancer
motifs, such as NF-
B, the core enhancer element, Sp-1, and AP-4,
were identified by sequence analysis (9). Our set of U3
deletion clones containing NF-
B, SP-1, core enhancer, and AP-4
deletions have different basal promoter activities, but their abilities
to be transactivated by Tat were not affected. However, even though the
deletion clone pJD-50, in which the last predicted cellular binding
site (AP-4) was deleted, was still competent for basal expression, it
was no longer transactivated by Tat. This suggests that besides TAR,
additional elements, such as AP-4, may be required for efficient
transactivation by Tat. Additional studies are required in order to
elucidate the exact function of various elements in the U3 region that
may participate in Tat transactivation.
We conclude that JDV, a newly characterized member of the lentivirus
family, carries a potent tat gene and uses the common transactivation mechanisms adopted by other lentiviruses, including BIV
and HIV. The ability of JDV Tat to transactivate its promoter expression strongly may play an important role in its pathogenesis. The
disease course during JDV infection must involve a complex interaction
between the virus and the host immune response, as well as an interplay
between viral and cellular regulatory factors (18, 29, 34,
37). Therefore, whether a potent and ubiquitous transactivator
like JDV Tat plays a role in viral pathogenesis and acute disease
manifestation requires further investigation. Further understanding of
the regulatory mechanisms of JDV and BIV may provide useful insights
into the pathogenesis of lentiviruses.
 |
ACKNOWLEDGMENTS |
This work was supported in part by PHS grants TW00493, CA62810,
A130356, CA76958 to C.W.
We thank K. Alexander-Nielsen for help in preparation of the manuscript.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: School of
Biological Sciences, University of Nebraska, E249 Beadle Center, P.O.
Box 880666, Lincoln, NE 68588-0666. Phone: (402) 472-4550. Fax: (402) 472-8722. E-mail: cwood1{at}unl.edu.
 |
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Journal of Virology, January 1999, p. 658-666, Vol. 73, No. 1
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