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Journal of Virology, January 1999, p. 128-139, Vol. 73, No. 1
0022-538X/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Persistent Hz-1 Virus Infection in Insect Cells: Evidence for
Insertion of Viral DNA into Host Chromosomes and Viral Infection in
a Latent Status
Chi-Long
Lin,1,2,
Jin-Ching
Lee,2,3
Shih-Shun
Chen,2,3
H.
Alan
Wood,4
Ming-Liang
Li,1
Chih-Fen
Li,2 and
Yu-Chan
Chao2,*
Department of Biology, National Taiwan Normal
University,1
Institute of Molecular
Biology, Academia Sinica,2 and
Graduate
Institute of Life Sciences, National Defense Medical
Center,3 Taipei 115, Taiwan, Republic of
China, and
Boyce Thompson Institute for Plant Research,
Cornell University, Ithaca, New York 148534
Received 8 June 1998/Accepted 21 September 1998
 |
ABSTRACT |
Persistent/latent viral infections of insect cells are a prominent
though poorly understood phenomenon. In this study, the long-term
association between the Hz-1 virus and insect host cells, conventionally referred to as persistent viral infection, is described. With the aid of a newly developed fluorescent cell-labeling system, we
found that productive viral replication occurs by spontaneous viral
reactivation in fewer than 0.2% of persistently infected cell lines
over a 5-day period. Once viral reactivation takes place, the host cell
dies. The persistently infected cells contain various amounts of viral
DNA, and, in an extreme case, up to 16% of the total DNA isolated from
infected cells could be of viral origin. Both pulsed-field gel
electrophoresis and in situ hybridization experiments showed that some
of these viral DNA molecules are inserted into the host chromosomes but
that the rest of viral DNA copies are free from host chromosomes. Thus,
Hz-1 virus is the first nonretroviral insect virus known to insert its
genome into the host chromosome during the infection process. These
data also suggest that the previously described persistent infection of
Hz-1 virus in insect cells should be more accurately referred to as
latent viral infection.
 |
INTRODUCTION |
Persistent/latent viral infection is
a long-term association between a host cell and a virus. It has been
recognized to occur in insects since the last century, and depending
upon external conditions, this chronic course will often change
suddenly into an active or acute infection (36). Today,
although viral persistence has been speculated to occur with many
different viruses, little is known about the associations between these
viruses and their hosts during their long quiescent periods (9,
25, 36). In this study, Hz-1 virus (also termed Hz-1 baculovirus,
Hz-1V, and HzV-1) was used to elucidate the association and physical status of a persistent viral infection in insect host cells. Hz-1 virus
was formerly recognized as the type species of the subfamily Nudibaculoviridae of the family Baculoviridae
(43). More recently it and other nonoccluded
baculoviruses have been removed from the baculovirus family, and they
are currently unclassified (41).
The long-term association between Hz-1 virus and host cells is
generally referred to as persistent viral infection. Hz-1 virus was
identified by Granados and coworkers in 1978 (22) as a
persistent infecting baculovirus agent in the IMC-Hz-1 ovarian cell
line. It is an enveloped, nonoccluded, rod-shaped virus that contains a
double-stranded circular 228-kb DNA genome (12, 24). The virus particles are usually heterogeneous in length according to
examination by electron microscopy. Following plaque purification under
conditions of productive infections, virus particles that are
homogeneous in length can be purified (8, 12).
Electron microscopic examination of the purified homogeneous virus
particles (referred to as standard virus) indicates that the mean
particle length is 414 nm. However, after several serial, high-multiplicity passages of standard virus, the amount of defective interfering particles increases significantly (8). The
length of the defective interfering particles is variable, and they are generally shorter than standard particles. This may be due to deletions
in the standard viral genome (8, 12). Later, it was found
that persistently infected cell lines could be established from the few
viable cells remaining after acute infections (9, 12, 13,
28). Subcultures of the established persistently infected cell
lines may release infectious viruses into the medium (9, 32,
37). Nevertheless, since cells persistently infected with Hz-1
virus look normal and grow well, it is not known if virus particles are
released from a small portion of cells that were spontaneously
reactivated or from all cells but with relatively low virus yields per
cell (44).
The host range of Hz-1 virus is broad. Insect cell lines from seven
lepidopterans, including Trichoplusia ni (TN368),
Spodoptera frugiperda (IPLB-SF-212), Heliothis
zea (IPLB-1075), Mamestra brassicae, Porthetria
dispar (IPLB-65Z), Lymantria dispar (LD252Y), and
Heliothis virescens (BCIRL-HB-AM1) are susceptible to Hz-1 virus infection (44). Persistent Hz-1 virus infections have been established in three of these insect lines: H. zea,
T. ni, and S. frugiperda (12, 13, 22,
44). Once host cells are persistently infected with Hz-1 virus,
they are resistant to superinfection with the same virus
(9), and such homologous interference occurs simultaneously
with the induction of cellular apoptosis upon viral challenge
(28). Further experiments showed that apoptosis can be
blocked by the p35 gene (16) derived from
Autographa californica multiple nuclear polyhedrosis virus
(AcMNPV) and that homologous viral interference results
either from a mechanism upstream from the function of the
p35 gene or from a mechanism other than apoptosis induction
(29).
Previously, differential Hz-1 viral transcriptions under conditions of
productive and persistent infections were reported. During productive
viral infections, more than 100 transcripts are detected, whereas only
a single viral transcript, the persistence-associated transcript 1 (PAT1), has been detected during persistent viral infections
(13). This provides an opportunity for the study of the
mechanisms of differential viral gene expression during both viral
infection cycles in insect cells. Currently, the physical status and
the associations of the Hz-1 virus with persistently infected insect
cells are still largely unknown. In this study, we have developed a
novel technique to study the rate and status of viral reactivation. We
have also applied pulsed-field gel electrophoresis (PFGE) and in situ
hybridization techniques to analyze the physical status of viral
genomes in persistently infected cells. Our results clearly show that
some of the viral genomes do insert into the host chromosome, and this
suggests that persistent Hz-1 viral infection should be more accurately
referred to as latent viral infection.
 |
MATERIALS AND METHODS |
Cells and viruses.
The T. ni (TN368) and S. frugiperda (SF21AE and SF9) cell lines were maintained at 26°C
in a modified TNM-FH medium as described by Burand et al.
(8) and Chao et al. (12). Standard Hz-1 virus was
derived by plaque purification with SF21 cells (8). Persistently infected cell lines TNP1, TNP2, TNP3, SFP2, and SFP4 were
derived from serial high-multiplicity (multiplicity of infection [MOI] = 10) passages of the standard virus by the procedures of Burand and Wood (10). The TNP1, TNP2, and TNP3 cell lines
were derived from TN368 cells, and the SFP2 and SFP4 cell lines were derived from SF21AE and SF9 cells, respectively.
Assays of viral release from fluorescence-labeled persistently
infected cells.
The cell membranes of persistently infected cells
were first labeled with CellTracker CM-DiI (Molecular Probes).
CellTracker CM-DiI is a fluorescent carbocyanine dye which specifically
stains the membranes of cells without obvious diffusion to the medium or other cells, as reported by the manufacturer's instruction manual.
We found that the fluorescent dye persists on insect cells for at least
5 days without any adverse effects on cell growth or on the process of
reactivation of persistently infected viruses (data not shown).
A stock solution of CellTracker CM-DiI was resuspended in dimethyl
sulfoxide at 10 mg/ml. The loading solution was diluted in serum-free
TNM-FH medium at a concentration of 5 mM. TNP3 cells were labeled by
incubation in loading solution for 5 min at room temperature and then
for an additional 15 min at 4°C. After exposure to the dye, cells
were pelleted twice at 800 × g for 10 min and washed with serum-free
TNM-FH medium to remove residual dye.
The assays were then performed as follows. Persistently infected cells
(102 to 105 per well) were plated onto a lawn
of healthy cells (105 per well) in 24-well plates. By
calculating the number of seeded fluorescence-emitting persistently
infected cells and the final number of plaques formed in the healthy
lawn cells, the percentages of persistently infected cells which
released viruses could be calculated. That is, if any of the
virus-releasing persistently infected cells remain intact and divide, a
colony of persistently infected cells should appear in the center of
the plaque; if the cells lyse or stop growing during the release of
viruses, a single fluorescence-labeled cell should be found at the
center of the plaque.
Southern and Northern analyses.
Total cellular and viral
DNAs were purified as previously described (12, 13).
Purified DNAs were digested with restriction enzyme EcoRI
and fractionated by electrophoresis through a 0.8% agarose gel for
44 h at 3 V/cm. After ethidium bromide staining and photography
under short-wavelength illumination, the DNA was transferred to a
GeneScreen filter (Dupont), hybridized with
32P-random-primer-labeled standard viral DNA, and
autoradiographed. Northern hybridizations were performed as described
previously (13). Briefly, samples containing 3 µg of total
RNAs extracted from healthy and persistently infected cells were
treated with glyoxal and fractionated through a 1%
agarose gel. After blotting, the filter was hybridized with a
32P-random-primer-labeled probe prepared from
subfragment D of the viral EcoRI-M fragment (13).
For these experiments all of the persistently infected cells were
assayed at passages 200 to 230, except SFP4 cells were used at passage 30.
Slot hybridizations.
Total genomic DNAs were purified from
healthy (TN368 and SF21AE) and persistently infected (TNP1, TNP2, TNP3,
and SFP2) cell lines and transferred to the GeneScreen filter by using
MilliBlot (Millipore) according to the manufacturer's instructions.
The filter was hybridized with the 32P-labeled standard
viral DNA, followed by autoradiography.
The blots were then scanned with a PhosphorImager (Molecular Dynamics),
and the percentage of viral DNA content was determined
by interpolating
data into a standard curve obtained with known
amounts of viral DNA
ranging from 0.01 to 0.64 µg (see Fig.
4H).
The copy number of viral
DNA per cell was calculated as follows.
(i) Total DNA was purified from
10
5 cells and measured with a spectrophotometer (Hitachi
model U-1100).
The average amount of total DNA per cell was calculated
by dividing
the total measured DNA by 10
5 for six
independent experiments. (ii) The amount of viral DNA
per cell
(micrograms) was calculated as amount of total DNA per
cell
(micrograms) × percentage of viral DNA. (iii) The weight
of a single
viral DNA was calculated as follows: (228 × 10
3 × 660 × 10
6) (micrograms)/(6.02 × 10
23) = 2.50 × 10
10 µg. In this
equation, 228 kb is the size of viral DNA, 660 ×
10
6
is the molecular weight of paired nucleotides, and 6.02 × 10
23 is Avogadro's number. (iv) The copy number of viral
DNA was derived
as follows: total weight of viral DNA per
cell/2.50 × 10
10 µg = viral copy number per
cell.
PFGE analyses.
Healthy or persistently infected TN368 and SF
cell lines (2 × 107 cells) were mixed with equal
volumes of 1% low-melting-point agarose prepared in phosphate-buffered
saline (PBS) and cooled to 45°C. These samples were then transferred
to plug molds with a pipette and allowed to harden at 4°C. Sample
blocks were transferred to Eppendorf tubes which contained 3 to 5 volumes of 0.5 M EDTA (pH 9)-1% sarcosyl-0.5 mg of proteinase K per
ml. These blocks were digested for 1 to 2 days at 50°C with constant,
gentle shaking. After digestion with SmaI or NotI
restriction enzyme, PFGE was carried out with a CHEF-DRII pulsed-field
electrophoresis system (Bio-Rad Laboratories) in a 1% agarose gel with
0.5× TBE buffer (40 mM Tris-borate, 1 mM EDTA) at 200 V with a switch
time of 60 s for 15 h followed by a switch time of 90 s
for 8 h at 14°C. The gel was stained in water containing 0.5 µg of ethidium bromide per ml and photographed under short-wavelength
UV illumination. The gels were transferred to a GeneScreen filter (Du
Pont), hybridized with 32P-labeled standard viral DNA, and
autoradiographed. In these experiments, TNP1, TNP2, and TNP3, and SFP2
cells were assayed at passages 200 to 230, and SFP4 cells were assayed
at passage 30.
Chromosomal fluorescence in situ hybridization.
For
fluorescence in situ hybridization of viral DNA in persistently
infected cells, an RNA probe was made as follows. A 0.3-kb HincII subfragment derived from HindIII-K of
the viral genome (12) was cloned into plasmid pBluescript
KSM(+) (Stratagene Cloning Systems), and a 0.3-kb RNA probe labeled
with digoxigenin-11-UTP was produced from this plasmid by in vitro
transcription with T3 RNA polymerase (Boehringer Mannheim).
Chromosomes were prepared by a modification of the method used by
Delecluse et. al. (
18). TN368 or TNP3 cells (at passages
200 to 230) were synchronized by incubation in an excess of thymidine
(0.5 µg/ml) for 12 h. After two washings in TNM-FH medium, Colcemid
(2.5 µg/ml; Sigma) was added 1 h before harvesting. The cells
were treated with 0.06 M KCl for 6 min for swelling and were then
fixed
in ethanol-acetic acid (3:1). One drop each of cell suspension
was
allowed to fall from a height of 150 to 160 cm onto dry, 70%
ethanol-cleaned slides. After cell spreading, slides were kept
at

70°C until
hybridization.
Slides were dehydrated in ethanol of increasing concentrations (70, 80, 90, and 100%). Chromosomes were denatured by incubation
in 2× SSC
(1× SSC is 0.15 M NaCl plus 0.015 M sodium citrate)-70%
formamide
(pH 7.0) for 2 min at 70°C. After being rinsed for 2
min in 2× SSC,
slides were dehydrated as described above. Labeled
RNA probes diluted
in hybridization buffer (2× SSC, 5% dextran
sulfate, 0.2% bovine
serum albumin, and 50% formamide) were then
denatured at 75°C for 5 min and chilled on ice. The buffer containing
the RNA probes was then
placed on the slide, and both AmpliCover
Discs and AmpliCover Clips
were reassembled according to instructions
of the manufacturer
(Perkin-Elmer). For hybridization, slides
were placed at 40°C
overnight in a GeneAmp In Situ PCR System
1000 thermal cycler
(Perkin-Elmer) without PCR amplification.
After hybridization, the
slides were washed four times for 5 min
each in 2× SSC-50% formamide
at 60°C and three times for 10 min
each in 1× SSC at 42°C. For the
detection of the labeled probe,
slides were incubated with PBS
containing 0.3% Triton X-100 for
5 min and blocked for 30 min with
10% fetal bovine serum in PBS
containing 0.3% Triton X-100.
Subsequently, the slides were incubated
with 0.4 µg of
fluorescein-conjugated antidigoxigenin antibodies
per ml diluted in
0.3% Triton X-100 in PBS at room temperature
for 1 h and then
washed in three changes of 0.3% Triton X-100
in PBS. Finally, slides
were incubated in PBS containing 0.5 µg
of propidium iodide
(Molecular Probes) per ml for 5 min and washed
briefly with
PBS.
Electron microscopy.
SF9 cells at 17 h postinoculation
with Hz-1 virus as well as TN368 and TNP3 persistently infected cells
(106; at passages 200 to 230) were harvested and washed in
0.1 M sodium cacodylate buffer (pH 7.2). The cell pellets were fixed
for 1 h with a mixture of 4% paraformaldehyde and 0.2%
glutaraldehyde in 0.1 M sodium cacodylate buffer at 4°C and then
postfixed for 1 h with buffered 1% osmium tetroxide at 4°C.
After dehydration in a sequential ethanol series, the cells were
infiltrated and embedded in LR white. Ultrathin sections were stained
for 30 min in uranyl acetate and for 5 min in lead citrate. Grids were
examined with an EM902 (Zeiss) electron microscope. Productively
infected SF9 cells were also harvested at 17 h after viral
infection (MOI = 5) and treated by the same procedure described
above to show the size and morphology of viral particles under the same
electron microscopic conditions.
 |
RESULTS |
Mature, infectious viruses are produced in only a small proportion
of low-passage, persistently infected cells.
When five low-passage
(passage 30) persistently infected cell lines, TNP1, TNP2, TNP3, SFP2,
and SFP4, were analyzed, infectious viruses could be detected in the
media; however, no infectious viruses were detected in any of the
persistently infected cell lines after passage 200 (Table
1). Although newly established persistently infected cells produced viruses when seeded onto healthy
cells as described in Materials and Methods, very few plaques were
produced from all lines, ranging from 21 plaques/105 cells
for TNP3 and SFP2 cells to 210 plaques/105 cells for TNP1
cells (Table 1). These results clearly show that within 5 days, the
time needed for plaque formation, fewer than 0.2% of the persistently
infected cells tested produced virus. However, plaques were generated
by the viruses released from a small percentage of persistently
infected cell lines, suggesting that mature, infectious viruses were
indeed generated from these cells.
An interesting finding came from examination of the center of the
plaque (Fig.
1). With use of the
membrane-binding fluorescent
dye CellTracker CM-DiI system to
label and observe the persistently
infected cells, the centers of all
plaques contained a fluorescence-labeled
cell that originated from the
input of the persistently infected
cell (Fig.
1C and D). No patches of
persistently infected cells
were observed, indicating that the
persistently infected cells
died or stopped growing upon the release of
viral particles and
that the resulting progeny virus initiated a
productive infection
in the surrounding control cells. In areas where
viral plaques
did not develop, the fluorescence-labeled persistently
infected
cells were found to be surrounded by the lawn of healthy
control
cells (Fig.
1A and B), suggesting that viruses were not
released.

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FIG. 1.
Focus-forming assay with fluorescently labeled,
persistently infected cells. Fluorescence-labeled persistently infected
TNP3 cells were mixed with healthy SF21AE cells. (A and C) Photographs
taken with visible light; (B and D) photographs taken with a
combination of visible and 530-nm excitation lights. (A and B) Cells
taken from the same region, where plaques were not observed. In these
regions, both healthy lawn SF21AE cells and labeled TNP3 cells
(arrowheads) grew together without any sign of viral infection. A
higher magnification of the labeled TNP3 cell is shown in the inset. (C
and D) Plaque generated in a lawn of SF21AE cells following the release
of viral progeny from a persistently infected TNP3 cell. The TNP3 cell
(arrowhead) at the center of the plaque is also shown at a higher
magnification in the insets.
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All persistently infected cells express PAT1 and are highly
resistant to superinfection.
Total RNA was extracted from
persistently infected cells and fractionated by agarose gel
electrophoresis. After Northern blot hybridization, the PAT1 RNA,
previously reported to be the only detectable
persistence-associated transcript (11, 13), was found in all
persistently infected cells. PAT1 was expressed more strongly in TNP1
and SFP4 cells than in TNP2, TNP3, and SFP2 cells (Fig.
2). We found that the intensity of PAT1
expression was higher in newly established SFP4 cells (passage 30) than
in long-passaged persistently infected cells (passages 200 to 230).
Currently it is not known if this is because of cell line variation or
because a newly established persistently infected cell line usually
tends to more strongly express PAT1 (29).

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FIG. 2.
Detection of PAT1 expression in persistently infected
cells. Total RNA was extracted from healthy (TN368 and SF21AE),
productively infected (TN368 + Hz-1), and persistently infected
(TNP1, TNP2, TNP3, SFP2, and SFP4) cells. The expression of PAT1 was
detected by Northern hybridization with a 32P-labeled
subfragment D of the viral EcoRI-M fragment, by which PAT1
is encoded (13), as a probe.
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Previously, by using probes which can hybridize to PAT1, two viral gene
expression patterns were observed. If the cells were
persistently
infected by Hz-1 virus, PAT1 was the only virus-specific
transcript
found; however, at least two additional transcripts
other than PAT1, of
6.6 kb and >9.5 kb, were found if the cells
were productively infected
(
13) (Fig.
2, lane 2). In the present
experiment, bands
other than PAT1 were not detected in the TNP1,
TNP2, TNP3, SFP2, and
SFP4 cell lines (Fig.
2), indicating that
they were truly persistently
infected
cells.
When a host cell is persistently infected with a virus, it often
becomes resistant to challenge by the same or different viruses,
a
phenomenon known as homologous (resistant to the same virus)
or
heterologous (resistant to different viruses) interference
(
1,
2,
4,
17,
27,
38). Cells persistently infected
with Hz-1 virus were
challenged with Hz-1 virus and Ac
MNPV; the
latter is
the best-studied baculovirus (
43). The results showed
that
all cells persistently infected with Hz-1 virus were
resistant
to superinfection by the same virus. The difference in the
abilities
of parental (TN368 and SF21) and persistently infected cells
to
produce viral progeny was about 3 to 4 orders of magnitude (Fig.
3A and Table
1). However, all of these
cells persistently infected
with Hz-1 virus were not significantly
resistant to challenge
by Ac
MNPV, as determined by comparing
the viral progeny produced
in parental and persistently infected cells
(Fig.
3B and Table
1). These studies revealed that these five cell
lines consist
of typical persistently infected cells.

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FIG. 3.
Viral interference assay of parental and persistently
infected cells. Parental and persistently infected cells were
challenged with either Hz-1 virus (A) or AcMNPV (B) at an
MOI of 0.1. TN368 and SF21AE cells are healthy parental cells and serve
as controls for viral infection. At 72 h postinfection, the titers
of the viruses released into the media by the infection in two parental
and five persistently infected cell lines were assayed. Data
(means ± standard deviations) were collected from three sets of
experiments with three independent analyses of the 50% tissue culture
infective dose (TCID50).
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High DNA content and coexistence of standard viral genomes and
viral genomes with deletions in persistently infected cells.
The viral DNA contents of the persistently infected cell lines
were determined by slot blot hybridization. Total DNA was purified from
the TNP1, TNP2, TNP3, SFP2, and SFP4 cell lines. Increasing amounts of total cellular DNAs and standard viral genomic DNAs were
slot blotted onto a nylon filter and hybridized with
32P-labeled viral genomic DNA for Southern blot analysis.
The results showed that the percentages of viral DNAs in TNP1, TNP2,
TNP3, SFP2, and SFP4 cells were 5.3, 2.1, 16.5, 0.12, and 0.66%,
respectively (Fig. 4 and Table 1).

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FIG. 4.
Autoradiogram of a dot blot hybridization to calculate
the percentage of viral DNA in persistently infected cells. The
indicated amounts of total DNA extracted from two parental and five
persistently infected cell lines were dot blotted onto filters and
hybridized with 32P-labeled viral genomic DNA. The
indicated amounts of Hz-1 viral DNA were also dot blotted onto filters
and hybridized simultaneously to serve as standards for the calibration
of viral DNA in different cell samples. The two lanes for each DNA
species represent duplicate samples.
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The viral DNA contained in these five cell lines was further analyzed.
Total DNA purified from these persistently infected
cell lines
was digested with
EcoRI and fractionated through an
agarose
gel. Digested DNA was transferred to a filter and hybridized
with
a
32P-labeled viral genomic DNA probe for Southern blot
analysis.
The data (Fig.
5) show that
viral DNAs from the persistently infected
cell lines contained most of
the restriction enzyme fragments
present in the standard viral genome.
However, all of the lanes
contained additional and multimolar DNA
fragments (Fig.
5), indicating
the possibility of deletions (
9,
12) and duplications in
certain regions of the viral genome, or
integration into host
DNA, under conditions of persistent infection.

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FIG. 5.
Autoradiogram of Southern blots of viral and cellular
genomic DNAs. Total genomic DNAs of parental and persistently infected
cells were digested with the restriction enzyme EcoRI. After
fractionation through an agarose gel, genomic DNAs were blotted onto a
filter and then hybridized with a viral genomic DNA probe. Arrowheads
indicate extra fragments, and asterisks indicate multimolar bands which
were detected from the viral genome of persistently infected cells.
Hz-1, EcoRI-digested standard viral DNA.
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PFGE analysis of the physical state of the viral genome in
persistently infected cells.
DNA samples from viral particles and
different persistently infected cells were prepared in
low-gelling-temperature agarose. The DNAs were separately incubated
with and without two restriction enzymes, SmaI (for which
Hz-1 viral DNA has only one recognition site) and NotI (for
which Hz-1 viral DNA has no recognition site) (12). After
restriction digestion, the samples were loaded onto the gel. Based on
ethidium bromide staining results, the majority of viral DNAs remained
in the well prior to SmaI digestion (Figs. 6A and B, panels a, lanes
1). Following SmaI digestion, a single-species DNA of about
228 kb migrated into the gels (Fig. 6A and B, panels a, lanes 2). By
Southern hybridization analysis, the viral DNA was detected primarily
in the wells prior to SmaI digestion; however, a small
amount of viral DNA with a size of about 228 kb was detected (Fig. 6A
and B, panels b, lanes 1). This minor 228-kb viral DNA may have
resulted from nicking of some of the viral genomes during sample
preparation. After SmaI digestion, the majority of DNA isolated from viral particles was converted to 228-kb linear molecules (Figs. 6A and B, panels b, lanes 2). A portion of the viral DNA remained at the origin, presumably representing viral genomes whose
protein coats were not completely digested by proteinase K during
sample preparation and were thus trapped in the sample wells.

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FIG. 6.
PFGE analysis of the physical status of viral genomes in
persistently infected TN and SF cells. (A and C) Analysis of DNA
isolated from persistently infected TNP1, TNP2, and TNP3 cells, TN368
control cells, and Hz-1 virions with and without SmaI (A)
and NotI (C) restriction enzyme digestion. (B) Analysis of
DNA isolated from persistently infected SFP2 and SFP4 cells,
SF21AE control cells, and Hz-1 virions with and without SmaI
restriction enzyme digestion. Panels a, ethidium bromide-stained
electrophoreograms; panels b, Southern analyses of panels a probed with
32P-labeled genomic DNA of Hz-1 virus. Brackets, regions of
autoradiograms containing viral DNA sequences larger than the
linearized viral genome; arrowheads, positions of DNA molecules larger
than 1 Mb; asterisks, positions of the linearized unit viral genome.
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Total cellular DNAs from parental control and persistently infected
cell lines were subjected to PFGE analyses before and
after
SmaI digestion (Fig.
6A and B). The ethidium bromide
staining
data with
SmaI-digested TN368 (Fig.
6A, panel a,
lane 3) and undigested
SF21AE (Fig.
6B, panel a, lane 3) and
TN368 (Fig.
6C, panel a,
lane 3) DNA samples were similar to the data
from the respective
digested or undigested persistently infected cell
lines. However,
unlike the case for the persistently infected
cells, these parental
control samples did not hybridize with the
labeled viral DNA probes,
thereby providing a negative control (Fig.
6,
panels a, lanes
3).
Prior to
SmaI digestion, the total DNA samples from the
persistently infected TNP1, TNP2, TNP3, SFP2, and SFP4 cells each
exhibited two Southern hybridization signals. One was in the wells
and
the other was in the region larger than 1 Mb (Fig.
6A, panel
b, lanes
4, 6, and 8, and B, panel b, lane 7). When the persistently
infected
total DNAs were digested with
SmaI (Fig.
6A and B, panels
a), the viral signals in the wells were greatly reduced and the
signals
in the regions larger than 1 Mb disappeared. Major new
signals in the
228-kb region appeared for
SmaI-digested DNAs (Fig.
6A,
panel b, lanes 5, 7, and 9, and 6B, panel b, lane 8). Viral
signals
were weak in SFP2 cells and thus not clearly detectable
(Fig.
6B, panel
b, lane 6). Above those virus-specific bands,
multiple fragments
with sizes ranging from 300 to 900 kb were
observed (Fig.
6A, panel b,
lanes 5, 7, and 9, and B, panel b,
lane 8). These DNA fragments were
larger than the unit length
of the viral genomic DNA (228 kb) and
likely resulted from the
insertion of viral DNA into the host
genome.
The persistently infected TNP1, TNP2, and TNP3 cells were further
digested with
NotI, an enzyme which does not have a
recognition
site in the Hz-1 viral genome (
12). All of the
viral DNAs derived
from purified virus stayed in the wells, with or
without
NotI
digestion (Fig.
6C, lanes 1 and 2). Prior to
NotI digestion of
total DNA derived from persistently
infected cells, Southern hybridization
identified two bands, one in the
sample wells and the other in
a region comigrating with host
chromosomal DNA (larger than 1
Mb) (Fig.
6C, panel b, lanes 4 and 8).
These viral signals were
not found with parental cellular DNAs (Fig.
6C, panel b, lane
3). The viral signal which comigrated with the
cellular DNA was
not clearly visible with the chromosomal DNA derived
from TNP2
(Fig.
6C, panel b, lane 6), probably due to the relatively
low
viral DNA content in this cell
line.
The host chromosomal DNAs derived from persistently infected TN368
cells were then digested with
NotI. Figure
6C shows that
the
digestion was nearly complete, because the vast majority of
chromosomal
DNAs which migrated only short distances into the
gel (Fig.
6C, panel
a, lanes 4, 6, and 8) were removed to become
DNA molecules with
relatively lower molecular sizes as revealed
by ethidium bromide
staining (Fig.
6C, panel a, lanes 5, 7, and
9). Southern blot analysis
of the
NotI-digested DNA from persistently
infected cells
showed that a large proportion of the DNA containing
viral sequences
that comigrated with undigested host chromosomal
DNAs (Fig.
6C, panel
b) was digested with
NotI and migrated to
lower-molecular-size regions. However, unlike the pattern resulting
from
SmaI digestion, the major unit-length (228-kb) viral
DNA
bands were absent from the gel. Since the viral genome contains
no
recognition sites for
NotI, the existence of viral signals
in a broad region with molecular sizes ranging from about 228
kb to
>1.9 Mb indicates that these viral DNAs were more likely
to be
inserted into chromosomes of the persistently infected host
cells.
These large-DNA signals are also unlikely to be those of
free
concatemaric viral genomes, because they could be digested
by
NotI and, in addition, large circular concatemers were shown
to stay in the wells during
PFGE.
Chromosomal in situ hybridization analysis further reveals the
existence of both chromosomally inserted and free viral DNAs in
persistently infected cells.
In order to further verify the
physical status of the viral genomes in the nuclei of persistently
infected cells, chromosomal in situ hybridization was performed.
Persistently infected TNP3 cells were fluorescence in situ hybridized
by using a probe derived from the HindIII-K region of
the viral genome (12). The probe was labeled with
fluorescein isothiocyanate-conjugated antibody, which resulted in a
green color, whereas the host chromosomes were stained with propidium
iodide, which resulted in a red color. When signals of the viral genome
overlapped with those of host chromosomes, they turned yellow.
The results of in situ hybridization are shown in Fig.
7. Both green and yellow signals could be
detected in cells where host
chromosomes were not condensed, and thus
the nucleus still existed
in a well-defined rounded region (Fig.
7A,
nuclei 1 and 2). Some
green signals clearly existed outside, but close
to, the chromosomal
mass, revealing that they were likely episomal
viral genomes.
Several green or yellow signals were much larger
than the other
signals, suggesting that they were clusters of viral
genomes.
Many signals overlapped with the chromatin or chromosome
regions
and thus became yellowish. Two possibilities exist for these
yellow
signals. They either reflected viral DNAs that inserted into the
host chromosomes or were viral DNAs that located on the top or
bottom
of the chromosomes. To explore these two possibilities,
cells
with a well-spread, condensed chromosomes were examined
(Fig.
7A,
nucleus 3). Many viral genomic signals were visualized
as yellow and
coincided well with the condensed host chromosomes.
Thus,
these yellow signals likely represented inserted viral DNA
sequences in
the host chromosomes, while those visualized in green
were either
inserted DNA or episomes.

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|
FIG. 7.
Genomic analysis of Hz-1 virus by in situ hybridization
with persistently infected TNP3 cells. Genomic signals of Hz-1 virus
were detected in interphase (nuclei 1 and 2) and mitotic (nucleus 3)
cellular chromosomes. The metaphase spread was counterstained with
propidium iodide to outline chromosome morphology (red). The probe
derived from the viral genomic DNA was labeled with fluorescein
isothiocyanate-conjugated antibody, which resulted in a green color;
the overlapping of the viral signal and host chromosome produced a
yellow color. (A) Original unprocessed image. (B to E) Series of
digitized images of the host chromosomes obtained by optical sectioning
(z-axis spacing = 1 µm). Arrows indicate those viral
signals which were detectable only in middle sections (C and D) and
were thus embedded inside the host chromosomes. (F) In situ
hybridization of interphase and mitotic chromosomes of healthy TN368
cells with the same viral probe as negative controls. (G and H) In situ
hybridization of dividing TNP3 nuclei, showing equal viral DNA signals
associated with the newly divided daughter chromosomes. (G) Viral
signals only; (H) dual images of viral signals and propidium
iodide-stained nuclei.
|
|
In order to further confirm whether viral DNAs were indeed inserted
into the host genome, tightly condensed host chromosomes
during
metaphase were examined with a confocal microscope through
optical
sections (top [Fig.
7B], middle [Fig.
7C and D] and bottom
[Fig.
7E] sections). Yellow signals that appeared only in middle
sections
(Fig.
7C and D) were examined. Although in nuclei 1 and
2 some yellow
signals were observed only in the middle sections,
this was merely weak
evidence for viral insertion in the host
genomes, because these were
interphase cells and thus contained
a relatively loose chromosomal
structure. However, in the tightly
condensed nucleus 3 of a mitotic
cell, some viral signals were
observed only in the middle sections
(Fig.
7C and D), suggesting
that host chromosomes contained inserted
viral genomes. Some of
the yellow signals detectable only on the top or
bottom (Fig.
7B and E) of the sections may have reflected viral
episomes or
inserted viral DNAs which were situated at the
peripheral regions
of the
chromosomes.
In our study, viral genomic signals were found in every TNP3 and SFP2
cell. The nuclei of newly divided cells were examined,
and it was found
that fluorescent viral DNA signals were roughly
evenly distributed in
the nuclei of both newly divided daughter
cells (Fig.
7G and H),
suggesting that the replication and segregation
of the viral genome
were well controlled during cell division.
The coordinate replication
and segregation of viral genomes together
with host chromosomes thus
resulted in long-term association between
viral genomes and
persistently infected
cells.
Although all cells persistently infected with Hz-1 virus contained
multiple copies of the viral genome, virus particles were
not detected.
TNP3, the cell line with the highest viral content,
was examined by
electron microscopy and compared to control (Fig.
8A) and productively infected (Fig.
8B)
cells. Although TNP3 contained
approximately 2,400 copies of viral
genomes per cell as determined
by slot hybridization (Fig.
4 and Table
1) and fluorescent in
situ hybridization experiments showed that all of
the cells contained
multiple single or clustered viral genomic DNA
signals (Fig.
7 and data not shown), no viral particles were found in
sections
of more than 50 cells examined (Fig.
8C and D). This suggests
that most, if not all, of these abundant persistent viral DNAs
existed
as episomes.

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|
FIG. 8.
Electron microscopic view of cells productively and
persistently infected with Hz-1 virus. (A) Uninfected TN368 cell. (B)
SF9 cell productively infected with Hz-1 virus. Virus particles (V) are
indicated with arrowheads. (C and D) Persistently infected TNP3 cells
with no detectable virions. Nm, nuclear membrane; N, nucleus; Cy,
cytoplasm; Mt, mitochondria. Bars, 2.5 µm.
|
|
 |
DISCUSSION |
In this study we demonstrated that relatively newly established
cell lines persistently infected with Hz-1 virus produced virus,
whereas the production of virus ceased after 200 passages. We do not
rule out the possibility that viral reactivation may still occur after
many passages due to physiological or environmental stimulation. In
newly established cells persistently infected with Hz-1 virus,
infectious virus was produced from a minor number of cells, and these
cells died or stopped growing upon the release of viral progeny. This
is a phenomenon very similar to that of latent herpesviruses.
Viral reactivation in herpesviruses is best studied by monitoring the
appearance of the viral antigens associated with productive viral
infection (6, 23, 33, 35). The infected cells used for
experimentation are usually damaged from the fixation procedure necessary to detect viral antigens. As a result, whether the mature viruses are finally produced from particular reactivated cells and
whether specific individual cells die or survive and become virus
producers after reactivation can be elucidated only for populations of
cells, not for individual cells (5, 42). By taking advantage
of a viable long-term membrane-specific fluorescent dye, we designed a
simple and reproducible plaque assay technique to verify the nature of
viral reactivation and to examine the final fate of the cells in which
virus is reactivated. It was found that during early stages of
persistent infection, viral progeny were generated from only very small
proportions of host cells, which is comparable to what occurs with
herpesviruses (42).
Because the copy numbers of the Hz-1 viral genome are unusually high
and because the genomes contain complicated genomic deletions or
insertions (Fig. 5) (12), the physical status of viral DNA in persistently infected cells is an interesting yet difficult issue to
study by conventional molecular biological techniques. In order to
resolve these problems, PFGE techniques were applied. It has been
reported that under the conditions of PFGE, circular DNA is trapped at
the top of the gel; however, linear DNA is amenable to gel separation
(30, 39). This explains why in the present analysis of virus
particles, the intact viral DNA was trapped at the top of the gel but
migrated to about the 228-kb region after SmaI digestion.
Similar phenomena were also observed for the digestion of total genomic
DNAs of various persistently infected cells, suggesting that circular
viral DNAs may also exist in these cells. Our results show that viral
DNA is inserted into the genomes of host cells due to its comigration
with the host genome and the generation of fragments larger than the
unit length of viral DNA after the digestion with SmaI (Fig.
6A and B). NotI digestion data (Fig. 6C) provided additional
evidence for the insertion of viral DNA in the genomes of host cells.
The combined results from the digestions with SmaI and
NotI suggest that viral DNA exists as either circular or
inserted forms. The circular viral DNA molecules may either exist as an
episome or be encapsulated in the virion. However, viral particles were
not visible under the electron microscope, suggesting that if viral
particles exist during persistent viral infection, their numbers must
be low.
The physical status of the viral genome was further studied by the
fluorescent in situ hybridization of cells persistently infected with
Hz-1 virus. Results similar to those from PFGE, i.e., the existence of
extrachromosomal and inserted forms of viral genomes, were found. Hz-1
virus appears to be the first nonretroviral insect virus known to
integrate its genome into host chromosomes during the infection
process. The polyadnaviruses are unique insect viruses in that the
genomic DNAs of the viruses are carried by the genomes of parasitoid
wasps. These polyadenaviruses appear to be vertically transmitted
within wasps, apparently as an integral part of their chromosomes
(20). In mature females, the virus particles are released
from the calyx cells into the oviduct lumen, either by budding or by
cell lysis. Viruses are then injected with wasp eggs into parasitized
insects (for a review, see reference 34). However,
so far there is no evidence to suggest an active integration of the
viral genome into host chromosomes of either the parasitic wasp or the
parasitized lepidopteran larva through infection. Since the integration
of Hz-1 viral DNA into an insect host chromosome can be achieved under
laboratory conditions by viral infection, this model could serve as a
useful tool for future engineering of insects or insect cells.
It was reported by Wood and Burand (44) that one of the
persistently infected T. ni cell cultures contained
approximately 500 viral genome copies per cell. The results of our dot
blot hybridization experiments revealed that a host cell may harbor as
much as 16% of the total DNA of the viral genome, and two of the
T. ni cell lines, TNP1 and TNP3, contained very high numbers of viral copies (Table 1). Such a high viral DNA content could be
burdensome to the T. ni host cells; however, these cells
grew only slightly slower than the parental cells. Although the results of PFGE suggested that a portion of viral DNA may have been inserted into the host genome, it is still difficult to estimate how many copies
of the viral DNA are inserted into the viral genome. Even if high copy
numbers of viral DNA were inserted into the host genome, they may have
been inserted as concatemers, thus reducing the insertion site and
damage to host genomes.
Long-term association of Hz-1 virus and host cells has been referred to
as persistent infection since the discovery of this virus (9,
22). In this study, we provided some new insights regarding the
nature of persistent Hz-1 virus infection and found that persistent
infection may not be the best terminology for describing such long-term
Hz-1 virus-host associations. Persistent infections can be classified
into three categories: latent, chronic, and slow infections. Latent
infection is defined as the condition under which the virus is usually
undetectable and intermittent acute symptoms may occur (44).
Garcia-Blanco and Cullen (21) similarly proposed that
latency is a reversible nonproductive infection of cells by a
replication-competent virus. Latent infection of herpesviruses has also
been defined as a type of persistent infection in which the viral
genome is present but infectious virus is not produced except during
intermittent episodes of reactivation (5, 40). Essentially
the same definition was proposed by Ahmed (3). Similar to
the case for herpesviruses, differential viral gene expression was
observed in Hz-1 virus during productive and persistent viral
infections (13). During persistent viral infection, the
nuclear RNA PAT1 was the only virus-specific transcript that appeared
to be expressed (11). In addition, infectious Hz-1 virus was
not released during persistency unless a lytic reactivation took place
(Fig. 1 and Table 1). These and many other features demonstrated in
this study suggest that persistent infection of insect cells by Hz-1
virus is better referred to as latent viral infection.
Recently, Hughes et al. (25, 26) detected a low-level
baculovirus infection in M. brassicae insects that resembles
that of M. brassicae multiple nucleocapsid nuclear
polyhedrosis virus. The virus was found to persist in the fat body and
was detectable by PCR analysis or other sensitive indirect measures. In
their work, viral protein was detectable and infectious viruses were present, suggesting that the occult virus may remain as a persistent infection. Further study of issues such as whether such occult baculovirus infection in insects is due to continuous viral production in every cell or is due to a reactivation of viruses in only some cells, and comparison of the molecular mechanism of persistent baculovirus infection with that of Hz-1 virus infection (11, 13), may generate important information for our understanding of
persistent viral infection in insects.
Persistent/latent viral infection in insects is suspected to be a very
common phenomenon naturally occurring in the field and in long-term
laboratory colonies (9, 14, 15, 25, 28, 31, 36). Usually the
virus can be easily detected during productive infection. However,
between viral outbreaks, viruses may be harbored in insects as
persistent/latent infections and be difficult to detect (7,
19). This study provided an opportunity for us to look further
into virus-host associations in insect cells. An understanding of
persistent/latent viral infections in insects may become useful in
biological control programs. Furthermore, the Hz-1 virus has a broad
host range and is easy to manipulate for both productive and latent
infections in broad host cell lines in insects. Due to the general
similarity of latent Hz-1 virus infection to latent infection by other
viruses, i.e., differential viral gene expression, integration of viral
DNA into the host genome, reactivation, and other characteristics, Hz-1
virus may be a useful tool for comparative studies of latent viral
infections of vertebrates and invertebrates.
 |
ACKNOWLEDGMENTS |
Jin-Ching Lee and Chi-Long Lin contributed equally to this work.
We thank C. W. Chen for useful discussions, S. P. Lee for
excellent technical assistance, and W. Chang, S. Wang, and D. Platt for
critical reading of the manuscript.
This research is supported by Academia Sinica and grant NSC
88-2316-B-001-016 from the National Science Council, Taiwan, Republic of China.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Institute of
Molecular Biology, Academia Sinica, Nankang, Taipei, Taiwan 115, Republic of China. Phone: 886-2-2788-2697. Fax: 886-2-2788-2697 or
886-2-2782-6085. E-mail: mbycchao{at}ccvax.sinica.edu.tw.
Present address: Graduate Institute of Life Sciences, National
Defense Medical Center, and Institute of Molecular Biology, Academia
Sinica, Taipei 115, Taiwan, Republic of China.
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Journal of Virology, January 1999, p. 128-139, Vol. 73, No. 1
0022-538X/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
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