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Journal of Virology, September 1998, p. 7467-7475, Vol. 72, No. 9
0022-538X/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Utilization of Chimeras between Human (HM-175)
and Simian (AGM-27) Strains of Hepatitis A Virus To Study the
Molecular Basis of Virulence
Gopa
Raychaudhuri,1,*
Sugantha
Govindarajan,2
Max
Shapiro,3
Robert H.
Purcell,1 and
and Suzanne
U.
Emerson1
Laboratory of Infectious Diseases, National
Institute of Allergy and Infectious Diseases, Bethesda, Maryland
208921;
Rancho Los Amigos Hospital,
Downey, California 902422; and
Bioqual Inc., Gaithersburg, Maryland 208503
Received 29 December 1997/Accepted 15 June 1998
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ABSTRACT |
Chimeras between human (HM-175) and simian (AGM-27) strains of
hepatitis A virus (HAV) were constructed to evaluate the effect of the
2C gene of AGM-27 on HAV replication in cell culture and virulence in
tamarins (Saguinus mystax) and chimpanzees (Pan
troglodytes). Kinetic studies and radioimmunofocus assays
demonstrated that replacement of the 2C gene of HAV/7, a cell
culture-adapted strain of HM-175, with that of AGM-27 drastically
reduced the ability of the virus to replicate in cultured cells.
Intragenic chimeras containing AGM-27 sequences in either the 5' or 3'
half of the 2C gene replicated in cell culture at an intermediate
level. Whereas HAV/7 is attenuated for tamarins, a chimera containing
the simian virus 2C gene in the HAV/7 background was virulent in
tamarins, demonstrating that the simian virus 2C gene alone can confer
the phenotype of virulence to an otherwise attenuated virus. Clusters of AGM-27-specific residues near both ends of the 2C protein were required for virulence since a chimera containing AGM-27 sequences in
the carboxy-terminal half of 2C was partially attenuated for tamarins
while one containing AGM-27 sequences only in the amino-terminal half
of 2C was even more attenuated. Chimeras containing either the entire
or only the 3' half of the simian virus 2C gene in the HAV/7 background
were attenuated for chimpanzees.
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INTRODUCTION |
Hepatitis A virus (HAV) is a
picornavirus with a ~7.5-kb positive-strand RNA genome and is the
sole member of the Hepatovirus genus (15). The
clinical manifestations of HAV infection in humans can vary greatly,
ranging from asymptomatic infection, commonly seen in young children,
to fulminant hepatitis, which in some cases can result in death
(39). HAV is transmitted primarily by the fecal-oral route,
and epidemics are common in regions where sanitation conditions are
poor.
The single long open reading frame of the HAV genome encodes a large
polyprotein which is cleaved by the viral protease to produce three to
four structural proteins (encoded by the P1 region) and seven
nonstructural proteins (encoded by the P2 and P3 regions). Certain
mutations in the 2B and 2C genes of the P2 region increase replication
of the HM-175 strain in cell culture (12, 44). Although the
function of either protein has not been definitively demonstrated, the
presence of a nucleoside triphosphate (NTP)-binding motif within the 2C
protein has led to speculation that it may function as a helicase.
HAVs isolated to date have been divided into seven genotypes based on
the criterion of 15 to 20% nucleotide sequence diversity over a
168-base segment at the VP1/2A junction (37). All HAV strains isolated from humans are represented in genotypes I, II, III,
and VII. The majority (80%) of the human isolates of HAV are
categorized as genotype I, of which HM-175 is a prototype strain.
Genotypes IV, V, and VI are each represented by a single isolate of
simian origin (CY-145, AGM-27, and JM-55/CY-55, respectively) (37). Despite the genetic variability among genotypes, there is evidence for only a single HAV serotype (23, 14).
There is considerable evidence that human strains of HAV can infect
nonhuman primates (9, 10, 22, 28). However, whether there
are HAV strains that have monkeys as their primary host has not yet
been clearly established. HAV or a hepatitis A-like virus is endemic
among Malaysian cynomolgus monkeys (3). The viruses
infecting these monkeys most likely represent true simian strains since
the animals were captured in remote regions of Malaysia and were
unlikely to have been infected through contact with humans. Similarly,
baboons captured near a sparsely inhabited village in South Africa were
positive for anti-HAV antibodies of the immunoglobulin G (IgG) class
when they were first tested 2 weeks after capture, again suggesting
that these animals had been infected by HAV in nature (41).
The single example of the AGM-27 strain of HAV was isolated from a
naturally infected, clinically ill African green monkey (Cercopithecus aethiops) during the acute phase of infection
(2). The nucleotide sequence differs from that of the
prototype human strain, HM-175 (19), by 17%. This
corresponds to 7% divergence in amino acid sequence, with the
nonstructural proteins being more highly divergent (9 and 8% for P2
and P3 proteins, respectively) than the structural proteins (3%). The
significant divergence of AGM-27 from all other HAV strains
(37) and the failure to isolate viruses of the same genotype
from humans suggest that AGM-27 may represent a true simian strain of
HAV.
There are distinct differences in the biological properties of HM-175
and AGM-27. Wild-type AGM-27 grows in primate cell cultures significantly better than does wild-type HM-175 but not as well as
HAV/7, a cell culture-adapted variant of HM-175 (43).
Experimental infections of primates have demonstrated that both
wild-type HM-175 and AGM-27 are virulent in tamarins (Saguinus
mystax) but differ markedly in virulence for chimpanzees
(Pan troglodytes). Wild-type HM-175 is virulent in
chimpanzees and causes acute hepatitis, whereas AGM-27 is highly
attenuated in chimpanzees and infection does not cause hepatitis but
does confer protective immunity to chimpanzees subsequently challenged
with virulent HM-175 virus (14).
Identifying the genetic parameters that are responsible for HAV
pathogenicity is important for understanding the mechanism(s) of HAV
pathogenesis and is a critical step toward development of a live
attenuated vaccine for HAV. Several inactivated vaccines which
effectively protect individuals against HAV infection are currently
available (26). However, an effort to generate a live attenuated vaccine is justified because the inactivated vaccines have
the limitation that multiple doses are required for effective immunization and it is not known yet if protection conferred by the
inactivated vaccines is comparable to that following natural infection.
A live vaccine could have the advantage of inducing lifelong immunity
following administration of only a single dose. Such a vaccine may also
be less expensive to administer, making it more available for use,
especially in developing countries. The existence of only one serotype
for HAV greatly enhances the prospect of using a single vaccine to
protect individuals against infection with all HAV strains.
Adaptation of HAV for efficient replication in cell culture has
resulted in attenuation of the virus for primates (5, 7, 21)
and humans (40). The MRC-5-adapted virus, for example, replicates efficiently in MRC-5 cells but fails to replicate to detectable levels in humans (35a, 40). A viable live vaccine candidate must achieve a balance between efficient replication of the
virus in cell culture and a limited infection in humans, one that is
sufficient to elicit an immune response without causing illness.
In this study, we have utilized chimeras between HM-175 and AGM-27, two
HAV strains with distinct molecular and biological properties, to
better understand the genetic basis for HAV replication in cell culture
and viral pathogenicity in primates. Our initial studies have focused
on the 2C gene since 2C gene mutations have previously been shown to be
important for enhanced replication of the HM-175 strain in cell culture
(12, 44). To evaluate whether importance of the 2C sequence
for replication is unique to the cell culture-adapted variants of
HM-175 or whether this is a characteristic of 2C in other HAV strains,
chimeras between HM-175 and AGM-27, two of the most divergent HAV
strains that have been identified (37), were analyzed for
their replication efficiency in cell culture. In addition, these
simian-human chimeras were utilized to evaluate the importance of the
2C gene for virulence of HAV. Information gained from these studies may
have practical implications for vaccine development.
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MATERIALS AND METHODS |
Cells.
A subclone of the FRhK-4 cell line, 11-1, was used in
these studies because replication of HAV in this cloned cell line is more efficient than in the parental cell line (16). Cells
were maintained in Dulbecco's modified Eagle medium (DMEM)
supplemented with 10% fetal calf serum, glutamine, nonessential amino
acids, 50 µg of gentamicin sulfate per ml, and 2.5 µg of
amphotericin B (Fungizone) per ml (10% DMEM).
Reverse transcription, PCR, and DNA sequencing.
An AGM-27
virus stock consisting of 10% (wt/vol) African green monkey liver
homogenate in phosphate-buffered saline (pH 7.2) (43) was
the source of viral RNA for cloning of the cDNA fragments generated by
reverse transcription (RT)-PCR. RNA was isolated from 5 to 10 µl of
the AGM-27 liver homogenate by either the guanidinium thiocyanate
extraction procedure (4) or with Trizol reagent (Gibco-BRL,
Bethesda, Md.) in accordance with the manufacturer's instructions.
Glycogen (20 µg; Boehringer Mannheim, Indianapolis, Ind.) was added
as a carrier prior to precipitation with isopropanol. The RNA was
resuspended in 10 µl of sterile water to which 1 µl of a 10 µM
stock of reverse primer was added. The solution was heated at 65°C
for 3 min and cooled at room temperature for 5 min. The RT reaction was
performed in a final volume of 20 µl in a reaction mixture consisting
of 10 mM Tris-HCl (pH 8.4), 50 mM KCl, 2.5 mM MgCl2, 40 U
of RNasin (Promega Biotech, Madison, Wis.), 1 mM each deoxynucleoside
triphosphate (dNTP), and 8 U of avian myeloblastosis virus reverse
transcriptase (Promega Biotech). After synthesis of cDNA at 42°C for
60 min, PCR amplification was performed in a total volume of 100 µl
of 10 mM Tris-HCl (pH 8.4), 50 mM KCl, 2.5 mM MgCl2, 0.2 mM
each dNTP, 4 U of Taq polymerase (Perkin-Elmer Corp,
Norwalk, Conn.), and 0.5 mM each forward and reverse primer. When
necessary, silent mutations were incorporated into the primers to
generate restriction enzyme sites required for subsequent cloning
steps. The PCR consisted of 35 cycles of 1 min at 94°C, 1 min at
45°C, and 1 to 3 min at 72°C followed by a single cycle at 72°C
for 10 min. A second round of PCR with nested primers was performed if
necessary. The PCR products were purified from low-melting-point
agarose gels by phenol extraction or with a gel purification kit
(Qiagen, Chatsworth, Calif.).
All PCR-generated fragments or clones containing PCR-generated DNA were
sequenced by using either Sequenase (United States Biochemical Corp.,
Cleveland, Ohio) in accordance with manufacturer's instructions or the
Applied Biosystems 373A automated DNA sequencer by a modified Sanger
method.
cDNA clones.
Molecular cloning of cDNAs representing the
HAV/7 genome has been reported previously (6). All
nucleotide number assignments herein are based on the genomic map of
wild-type HM-175 (8). Plasmids encoding chimeric viruses
were generated by cloning cDNA fragments from AGM-27 into the
infectious pHAV/7 plasmid (7) which had been modified to
include a PpuMI site at nucleotides (nt) 3987 to 3993 and an
AflII site at nt 4353 to 4358. An AflII site at
this position is present in the AGM-27 consensus sequence. HAV/7 has a
naturally occurring EcoRI site at nt 4977 to 4982 near the
3' end of the gene. Since this site was not present in the AGM-27
consensus sequence, an EcoRI site was engineered at the
analogous position in the AGM-27 gene by primer-directed mutagenesis with PCR. A chimera containing most of the AGM-27 2C gene in the background of the HAV/7 genome was constructed (Fig.
1). This pGR2 chimera contained the
AGM-27 consensus sequence from nt 3996 to nt 4981 in an HAV/7
background. The 2C gene of pGR2 had three nucleotide differences from
the AGM-27 consensus sequence at positions 4211 (C-to-T transition),
4280 (G-to-A transition), and 4397 (T-to-C transition), but these
differences did not change the amino acid sequence. Because the
EcoRI site at nt 4977 to 4982 was used for cloning, the pGR2
plasmid contained a glutamic acid residue, which is present in HAV/7 at
amino acid position 331 in 2C, instead of a lysine residue, which is
present in the AGM-27 consensus sequence.

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FIG. 1.
Genomic structure of full-length cDNA clones of chimeras
consisting of HAV/7 (white bars) and AGM-27 (grey bars) sequences.
Positions of unique restriction sites used in cloning are indicated.
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The differences in predicted amino acids between the HAV/7 and AGM-27
2C proteins are clustered at the amino and carboxy termini of the
protein, whereas the middle third of the protein is highly conserved
(Fig. 2). The 2C gene was subdivided, and
intragenic chimeras between the simian and human 2C genes were
generated to evaluate the effect of separating the two clusters of
amino acid residues that differ between HAV/7 and AGM-27. Intragenic chimeras contained a heterologous PpuMI-AflII or
AflII-EcoRI fragment (Fig. 1).

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FIG. 2.
Diagram showing the predicted amino acid differences
between the cell culture-adapted variant, HAV/7, and AGM-27 in the 2C
protein. Bars represent predicted amino acid differences between AGM-27
and HAV/7. Asterisks indicate sites that are critical for growth of
HM-175 in cell culture (corresponding to mutations at nt 4087 and 4222)
(12). Arrows indicate the two conserved putative NTP-binding
motifs.
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Establishment of virus stocks.
All full-length cDNAs were
cloned in pGEM1 (Promega Biotech). In vitro transcription and
transfection assays were performed as described previously by Emerson
et al. (13) with a few modifications. Briefly, HAV RNA
transcribed by Sp6 polymerase (Promega Biotech) from 5 µg of cDNA
linearized with HaeII was transfected without purification
into 11-1 cells. Transfection of cells was accomplished by the
DEAE-dextran method. One week after transfection, half of the cells in
each flask were passaged to coverslips and the fraction of cells that
contained viral antigen was estimated by immunofluorescence microscopy
(13). Transfected cells were harvested by trypsinization
when >80% of the cells were infected. Viruses were released from the
harvested cells by at least three cycles of freeze-thawing to generate
the working virus stocks.
RIFA.
A radioimmunofocus assay (RIFA) was used to determine
focus size and to quantify virus titers. The RIFA was a modification of
that described by Lemon et al. (24) and Anderson et al.
(1) and was essentially performed as previously described
(16). Cells (11-1) were grown on round 25-mm-diameter
Thermolux coverslips fixed to the bottom of each well in six-well
plates. Virus was adsorbed to cells for 2 to 4 h at 34.5°C in a
CO2 incubator. Infected cells were overlaid with 5 ml of
0.5% agarose medium and incubated at 34.5°C in a CO2
incubator for 10 or 12 days. When cells were infected with virus from
stool samples, G418 sulfate (Gibco-BRL) was added at a final
concentration of 0.5 mg/ml to the sample diluent and agarose overlay
solutions. Cells were fixed with acetone and either processed
immediately or stored at
20°C. Viral antigen was detected with a
primary antibody consisting of chimpanzee hyperimmune serum
(11a) and a secondary antibody of 125I-labelled
sheep anti-human IgG F(ab')2 fragment (Amersham
Corporation, Arlington Heights, Ill.). Foci were visualized by
autoradiography.
Growth curves.
Growth curve assays were performed to
evaluate the relative rates of viral replication in 11-1 cells. Cell
monolayers which were >80% confluent in 96-well plates (Falcon) were
infected with 0.2 ml of virus diluted in 10% DMEM at a multiplicity of
infection of 6 radioimmunofocus-forming units (RFU) per cell. Cells
were incubated with virus for 2 to 4 h at 34.5°C in a
CO2 incubator, after which the cells were washed four times
with 10% DMEM and overlaid with 0.2 ml of 10% DMEM. At various times,
the medium, which contained virus released from the cells, was removed
and the volume was adjusted to 0.3 ml with 10% DMEM. The adherent cells in the wells were washed once with 0.2 ml of trypsin solution at
room temperature and were subsequently incubated with 0.1 ml of trypsin
solution at 34.5°C until the cells rounded up. The trypsinized cells
were then harvested by vigorous pipetting and combined with the medium
that had been previously removed. The total virus sample (0.4 ml) was
stored at
80°C. Cells were lysed by at least three cycles of
freeze-thawing, and virus was quantified either by slot blot
hybridization or by RIFA. Either HAV/7 or a modified clone of HAV/7
containing a silent mutation was used as a standard for estimation of
optimal replication in cell culture. Since a difference was not
detected in the replication properties of these two viruses, they were
used interchangeably and, for simplicity, are always referred to as
HAV/7 in this report.
Slot blot hybridization.
RNA was isolated from cell cultures
with Trizol reagent (Gibco-BRL) in accordance with the manufacturer's
instructions with the following modifications. A 130-µl aliquot of
sample was extracted with an equal volume of Trizol. After the 15-min
centrifugation step, 100 µl of the aqueous phase was removed and
added to 320 µl of a 1:1 solution of 10× SSC (1.5 M NaCl and 0.15 M
sodium citrate [pH 7.0]) and formaldehyde. Viral RNA was quantified
by slot blot analysis by using a negative-strand
32P-labelled RNA probe spanning the complete HAV genome.
Hybridization was at 50°C for at least 16 h. Blots were washed
three times for 30 min each with 2× SSPE (1× SSPE is 10 mM sodium
phosphate, 0.15 M NaCl, 1 mM EDTA [pH 7.4]) with 0.1% sodium dodecyl
sulfate at room temperature and once with 0.1× SSPE-0.1% sodium
dodecyl sulfate at 64°C for 1 h. Autoradiography was performed,
and the viral RNA from each time point in the growth curve was analyzed
with a Deskscan II scanner (Hewlett-Packard) and a Macintosh computer, using the public domain NIH Image program (developed at the U.S. National Institutes of Health and available on the Internet at http://rsb.info.nih.gov/nih-image/). At least two or more sister clones
were assayed for each virus construct.
Virulence studies with tamarins and chimpanzees.
Each of two
tamarins was inoculated intravenously with approximately
103.8 tissue culture infectious doses (TCID) of GR2 virus
or 104.8 TCID of the GR3 or GR4 virus in a 0.5-ml volume of
inoculum. Four chimpanzees were inoculated (two each) with
105 TCID of either GR2 or GR4 virus in a 0.5-ml volume of
inoculum. The number of TCID in the inoculum was determined by RIFA.
Blood samples were collected and percutaneous biopsies of the liver were performed weekly on each animal for at least 2 weeks before and 16 weeks after inoculation with virus. The blood samples were analyzed for
seroconversion to anti-HAV positivity with a commercial assay (Abbott
Laboratories, North Chicago, Ill.) and for serum alanine
aminotransferase (ALT) and isocitrate dehydrogenase (ICD) levels by
standard techniques (Metpath, Rockville, Md.). Serum liver enzyme
values were considered to be above background levels if the value was
greater than two times the geometric mean preinoculation value.
Histopathology was determined under code and scored on a scale of 1 (mild hepatitis) to 4 (severe hepatitis).
Stool samples were analyzed for the presence of excreted virus by
RT-PCR. Briefly, a 10% (wt/vol) suspension of stool in 10 mM Tris (pH
7.0) and 0.135 M NaCl was prepared in a stomacher and clarified by
low-speed centrifugation to remove large particulate matter. Viral RNA
was extracted from a 100-µl aliquot of clarified sample with 1 ml of
Trizol reagent in accordance with the manufacturer's instructions, and
RT-PCR was performed. The amplified DNA was purified with a PCR
fragment purification kit (Qiagen) and sequenced. The housing,
maintenance, and care of the animals met or exceeded all requirements
for primate husbandry.
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RESULTS |
Chimeras between AGM-27 and HAV/7.
Transcripts from
chimeras containing sequences from the simian virus 2C gene in the
HAV/7 background (Fig. 1) were infectious when transfected into 11-1 cells (data not shown). Of the 31 amino acid differences between the 2C
proteins of AGM-27 and HAV/7, 30 are present in GR2. Since an
EcoRI site near the 3' end of the 2C gene was utilized in
constructing the chimeras, they lacked the last AGM-27-specific residue
at position 331 of the 2C protein because this residue is encoded just
downstream of the restriction site. The GR3 and GR4 chimeras differ
from HAV/7 by 17 and 13 amino acid residues, which are clustered near
the amino and carboxy termini of 2C, respectively.
RIFA and growth curve analyses.
RIFA can be used to
evaluate the relative abilities of HAV mutants to replicate in vitro.
The cell culture-adapted mutant of HM-175 virus replicated well
in cell culture and formed large foci (Fig.
3, HAV/7). AGM-27, which is a wild-type
virus, replicated in cell culture but had a small-focus phenotype (Fig.
3). Foci formed by wild-type HM-175 were too small to visualize by
using this assay (11a). Replacement of the 2C gene of HAV/7
with AGM-27 sequences (chimera GR2) drastically reduced the ability of
the virus to replicate (Fig. 3), confirming the importance of 2C
sequence for HAV/7 replication in cell culture and suggesting that the 2C sequence may be important for replication of most if not all HAV
strains. The intragenic 2C chimeras GR3 and GR4 formed foci of
intermediate size (Fig. 3).

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FIG. 3.
Comparison of the sizes of the foci formed by HAV/7,
AGM-27, and chimeras that contain AGM-27 2C sequences in the HAV/7
background. GR2, GR3, and GR4 chimeras encompass the AGM-27 sequence
from nt 3996 to 4981, 3996 to 4357, and 4354 to 4981, respectively.
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Kinetic studies were conducted to quantify the relative replication
efficiencies of these viruses. Cells were infected with a high virus
multiplicity (6 RFU/cell) to ensure that almost every cell was
infected. An increase in virus titer over time was therefore a measure
of virus replication. RNA was extracted from samples harvested at each
time point and quantified by slot blot hybridization and densitometry.
Comparison of HAV/7 replication with that of a chimera containing the
simian virus 2C gene in this same background (GR2) showed that the
simian virus 2C sequences greatly reduced the ability of the
virus to replicate (Fig. 4). This result
was consistent with the small-focus phenotype for GR2 shown previously (Fig. 3). Intragenic chimeras containing AGM-27 sequences in either half of 2C (GR3 and GR4) exhibited an intermediate replication phenotype (Fig. 4), since they replicated less well than HAV/7 but
better than the chimera containing the entire 2C sequence of AGM-27
(GR2). The relative rates of replication of these viruses were also
quantified by RIFA, which measures the number of infectious virus
particles at each time point. The relative replication rates of HAV/7
and the 2C chimeras as measured by RIFA were similar to those observed
by slot blot analysis (data not shown). There consistently was good
correlation between the results obtained by the two assays. These data
demonstrated that the two amino acid residue clusters that are unique
to AGM-27 have a negative effect on HAV/7 replication and that these
effects are additive. Replication of the GR4 chimera was especially
sensitive to the status of the cells, and GR4 accumulated at a rate
slightly greater or less than that of the GR3 chimera in different
experiments but it always replicated better than did GR2 and
significantly less well than did HAV/7. The results of the RIFA and
kinetic assays demonstrated that, in each case, substitution of simian 2C sequences into the HAV/7 background inhibited replication of the
virus in cell culture.

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FIG. 4.
Growth curves of simian-human chimeras GR2, GR3, and GR4
and the cell culture-adapted human virus, HAV/7, as measured by
hybridization. Viral RNA was quantified by slot blot hybridization
followed by autoradiography and densitometry analysis. The 2C gene is
demarcated in the bar diagram identifying the virus genotype and is not
drawn to scale. AGM-27 sequences are shaded in grey. O.D., optical
density.
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Virulence studies with tamarins.
AGM-27 is virulent in
tamarins (14), while HAV/7 is attenuated (5). The
GR2 chimeric virus was inoculated intravenously into two tamarins, and
levels of liver enzymes in serum, antibody titers, liver pathology, and
levels of virus excretion in the feces were evaluated. The GR2 chimera
was virulent in tamarins, causing seroconversion to anti-HAV positivity
by week 5 after inoculation and significant increases in serum liver
enzyme levels (Fig. 5A and B). The
pattern of ALT levels (data not shown) during the course of infection
was similar to that of ICD. Liver histology was indicative of mild (1+)
to moderate (2+) hepatitis 6 to 9 weeks after inoculation in one animal
(Fig. 5A) and mild (1+) to moderately severe (3+) hepatitis 5 to 8 weeks after inoculation in the second animal (Fig. 5B). In both
animals, the most severe liver pathology was observed coincident
with the peak in serum liver enzyme levels. The peak titers of
anti-HAV antibodies elicited in response to infection with the GR2
chimera were 1:16,000 and 1:32,000 in S. mystax animals 782 and 783, respectively (Table 1).
Virus-specific RT-PCR amplification of fecal samples showed that the
highest level of virus was excreted just prior to and concurrent with
the peak serum liver enzyme level and seroconversion for HAV in
S. mystax animal 782 (Fig. 5A). HAV was detected in the
feces of S. mystax animal 783 for 14 of the 16 weeks studied and at significant levels for 10 of these weeks (Fig. 5B). Stool samples that were positive for HAV after one round of PCR were pooled,
and the virus titer was determined in duplicate by RIFA. The mean peak
levels of virus in the pooled stool samples were 1.7 × 106 and 1.4 × 106 RFU/g of feces for
S. mystax animals 782 and 783, respectively. Partial
sequence analyses of viral genomes, amplified from stool samples, from
regions of the 2B and 2C genes were performed to confirm that the
excreted virus contained 2B sequence derived from HAV/7 and 2C sequence
derived from AGM-27, as was expected for the GR2 chimera. These results
show that the 2C gene of AGM-27 alone can confer the phenotype of
virulence for tamarins to an otherwise attenuated virus (HAV/7).

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FIG. 5.
Biochemical (ICD), serological (anti-HAV), and
histopathological (0 to 4+) responses and virus excretion in feces
(PCR) of tamarins inoculated with simian-human chimeras GR2 (A and B),
GR3 (C and D), and GR4 (E and F). PCR symbols: , stool samples
positive for HAV after one round of PCR; , stool samples positive
for HAV only after two rounds of PCR; , stool samples negative for
HAV even after two rounds of PCR. Histopathology scores: 1+, mild
hepatitis; 2+, mild to moderate hepatitis; 3+, moderately severe
hepatitis; 4+, severe hepatitis. The preinoculation ICD value is the
geometric mean of three values prior to inoculation. NA, liver sample
not available. Mystax, S. mystax animal.
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Two tamarins were inoculated with the GR3 chimera, which contains
AGM-27-specific sequences at the amino-terminal end of 2C. A
significant increase in serum liver enzyme levels was not detected in
either animal, and histologic signs of hepatitis were either absent
(Fig. 5C) or minimal (Fig. 5D). One animal (S. mystax animal 808) developed anti-HAV antibodies 7 weeks after inoculation, and the
peak anti-HAV titer was 1:200 (Fig. 5C; Table 1). The second animal
(S. mystax animal 790) did not seroconvert until week 15 and
attained a peak anti-HAV titer of 1:1,600 (Fig. 5D; Table 1). Only
minimal levels of excreted virus were detected in the feces of either
animal inoculated with the GR3 chimera, indicating that viral
replication was greatly reduced in tamarins infected with this chimera
relative to those infected with GR2 (Fig. 5C and D; Table 1).
Therefore, the GR3 chimera was attenuated for tamarins.
The GR4 intragenic chimera was also tested in two tamarins. One
animal (S. mystax animal 799) infected with this chimera had a slight increase in serum liver enzyme levels concurrent with seroconversion to anti-HAV positivity 6 weeks after inoculation (Fig.
5E), and the serum liver enzyme levels remained elevated for 2 weeks
(weeks 6 and 7). The peak anti-HAV titer of 1:8,000 was relatively high
(Table 1). Analysis by RT-PCR showed that virus was excreted in the
feces of S. mystax animal 799 for the entire 16-week
duration of the study and that the highest levels of excreted
virus occurred between weeks 4 and 9 inclusive (Fig. 5E). Liver
histology showed signs of mild to moderate hepatitis 7 to 10 weeks
after inoculation (Fig. 5E), indicating that this chimera was only
partially attenuated for tamarins. The second tamarin (S. mystax animal 818) infected with this chimera experienced a milder
infection. It seroconverted 6 weeks after inoculation but had neither
an increase in serum liver enzyme levels nor significant histopathology
(mild hepatitis was observed only in week 8 postinoculation) (Fig. 5F).
The peak level of excreted virus in S. mystax animal 818 was
100-fold less than that in S. mystax animal 799, and the peak anti-HAV antibody titer detected in the serum of S. mystax animal 818 was only 1:1,600 (Table 1). Although both
tamarins infected with GR4 seroconverted to anti-HAV positivity at the same time (week 6) and showed only minimal (S. mystax animal
799) or no (S. mystax animal 818) increase in serum liver
enzyme levels, they differed in the extent and duration of liver
pathology that was observed, the levels of virus excreted in the feces,
and the titers of anti-HAV antibodies that were produced (Fig. 5E and F; Table 1). The difference between the two animals is not unusual in
studies of this kind and is due to biological variation among outbred
animals. However, the higher level of virus excretion and the shorter
time to seroconversion of both animals infected with GR4, relative to
those infected with GR3, indicated that GR4 replicated better in
tamarins than did GR3. Therefore, the GR4 chimera is only partially
attenuated in tamarins.
Virulence of the GR2 and GR4 chimeras in chimpanzees.
Two chimpanzees each, inoculated with either the GR2 or the GR4
chimera, did not display biochemical or histological changes associated
with hepatitis (Fig. 6A to D). Animals
inoculated with the GR2 chimera seroconverted at week 8 (chimp 1545)
and week 17 (chimp 1547) after inoculation, and the peak anti-HAV
antibody titers elicited in the two animals were 1:200 and 1:40,
respectively (Table 2). Excreted virus
was detected in the feces of both chimpanzees infected with the GR2
chimera although the levels of virus present in the stool samples were
low (<400 RFU/g of feces) and the duration of excretion was short
(Fig. 6A and B; Table 2). Infection of chimpanzees with GR4 resulted in
seroconversion at week 8 (chimp 1564) and week 10 (chimp 1558)
postinoculation with peak anti-HAV antibody titers of 1:40 and 1:800,
respectively. RT-PCR amplification of fecal samples failed to detect
virus in stool samples from chimp 1564, indicating that only very low
levels of virus, if any, were being excreted. Virus that is present in
levels lower than 10 RFU/g of feces is below the limit of the
sensitivity of the RT-PCR analysis. Virus was detected in the feces of
chimp 1558 just prior to and at the time of seroconversion (Fig. 6D). For comparison, chimpanzees inoculated with at least 80-fold more wild-type AGM-27 virus seroconverted 6 weeks after infection and had
peak anti-HAV titers of <1:20 and 1:200 (14). Like the
parent strains HAV/7 and AGM-27, both GR2 and GR4 were attenuated
for chimpanzees.

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|
FIG. 6.
Biochemical (ALT), serological (anti-HAV), and
histopathological (0 to 4+) responses and virus excretion in feces
(PCR) of chimpanzees inoculated with simian-human chimeras GR2 (A and
B) and GR4 (C and D). See legend to Fig. 5 for symbols and details.
|
|
 |
DISCUSSION |
There is considerable evidence that adaptation of HAV to replicate
efficiently in cell culture is associated with increased attenuation
for several species of primates (5, 21, 33, 35) and for
humans (27, 34, 40). This suggests that the two biological
properties replication in cell culture and virulence in primates share
at least some important genetic determinants. We have utilized chimeras
between HAV/7 and AGM-27, two HAV strains with distinctly different
molecular and biological properties, to identify genetic factors that
contribute to HAV replication in vitro and to HAV virulence in vivo.
Information gained from these studies will be applied toward
development of a live vaccine for HAV.
Replacement of the HAV/7 2C gene with that of AGM-27 dramatically
reduced the ability of the virus to replicate in cell culture, as shown
by reduced focus size (Fig. 3) and by lower yields of both viral RNA
(Fig. 4) and infectious virus (data not shown) in growth curve
analyses. These results confirm and expand the previous studies
demonstrating the significant contribution of 2C gene mutations to
replication of the HM-175 strain of HAV in cell culture (12, 36,
44) and suggest that the 2C protein may have a central role in
replication of most if not all HAV strains in cell culture.
The function of the 2C protein has not yet been definitely demonstrated
for HAV. The amino acid differences in 2C between HM-175 and AGM-27 are
clustered at the amino and carboxy-terminal ends, while the central
region of the protein is highly conserved (only 1 amino acid difference
between residues 105 and 261, inclusive, of AGM-27 and HAV/7 [Fig. 2]
and no differences in this region between AGM-27 and wild-type HM-175).
These comparisons suggested that sequences within the central region
may encode important structures necessary for 2C function.
Alternatively, it seemed possible that sequences throughout the protein
may be important for function and that the sequences at the ends may
have coevolved in each virus so that 2C function was maintained even
though the sequences had diverged. The two clusters of amino acid
sequence differences between the two strains were separated in the
intragenic chimeras, GR3 and GR4, resulting in viruses that were still
viable (Fig. 3 and 4). The intragenic chimeras replicated at levels
intermediate between HAV/7 and the chimera containing the entire 2C
gene of AGM-27 (Fig. 3 and 4). These observations are consistent with the idea that the conserved central region of 2C was responsible for
the critical function of this protein but that the sequences at the
amino- and carboxy-terminal ends contributed to the efficiency of this
function. The central region contains an NTP-binding motif (18), a structure that is present in numerous
positive-strand RNA viruses (17), including poliovirus, a
distantly related picornavirus. The poliovirus 2C protein has been
shown to have GTPase and ATPase activities (30, 38) that
likely provide energy for one or more processes required for virus
replication. Mutation of conserved residues in the NTP-binding motif of
the poliovirus 2C protein severely inhibits virus replication, thus greatly compromising virus viability (29, 42). The absolute conservation of the NTP-binding motif between two very different HAV
strains (HM-175 and AGM-27) suggests that such an activity may also be
functionally important for the role of 2C in HAV replication.
It is difficult at this time to ascertain whether the reduced
replication ability of the GR2 chimera in cell culture is a direct
result of diminished 2C function. It is plausible that replacement of a
large number of amino acid residues at the amino and carboxy termini of
HAV/7 2C with simian HAV sequences may have sufficiently altered the
secondary or tertiary structure of the polyprotein, thereby interfering
with the efficiency of a necessary viral function such as polyprotein
processing. Alternatively, the structural properties of the RNA genome
itself may have been altered, which might result in decreased stability
or less efficient packaging of the RNA genome. Such effects may be
responsible for, or at least contribute to, the diminished GR2 chimera
replication that was observed in cell culture (Fig. 4). This
interpretation seems unlikely, however, since viral functions were not
significantly compromised in vivo as the GR2 chimera replicated
sufficiently well in tamarins to cause disease (Fig. 5A and B).
Infection of chimpanzees with AGM-27 does not cause overt hepatitis but
does protect these animals against heterotypic cross-challenge with a
wild-type human virus, HM-175 (14). These observations suggest that the AGM-27 virus functions as a live attenuated vaccine for HAV in chimpanzees, the primate model which most closely resembles humans in its response to HAV. However, the infectivity and/or replication of AGM-27 in chimpanzees is relatively inefficient, and
this may be a practical limitation for development of the simian virus
itself as a vaccine candidate. It is interesting to note that HAV
strains that have been isolated from Old World monkeys (AGM-27, CY-145,
and JM-55/CY-55) have amino acid substitutions in VP3 and VP1 that have
been found in neutralization escape mutants of human HAV strains
(25, 31, 32, 43). This has led to the speculation that the
antigenic differences in the capsid proteins (20, 31, 43)
may have evolved to facilitate interaction of the phylogenetically
distinct viruses with cellular receptors in their natural hosts. This
is one possible explanation for the apparent difficulty that is
observed in infecting Old World monkeys with human HAV strains and the
poor susceptibility of chimpanzees to infection with AGM-27. A chimera
between AGM-27 and HAV/7, which has the human HAV-encoded capsid
proteins, could be a more promising candidate than the simian virus
itself for development of a live attenuated vaccine. If the efficiency
of virus infectivity is indeed a function of the virus capsid,
infectivity for humans would be greater if the chimeric viral genome
was encapsidated by structural proteins from a human strain of virus.
This would also be advantageous because such a chimera should induce
serum neutralizing antibodies against the major antigenic determinants in VP3 and VP1, which are present in all human strains of HAV.
Tamarins and chimpanzees have been valuable animal models for
predicting HAV pathogenicity for humans. In general, partially attenuated HAV strains normally show a greater level of attenuation in
chimpanzees and humans than in tamarins (21, 34). This was
also true for the GR2 and GR4 chimeras, which appeared to be more
attenuated for chimpanzees than for tamarins (Fig. 5 and 6).
Several cell culture-adapted strains of HM-175 have previously been
considered as candidate live vaccines. These include the HM-175 P32
virus (21), which was passaged 32 times in primary AGMK
cells, HAV/7 (5, 7), which was derived from a molecular clone of a strain that was passaged 35 times in AGMK cells, and the
MRC-5 virus (40), which had been adapted to replicate in MRC-5 cells, a substrate that is licensed for vaccine production. The
level of attenuation of the HM-175 P32 and HAV/7 strains is comparable
to that of the GR4 chimera for tamarins (5, 7, 21) and
chimpanzees (21). The MRC-5 virus is significantly more
attenuated for tamarins and chimpanzees (35a) than is either its parent strain, HM-175 P32 (21), or the GR4 chimera (this study) and appears to be overattenuated for humans (40).
In previous studies with a large number of chimeras between wild-type
HM-175 and the cell culture-adapted variant, HAV/7, combinations of
mutations throughout the genome resulted in similar efficiencies of
replication of the virus in cell culture (11a, 12). To date,
no single mutation that resulted in attenuation of the virus for
primates has been identified (11, 11a). Among the
simian-human chimeras discussed in this study, the GR4 chimera appears
to have a constellation of changes that provides the necessary balance
between replication of the virus in cell culture and the appropriate
level of attenuation of the virus for both tamarins and chimpanzees
that is required in a potential live vaccine candidate. Further studies
with simian-human chimeras that contain only a subset of the
differences in 2C that are present in GR4 would be useful in
determining whether multiple changes contribute to the attenuation of
GR4. However, with 13 amino acid differences between HAV/7 and GR4, the
number of possible combinations of mutations that can potentially be
tested is considerable and is a practical limitation.
Generation of chimeras between two distinctly different strains of HAV,
both of which are attenuated for chimpanzees, offers an alternative and
novel approach to developing a live vaccine for HAV. With the
availability of a new AGMK cell line that is acceptable for vaccine
production (32a), the number of HAV strains that can be
considered for vaccine development has been greatly expanded. These
include both the AGM-27 and HAV/7 parent strains as well as the
simian-human chimeras discussed in this study. Our initial observations
suggest that the GR4 chimera may be a promising candidate for a live
HAV vaccine.
 |
ACKNOWLEDGMENTS |
We thank Ron Engle for performing the serological assays and
Marianne Lewis for technical assistance.
This work was supported in part by NIAID contracts N01-A0-05069 and
N01-A0-45180.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Laboratory of
Infectious Diseases, National Institute of Allergy and Infectious
Diseases, Building 7, Room 203, 7 Center Dr. MSC 0740, Bethesda, MD
20892-0740. Phone: (301) 496-6227. Fax: (301) 402-0524. E-mail:
graychaudh{at}atlas.niaid.nih.gov.
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