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J Virol, July 1998, p. 5408-5413, Vol. 72, No. 7
0022-538X/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Nonreciprocal Pseudotyping: Murine Leukemia Virus Proteins Cannot
Efficiently Package Spleen Necrosis Virus-Based Vector RNA
Jeanine L.
Certo,1
Betsy F.
Shook,2
Philip D.
Yin,3
John T.
Snider,2 and
Wei-Shau
Hu1,2,3,*
Department of Genetics and Developmental
Biology,1
Mary Babb Randolph Cancer
Center,2 and
Department of Microbiology
and Immunology,3 West Virginia University,
Morgantown, West Virginia 26506
Received 28 October 1997/Accepted 18 March 1998
 |
ABSTRACT |
It has been documented that spleen necrosis virus (SNV) can package
murine leukemia virus (MLV) RNA efficiently and propagate MLV vectors
to the same titers as it propagates SNV-based vectors. Although the SNV
packaging signal (E) and MLV packaging signal (
) have little
sequence homology, similar double-hairpin RNA structures were predicted
and supported by experimental evidence. To test whether SNV RNA can be
packaged by MLV proteins, we modified an SNV vector to be expressed in
an MLV-based murine helper cell line. Surprisingly, we found that MLV
proteins could not support the replication of SNV vectors. The decrease
in titer was approximately 2,000- to 20,000-fold in one round of
retroviral replication. RNA analysis revealed that SNV RNA was not
efficiently packaged by MLV proteins. RNA hybridization of the cellular
and viral RNAs indicated that SNV RNA was packaged at least 25-fold
less efficiently than MLV RNA, which was the sensitivity limit of the
hybridization assay. The contrast between the MLV and SNV packaging
specificity is striking. SNV proteins can recognize both SNV E and MLV
, but MLV can recognize only MLV
. This is the first
demonstration of two retroviruses with nonreciprocal packaging
specificities.
 |
INTRODUCTION |
Packaging of viral RNA is an
essential process of retroviral assembly (13, 59, 60).
Selection of the viral RNA during assembly is governed by the
interactions between viral proteins and the packaging signal in viral
RNA (13, 36, 37). Packaging signals have been identified in
many retroviruses. In most if not all identified packaging signals,
major portions of the signals are located in the 5' untranslated region
of the viral RNA between primer binding sites and gag
(36, 37, 46). The Gag polyprotein has been shown to
interact with the packaging signal in viral RNA and to select the RNA
for packaging (4, 9, 10, 25, 26, 29, 30, 37, 43, 51).
"Pseudotyping" refers to viral particles that contain RNA from one
virus and one or more proteins from another virus (7, 35, 50, 59,
60, 62, 68). In retroviral systems, pseudotyping is often
observed with the RNA of a defective virus and the protein(s) of a
closely related helper virus. Pseudotyping can also be observed with
genetically distinct viruses. However, when distinct viruses are
involved, the mixing is generally limited to the env gene products and not the gag-pol gene products (7, 59, 60, 62, 68). This limitation is probably due to the specific
recognition between the Gag polyprotein and the RNA genome. The
Gag polyprotein of one virus may not recognize the RNA of a
different virus. There are, however, at least two examples in which the
RNA of one retrovirus can be packaged and propagated entirely by the
viral proteins of a different retrovirus. First, the proteins of the
reticuloendotheliosis viruses (REV) can package the RNA of murine
leukemia virus (MLV)-based vectors (17, 19, 32, 65, 67).
Second, viral proteins of human immunodeficiency virus can package the
RNA of simian immunodeficiency virus (49).
REV form a group of avian type C retroviruses, including isolates
REV-A, spleen necrosis virus (SNV), duck infectious anemia virus, and
chicken syncytial virus (44, 64). Although the natural hosts
for these viruses are avian, these viruses are more similar to
mammalian oncoviruses (12). Members of the REV group are
classified as MLV-related viruses (12). The
gag-pol region of REV is similar to those of MLV and gibbon
ape leukemia virus (GaLV) by amino acid sequences, antigenicity of the
gag gene products, and cation preference of the reverse
transcriptase (2, 3, 32, 34, 53, 55, 56). It has been
observed that the proteins of REV-A and SNV, two highly homologous
members of the REV group, can efficiently package MLV-derived viral
vectors. These pseudotyped viruses can reach titers similar to
those of the SNV vectors (17, 19, 32, 65, 67).
Secondary-structure and mutational analysis has demonstrated that even
though the packaging signal of MLV (
) and the packaging signal of
SNV (E) lack sequence homology, they both contain a similar
double-hairpin structure (33, 65). It was further
demonstrated that the MLV double-hairpin structure could functionally
replace the SNV double-hairpin structure; a vector with a chimeric
packaging signal from MLV and SNV was efficiently packaged by SNV
proteins (65).
Given the ability of REV and SNV proteins to support MLV vector
replication, it is logical to question whether MLV proteins can also
support SNV vector propagation. In this study, we performed the
reciprocal experiment to examine the ability of MLV proteins to support
the propagation of SNV vectors. We found that SNV vector RNAs were not
packaged by the MLV helper cell lines; this indicates that the MLV
proteins cannot recognize the SNV packaging signal.
 |
MATERIALS AND METHODS |
Construction of viral vectors.
Retroviral vectors were
constructed by standard cloning techniques (52). Plasmids of
retroviral vectors are preceded by a p, whereas the viruses or
proviruses generated from the plasmid are not. For example, pJS12
refers to the plasmid whereas JS12 refers to the virus or the
provirus. pJS12 and pJS14 were both derived from plasmid pJD220SVHy
(16). pJD220SVHy is an SNV-based vector containing an
internal simian virus 40 (SV40) promoter expressing the hygromycin
phosphotransferase B gene (hygro). The U3 promoter of the 3'
long terminal repeat (LTR) was removed by a 400-bp deletion without
altering the 3' attachment site. A full-length
-galactosidase gene
(
-gal) was inserted upstream of the SV40 promoter to form
pJS11. A 0.44-kb restriction enzyme fragment containing MLV U3 was
inserted in the deleted U3 to form pJS12. This 0.44-kb fragment was
derived from pME149 (21) and contains most of the MLV U3
sequences as well as 30 bp of R (57). A 0.4-kb DNA fragment
containing SNV U3 was inserted in the same position in pJS11 to form
pJS14. This 0.4-kb DNA fragment contained the DNA sequences between the
SacI and AvaI sites in the SNV U3 and replaced
all of the deleted U3 sequences in pJD220SVHy.
Cells and virus propagation.
D17 is a canine osteosarcoma
cell line that is permissive to infection by SNV, REV-A, and MLV
(48). C3A2 is derived from D17 and expresses REV-A
gag-pol and env (61). REV-A and SNV are more than 90% homologous (19, 32), and REV-A proteins can package SNV-derived vectors with high efficiency (17, 19, 32,
65, 67). Both C3A2 cells and D17 cells were maintained in
Dulbecco's modified Eagle's medium with 6% calf serum (HyClone laboratory). PG13 is a helper cell line that expresses MLV
gag-pol and GaLV env (41). PA317 is an
amphotropic MLV-based helper cell line (40). Both PG13 and
PA317 are derived from NIH 3T3tk
cells and were
maintained in Dulbecco's modified Eagle's medium with 10% calf
serum. All cell lines were maintained in incubators at 37°C under 5%
CO2.
Plasmids were introduced into the helper cells by Polybrene-dimethyl
sulfoxide transfection (31). Cell culture media were changed
to fresh media 24 to 48 h before the virus was harvested. Virus-containing cell culture media were collected and subjected to
centrifugation at 2,000 × g for 10 min to pellet the
cells and cellular debris. Supernatants were isolated and used either to infect new cells or to isolate RNA. All the viruses used in infection were freshly harvested. Serial dilutions were made and used
to infect target cells in the presence of Polybrene (50 µg/ml) for
4 h at 37°C.
To compare the viral titers of different vector constructs, viruses
generated from each pool of the transfected cells were
used to infect
fresh helper cells. Pools of infected helper cells
were generated; the
pool size ranged between 1,500 and 6,000 colonies
per pool. Helper cell
pools containing different constructs were
plated out at 5 × 10
6 cells per 100-mm dish. Viruses were harvested from
these cells
36 to 48 h later and were used to infect D17 cells.
Within each
set of experiments, different viruses were generally
harvested
within the same hour.
RNA isolation and analysis.
Cellular RNAs were isolated with
the Trizol reagent (Gibco/BRL) as specified by the manufacturer. The
integrity of the cellular RNA was examined by gel electrophoresis and
by inspection of the ribosomal bands.
Viral RNAs were isolated by the following methods. Cells infected with
vectors were plated at a density of 5 × 10
6 per
100-mm dish on the same day, and supernatants were collected
2 days
later. An aliquot of the wild-type virus was added to serve
as a
control. Cell culture supernatants were subjected to low-speed
centrifugation to remove cells and cellular debris. The supernatants
were then centrifuged at 25,000 rpm for 90 min in an SW41 rotor.
Viral pellets were resuspended in 50 mM Tris-1 mM EDTA (pH 7.5
to 8).
A final concentration of 0.1% sodium dodecyl sulfate and
200 µg of
tRNA per ml was added to the viruses, and the mixtures
were extracted
once with phenol, once with phenol-chloroform,
and once with
chloroform. A 1/10 volume of 3 M sodium acetate
and 2 volumes of 100%
ethanol were added to the RNAs. The RNA
pellets were resuspended in 100 µl of diethylpyrocarbonate-treated
water.
Slot blotting was performed with the convertible filtration manifold
system (Gibco/BRL) under the conditions recommended by
the
manufacturer. Slot blots were hybridized with DNA fragments
labeled
with [

-
32P]dCTP by the random-priming method
(
22). All the probes used
had a specific activity greater
than 10
9 cpm/µg of DNA. The hybridization conditions were
the same as
previously described (
27). The yield of the
viral RNA was first
standardized by the amount of wild-type SNV RNA. A
1.5-kb
HindIII
DNA fragment containing most of the REV-A
env gene was used as
a template for the random-priming
reaction to generate a wild-type
SNV-specific probe. A 3.8-kb DNA
fragment containing

-
gal was
used to generate the probe
to detect GA1, JS12, and JS14 RNAs.
Quantitations were performed with a
PhosphorImager (Molecular
Dynamics) and ImageQuant software.
 |
RESULTS |
Retroviral vectors used to study viral RNA packaging.
To
determine whether SNV vector RNA can be pseudotyped by MLV
proteins, a set of modified SNV vectors was constructed. It was
necessary to modify the SNV vectors to use the currently available MLV-based murine helper cell lines, because the SNV U3 promoter is not
transcriptionally active in murine cells (20). The
structures of SNV-based vectors JS14 and JS12 are illustrated in Fig.
1. Both of these two vectors contain a
complete 5' LTR, E,
-gal, SV40 early promoter, and
hygro. For both constructs, the viral U3 promoter
drives the expression of
-gal whereas the internal SV40 promoter drives the expression of hygro. The 3' LTRs of
these two vectors contain different sequences. In pJS14, the U3
region of the 3' LTR contains the SNV U3 promoter, whereas in
pJS12 the SNV U3 region of the 3' LTR was replaced by the MLV U3
promoter (Fig. 1). When pJS12 was transfected into helper cells, the
full-length viral mRNA was expressed from the SNV U3 promoter located
in the 5' LTR. The full-length viral RNA contains the R-U5 from the 5' LTR and the U3-R from the 3' LTR. The 3' U3 in pJS12 contains the MLV
U3 sequences, which are used as a template for DNA synthesis during
reverse transcription to generate proviruses containing MLV U3 in both
LTRs (24). Therefore, in the progeny provirus resulting from
infection, the full-length mRNA was expressed by the MLV U3.

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FIG. 1.
Structures of retroviral vectors used to study
pseudotyping. pJS12 and pJS14 are SNV-based retroviral vectors,
whereas pGA1 is an MLV-based retroviral vector. SNV vectors pJS12
and pJS14 each contain -gal expressed from the U3
promoter and hygro expressed from an internal SV40 promoter
(SV). The 3' LTR of pJS12 contains MLV U3 instead of SNV U3. pGA1, an
MLV-based vector, also contains -gal and a neo
gene that is expressed by an encephalomyocarditis virus IRES. Open
boxes represent SNV LTR sequences, and hatched boxes denote MLV LTR
sequences. The SNV packaging signal (E) is designated by a thick line,
whereas the MLV packaging signal ( ) is designated by a thin
line.
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MLV-based vector pGA1 was used as a positive control in these
experiments (
28); the structure of pGA1 is illustrated in
Fig.
1. pGA1 contains MLV LTRs,

,

-
gal, an internal
ribosomal
entry site (IRES) from encephalomyocarditis virus
(
14), and
the neomycin phosphotransferase gene
(
neo) (Fig.
1). Both

-
gal and
neo
are expressed from the transcripts derived from 5' U3;
IRES allows
translation of
neo.
Experimental protocol.
The experimental protocol used is
illustrated in Fig. 2. Viral constructs
pJS14 and pJS12 were separately transfected into a REV-A helper cell
line, C3A2, which can package SNV vectors efficiently. Transfected C3A2
cells were placed under hygromycin selection, and hygromycin-resistant
colonies were pooled. The MLV vector pGA1 was propagated in a similar
manner, except that it was transfected into the MLV helper cell line
PA317. PA317 was used to propagate GA1 because both GA1 and C3A2
contain neo; thus, the presence of GA1 in C3A2 cells cannot
be directly selected.

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FIG. 2.
Experimental protocol to study whether MLV proteins can
pseudotype SNV vectors. Plasmid DNAs were used to separately
transfect C3A2 (pJS12 and pJS14) or PA317 (pGA1) helper cells. JS12,
JS14, and GA1 virus stocks were harvested separately from transfected
helper cells and used to infect PG13 helper cells. Infected PG13 cells
were selected with the appropriate drugs, pooled, and expanded. Viruses
harvested from the pools were used for either RNA isolation or
infection of D17 target cells to determine viral titers. DNA and RNA
were also isolated from the infected PG13 cells for structural and
expression analysis.
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JS14, JS12, and GA1 viruses were harvested from the transfected cells
and used to separately infect PG13 helper cells. PG13
cells express MLV
gag-pol and GaLV
env. In each set of experiments,
infections of PG13 with different viruses were performed on the
same
day. Infected PG13 cells were subjected to appropriate drug
selections, and drug-resistant cells infected with each vector
were
pooled separately. Each pool represented a minimum of 1,000
colonies of infected cells. These pools of infected cells were
plated
at 5 × 10
6 cells per 100- mm dish. Two days
after the cells were plated,
viruses generated from each
cell pool were harvested and used
for either RNA isolation or infection
of D17 cells to determine
the viral titers. Cellular DNA and RNA
were also isolated from
these helper cell pools to analyze proviral
structures and viral
RNA expression.
PG13 is derived from a murine cell line, NIH 3T3tk

, and
expresses MLV
gag-pol and GaLV
env. The
gag gene products select the
packaged RNA; therefore, the
interactions between MLV Gag polyproteins
and RNA were analyzed
in this system. Viruses propagated from
PG13 contain the GaLV Env, and
they cannot infect murine cells
but can infect cells from other species
such as D17 cells. This
eliminates the possibility of reinfection
during the propagation
of the virus-containing helper cells and
avoids possible amplification
of differences in packaging efficiency
between different vectors.
Proviral structures in infected PG13 helper cells.
Genomic
DNAs were isolated from pools of PG13 helper cells containing JS14,
JS12, or GA1. The proviral structures of these vectors in helper cell
pools were analyzed by restriction enzyme digestion and Southern
hybridization. Viral DNA structures and restriction enzyme sites
are illustrated in Fig. 3A. All three constructs contain an EcoRV site in
-gal (Fig.
3A). In addition, the MLV U3 contains two EcoRV
restriction enzyme sites, whereas the SNV U3 does not contain
any EcoRV sites. Therefore, if the JS12 proviruses in the
PG13 cells contain the MLV U3, digestion with EcoRV should
generate 4.1- and 2-kb DNA fragments that can be detected by
Southern blotting with a probe derived from
-gal DNA. JS14 contains SNV U3; therefore, the only EcoRV
site present in JS14 is located in
-gal. The sizes of the
JS14 DNA fragments from EcoRV digestion vary depending on
the locations of the enzyme sites in the flanking sequences in the
cellular genome. Because retroviral integration is random, when
DNA derived from a pool of JS14- infected cells is
analyzed, a smear is expected. GA1 also contains the MLV U3; 3.9- and 2.5-kb bands are expected upon EcoRV
digestion and hybridization with the
-gal probe
(Fig. 3A). Southern analysis indicated that all of the
proviral structures were as expected. An example of the Southern
analysis is shown in Fig. 3B. These analyses demonstrate that
during reverse transcription of JS12, the MLV U3 was
duplicated (Fig. 3B).

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FIG. 3.
(A) Predicted proviral structures of JS14, JS12, and
GA-1. Zigzag lines, host DNA sequences; cross-hatched box labeled
Probe, DNA fragment used to generate the radioactively labeled probe;
RV, EcoRV restriction enzyme site. All the other
abbreviations are identical to those in Fig. 1. (B) Southern analysis
of genomic DNAs isolated from pools of PG13 cells infected with JS12,
JS14, or GA1. The probe was a radioactively labeled -gal
DNA fragment (as shown in panel A). JS12 DNA produced 4.1- and 2-kb
bands. JS14 DNA produced a smear because a pool of infected PG13 cells
was used. GA1 containing genomic DNA produced 3.9- and 2.5-kb bands.
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The MLV helper cell line can propagate MLV vectors but not SNV
vectors.
Supernatants harvested from PG13 cells containing JS12,
JS14, or GA1 proviruses were used to infect D17 cells. These infected D17 cells were placed under appropriate drug selections to determine the titers of these viruses. Data from three sets of experiments are
shown in Table 1.
The MLV vector GA1 contains the MLV U3 promoter and MLV

. Thus, as
expected, the GA1 RNA was efficiently expressed and packaged
in
PG13 cells. GA1 was propagated efficiently in PG13
cells, with
titers varying from 10
4 to 10
5
CFU/ml.
PG13 cells failed to produce infectious JS14 viruses. The SNV U3
promoter drives the transcription of the full-length JS14
RNA. Because
SNV U3 promoter is not transcriptionally active in
murine cells, it is
expected that JS14 full-length RNA will not
be expressed or packaged in
PG13 cells to produce infectious viruses.
PG13 cells also failed to propagate the SNV E-containing JS12. After
reverse transcription, JS12 contained MLV U3 in both
LTRs (Fig.
3).
Thus, full-length, E-containing JS12 RNA should
be present in PG13
cells. However, the infection data indicated
that infectious JS12
viruses were not produced by PG13. The defect
in the virus production
could be at the level of RNA expression,
RNA packaging, or
postassembly. To determine the cause of this
defect, the cellular and
viral RNAs of these vectors in PG13 cells
were examined.
Analysis of cellular and viral RNAs from PG13 cells.
To
analyze the expression of JS14, JS12, and GA1, total cellular RNAs were
isolated from vector-infected PG13 cell pools. Equal amounts of
cellular RNA from each sample were used to prepare fivefold serial
dilutions; the first dilution of each sample contained 7 µg of total
RNA. These RNAs were applied to nitrocellulose filters to generate slot
blots. These RNA blots were hybridized with probes generated from DNA
fragments containing
-gal to detect full-length, packaging signal-containing RNA. An example of the slot blots from
cellular RNAs is shown in Fig. 4A.

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FIG. 4.
RNA hybridization studies with cellular and viral RNA
from infected PG13 cell pools. (A) RNA analysis of PG13 cellular RNA
hybridized with the -gal probe (Fig. 3A). The dilutions
of RNA are shown above the blot. A 7-µg portion of total cellular RNA
was used in the 1× dilution. (B) RNA analysis of viral RNA with the
-gal probe. (C) RNA analysis of spiked wild-type SNV RNA
with the REV-A env probe. Wild-type SNV was added to the
supernatant before the isolation of viral RNA to adjust for the
possible loss of RNA during the purification procedures.
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Cellular RNA analysis indicated that both GA1 and JS12 RNA were
expressed in PG13 cells. However, JS12 RNA is expressed at
a
fivefold-lower level than GA1 RNA. This may be caused by the
interference of the internal SV40 promoter in JS12 (
21).
Expression
of

-
gal in JS14 is driven by the SNV U3
promoter. Slot blot analysis
indicates that a very small amount of

-
gal-containing RNA is
present in JS14-infected PG13
cells, approximately 40-fold less
than that of GA1 and 8-fold less than
that of JS12.
Viral RNAs were isolated to examine the packaging of these vector RNAs
in viral particles generated by PG13 (Fig.
4B and C).
For each set of
experiments, supernatants from pools of PG13 cells
infected with JS12,
JS14, or GA1 were collected. An aliquot of
wild-type SNV was added to
the supernatants at a 1:25 ratio to
serve as an internal control to
adjust for possible loss of RNAs
during the isolation procedure. Viral
RNAs were isolated, and
fivefold dilutions were made; slot blots
containing these RNAs
were generated in duplicate. One set of the slot
blots were hybridized
with probe containing

-
gal
sequences. An example is shown in
Fig.
4B. These blots demonstrated
that GA1 was packaged efficiently,
which is consistent with the
infection data (Table
1). The sensitivity
of our RNA analysis allows
detection of up to a 125-fold dilution
of the GA1 viral RNA. The
signals from JS12 and JS14 RNAs were
barely above background and were
similar to those of the 125-fold
dilution of GA1 viral RNA. The signals
of JS12 and JS14 were similar
to each other, although JS12 RNA was more
abundant in the cellular
RNA, indicating that the signal was either
background in RNA detection
or nonspecific packaging by the viral
proteins. The other set
of duplicated slot blots were hybridized to
probes containing
the SNV
env sequences. An example is shown
in Fig.
4C. These analyses
showed that the differences observed in the
viral RNA packaging
(Fig.
4B) were not due to the loss of RNA during
the purification
procedure.
In the infected PG13 cells, GA1 RNA is approximately fivefold more
abundant than JS12. However, the viral RNA analysis indicated
at least
a 125-fold difference in the viral RNA signal. Thus,
GA1 RNA is
packaged at least 25-fold better than the SNV E-containing
JS12 RNA.
This is in sharp contrast to our observations that SNV
proteins can
package MLV

-containing vector RNA with the same
efficiency as they
can package the SNV E-containing RNA (
67).
The REV helper cell line propagates SNV vectors JS12 and JS14
efficiently.
It was possible that MLV Gag proteins could not
package JS12 RNA because JS12 contained defective packaging
signals and not because MLV Gag cannot recognize SNV E. To eliminate
this possibility, the efficiency of JS12 propagation in the REV-A
helper cell line, C3A2, was examined. A protocol similar to the one in
Fig. 2 was used, except that C3A2 was used instead of PG13. JS12 and
JS14 viruses were harvested from transfected C3A2 cells and used to infect fresh C3A2 cells. Infected C3A2 cells were pooled, and viruses
were harvested from these cells to infect D17 cells to determine virus
titers. Viral RNAs and cellular RNAs were also isolated and subjected
to hybridization analysis. Infection data indicated that JS12 and JS14
could be propagated efficiently in C3A2 cells (Table 1). Both of these
vectors achieved titers similar to the titers generated by typical
SNV-based vectors in C3A2 cells. In all experiments, JS12 consistently
produced a 3- to 10-fold-lower titer than JS14. Examples of cellular
RNA and viral RNA analysis are shown in Fig.
5. Cellular RNA analysis revealed that
JS12 is expressed at a fivefold-lower efficiency than JS14 (Fig. 5A), most probably because these two vectors were expressed from different promoters. The same fivefold difference is reflected in the packaged viral RNA (Fig. 5B). Thus, JS12 RNA is packaged just as efficiently as
the JS14 RNA in C3A2 cells. Taken together, these data indicate that
JS12 can be packaged and propagated efficiently in C3A2 cells. Thus,
the lack of JS12 RNA in PG13-produced virions is due to the failure of
MLV Gag proteins to recognize SNV E.

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FIG. 5.
RNA hybridization studies with cellular and viral RNA
from infected C3A2 cells. (A) RNA analysis of C3A2 cellular RNA
hybridized with the -gal probe. The dilutions are
shown above the blot. A 7-µg portion of total cellular RNA was used
in the 1× dilution. (B) RNA analysis of viral RNA with the
-gal probe. (C) RNA analysis of spiked
wild-type SNV viral RNA with the REV-A env probe.
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In summary, the MLV helper cell line does not support the propagation
of SNV vectors, although MLV vectors can be propagated
by SNV-based or
REV-A-based helper cell lines very efficiently.
In parallel
experiments, the MLV vector was propagated at 10
4 to
10
5 CFU/ml; however, no SNV vector titer was detected.
Considering
that SNV vector RNA was expressed at a 5-fold-lower
level, the
decrease in titer is approximately 2,000- to
20,000-fold. RNA
analysis revealed that SNV E-containing RNA is
packaged at least
25-fold less efficiently than is MLV RNA. The lack of
recognition
between MLV Gag polyproteins and SNV E-containing
RNA plays a
major role in the inability of the MLV helper cell line to
propagate
SNV vectors that can be expressed in murine cells.
 |
DISCUSSION |
The results of this study demonstrate striking differences between
the MLV and SNV packaging specificities. SNV proteins can recognize
both SNV E and MLV
, but MLV proteins can recognize only MLV
.
This demonstrates a difference in packaging specificity between the two
viruses; MLV proteins are more selective in RNA packaging, and SNV
proteins are more relaxed. Why should viruses have different packaging
specificities? One possibility is that the selection pressures placed
on these two viruses are different. Analyses of various murine cells
indicate that numerous MLV-like endogenous elements are present in the
murine genome (6, 11). For example, VL-30 RNA can be
packaged by MLV proteins (25, 39, 45, 54). Thus, MLV may
have evolved a higher specificity to suppress the packaging of
endogenous MLV-like elements present in the murine genome. In contrast,
REV and SNV are known only as exogenous viruses. The avian genome may
not contain endogenous SNV-like elements to force the selection
pressure on a stringent RNA packaging selection. Therefore, the
difference between these two viruses may reflect the genetic
environment where the viruses propagate.
Alternatively, SNV proteins may not have a general property of relaxed
packaging but may specifically recognize the MLV
. It is thought
that REV, the group of avian viruses that includes SNV, is derived from
mammalian oncoviruses (32, 34). The packaging signal and the
coding region may have evolved at different rates. The gag
gene codes for the polyprotein that contains the signal to go
to the cell membrane, select the packaged RNA, and interact with Env
protein (63). Any changes that drastically decrease any of
the above-described functions will confer a selective disadvantage. Thus, changes that result in the termination of the open reading frame,
alteration of the polyprotein structure, or protein folding will be negatively selected. On the other hand, the functional unit of
a packaging signal is RNA. Changes on most bases may be tolerated as
long as the overall structures are maintained. Thus, it is possible
that the SNV packaging signal diverged at a higher speed than
gag-pol. If so, Gag-Pol of SNV would be expected to maintain
its recognition of the MLV
, but the SNV E could have diverged to
the point that it can no longer be recognized by MLV Gag-Pol.
The difference in the packaging specificities of MLV and SNV provides a
unique system to dissect the recognition between Gag polyprotein and RNA. It is thought that the nucleocapsid (NC) portion of the gag gene products plays an important role in
packaging specificity (1, 15, 18, 25, 26, 38, 39, 47). In
several viral systems, chimeric Gag proteins had been constructed to
contain NC derived from a different virus (5, 18, 51, 69).
The packaging specificity of these chimeric Gag proteins was altered.
We are currently examining the factors that are responsible for the
differences in packaging specificity between these two viruses.
The difference in the virus titers between JS12 and GA1 is 2,000- to
20,000-fold. The detected RNA packaging difference is 25-fold. It is
possible that the difference in RNA packaging is greater; however,
other factors may contribute to the difference as well. For example,
the SNV genome may not be a suitable substrate for MLV reverse
transcriptase or integrase. The lack of RNA packaging makes it
difficult to further dissect the efficiency of these processes. These
two viruses contain the same primer binding sites and use the
same tRNA primer; thus, the initiation of reverse transcription
is unlikely to be affected.
The efficient propagation of MLV vectors in SNV-based helper cell lines
clearly indicated that MLV attachment sites (att) can be
effectively used by SNV integrase. However, it is not clear whether SNV
att sites are suitable substrates for MLV integrase. The
att sites of the two viruses only contain the same four
terminal bases that are known to be critical for most retroviral
integrases, including those of MLV and SNV (13). It is known
that MLV integrase can tolerate multiple mutations in the
att sites (42); DNA containing SNV 3'
att and MLV 5' att can be used as a substrate by
MLV integrase (67), although with unknown efficiency. As a
result, the role of integration efficiency in the decrease of viral
titer is unclear.
Altered U3 vectors were used in this study. It has been previously
demonstrated that by altering the U3 enhancers, the expression of the
viral vector can be manipulated (23, 58). In the JS12 vector
described in this report, the entire U3 was altered. Similar strategies
can be used to generate retroviral vectors with different regulation of
expression for gene therapy. While this work was in progress, it was
demonstrated that a similar strategy could be used to generate
Tat-inducible MLV vectors (8). Therefore, this strategy is
likely to be useful for the generation of cell-type-specific vectors.
 |
ACKNOWLEDGMENTS |
J.L.C. and B.F.S. contributed equally to this work.
We thank Vinay Pathak for providing the retroviral construct prior to
publication, continuous intellectual input on this project, and helpful
comments on the manuscript. We also thank Jeffrey Anderson, Ben Beasly,
Greg Arnold, Ella Harvey Bowman, Robert Bowman, Krista Delviks, John
Julias, and Lou Halvas for critical reading of and helpful comments on
the manuscript.
This work is supported by Public Health Service grant CA58345 to
W.-S.H. P.D.Y. is supported by the West Virginia University medical scientist training program. B.F.S. is partially supported by
the "Spurlock" undergraduate summer cancer research fellowship and
Van Liere summer research fellowship for medical students.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Mary Babb
Randolph Cancer Center, West Virginia University, Morgantown, WV 26506. Phone: (304) 293-5949. Fax: (304) 293-4667. E-mail:
whu{at}wvumbrcc1.hsc.wvu.edu.
 |
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