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Journal of Virology, November 1998, p. 9069-9078, Vol. 72, No. 11
0022-538X/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Oral Immunization of Macaques with Attenuated
Vaccine Virus Induces Protection against Vaginally Transmitted
AIDS
Sanjay V.
Joag,1
Zhen Qian
Liu,1
Edward B.
Stephens,1
Marilyn S.
Smith,1
Anil
Kumar,1
Zhuang
Li,1
Chunyang
Wang,1
Darlene
Sheffer,1
Fenglan
Jia,1
Larry
Foresman,1
Istvan
Adany,1
Jeff
Lifson,2
Harold M.
McClure,3 and
Opendra
Narayan1,*
Marion Merrell Dow Laboratory of Viral
Pathogenesis and Department of Microbiology, Molecular Genetics,
and Immunology, University of Kansas Medical Center, Kansas City,
Kansas 661601;
NCI-Frederick Cancer
Research, Frederick, Maryland 217022; and
Yerkes Regional Primate Research Center, Emory
University, Atlanta, Georgia 303223
Received 5 June 1998/Accepted 24 July 1998
 |
ABSTRACT |
The chimeric simian-human immunodeficiency virus
SHIVKU-1, bearing the envelope of human immunodeficiency
virus type 1 (HIV-1), causes fulminant infection with subtotal loss of
CD4+ T cells followed by development of AIDS in
intravaginally inoculated macaques and thus provides a highly relevant
model of sexually transmitted disease caused by HIV-1 in human beings.
Previous studies using this SHIV model had shown that the
vpu and nef genes were important in
pathogenesis of the infection, and so we deleted portions of these
genes to create two vaccines,
vpu
nefSHIV-4 (vaccine 1) and
vpuSHIVPPc (vaccine 2). Six adult macaques
were immunized subcutaneously with vaccine 1, and six were immunized orally with vaccine 2. Both viruses caused infection in all inoculated animals, but whereas vaccine 1 virus caused only a nonproductive type
of infection, vaccine 2 virus replicated productively but transiently
for a 6- to 10-week period. Both groups were challenged 6 to 7 months
later with pathogenic SHIVKU-1 by the intravaginal route.
All four unvaccinated controls developed low CD4+ T-cell
counts (<200/µl) and AIDS. The 12 vaccinated animals all became
infected with SHIVKU-1, and two in group 1 developed a persistent productive infection followed by development of AIDS in one.
The other 10 have maintained almost complete control over virus
replication even though spliced viral RNA was detected in lymph nodes.
This suppression of virus replication correlated with robust antiviral
cell-mediated immune responses. This is the first demonstration of
protection against virulent SHIV administered by the intravaginal
route. This study supports the concept that sexually transmitted HIV
disease can be prevented by parenteral or oral immunization.
 |
INTRODUCTION |
Human immunodeficiency virus type 1 (HIV-1) is primarily a sexually transmitted virus which causes
persistent systemic infection and loss of CD4+ T cells
which culminates in loss of immunocompetence and development of AIDS.
Although several effective anti-HIV drugs, notably viral protease
inhibitors, are now available, their widespread use is hampered by
their high cost and the need for multiple treatments daily for an
indefinite period. Their use is thus not feasible in less developed
countries, where the bulk of HIV infections occur. Under these
conditions, development of a safe and effective vaccine is a priority.
Moreover, such a vaccine should protect against sexual transmission of
the virus. The inability of HIV-1 to infect animals other than
chimpanzees has meant that macaque models using nonhuman primate
lentiviruses have become the only practical alternative for testing
proof-of-concept approaches to vaccines against HIV-1. The simian
immunodeficiency virus SIVmac, which is closely related
to HIV-2 and SIVsm, causes AIDS in macaques and has
been extensively used in vaccine studies. Macaques vaccinated with
attenuated strains of SIVmac239, produced by deleting
auxiliary genes, including nef, resisted infection after
challenge with virulent strains of SIVmac (1, 5,
21, 23, 24, 30). A major limitation of the
SIVmac239 model of AIDS is that this virus is only
distantly related to HIV-1 genetically, and although SIVmac causes AIDS in macaques, the biological
properties of SIVmac vary greatly from those of HIV-1,
especially with reference to neutralization and replication in
macrophages (31). Since some of these differences are
attributable to the envelopes of the viruses, chimeric simian-human
immunodeficiency virus (SHIV), which contains the core of
SIVmac and the envelope of HIV-1, was created in hopes
of simulating the effects of HIV-1 in macaques more accurately than
does SIVmac. Newly constructed SHIVs were infectious
and induced neutralizing antibodies to HIV-1 but were not pathogenic,
and thus vaccines could not be evaluated for efficacy in preventing
disease. Our recent derivation of virulent SHIV which causes almost
total loss of CD4+ T cells and AIDS in macaques 6 months
after inoculation established a new and reproducible model which
accurately reflected HIV-1 disease, although compressed into a short
time frame (9, 11, 12). Moreover, the new virus is virulent
after intravenous, oral, or intravaginal infusion (7, 9,
13). This model thus proved ideal for evaluating efficacy of
vaccines against sexually transmitted HIV-1.
Our choice of live-virus vaccines was based on observations of genetic
changes occurring in SHIV during the animal passages that yielded
virulent SHIVKU-1. The original molecularly cloned SHIV-4
is avirulent and has a stop codon in vpu (16).
SHIVKU-1 is extremely virulent and has an open
vpu in addition to numerous mutations in the env
and nef genes (25, 27). However, most of the
changes in the latter two genes developed after vpu became functional (17). The genetic changes correlated with a newly acquired ability of the virus to replicate efficiently in macrophage cultures and at extremely high titers in the animals, with resultant subtotal loss of CD4+ T cells and development of AIDS.
Assuming that the changes in the auxiliary genes vpu and
nef were essential for development for virulence of the
virus, we deleted portions of both genes from original SHIV-4 and used
this virus as a vaccine (group 1). Oral inoculation of this virus into
two newborn pig-tailed macaques failed to result in infection in
the animals (19a). Therefore, in the vaccine trial described
in this report, the animals were inoculated subcutaneously with this
virus. Chimeric virus SHIVPPc was created by replacing the
env and nef genes of SHIV-4 with the
corresponding regions of virus isolated from macaque PPc, which died
with AIDS (26). SHIVPPc is macrophagetropic
(27). To test the attenuating potential of a vpu
deletion alone, we created virus
vpuSHIVPPc
and used this virus as a vaccine. This virus caused a transiently
productive infection in two newborn macaques after oral inoculation.
Therefore, in the vaccine experiment (group 2), this virus was
inoculated orally. Four unvaccinated controls and the 12 vaccinated
animals were challenged 6 to 7 months later by intravaginal infusion of
1 ml of undiluted SHIVKU-1 stock.
 |
MATERIALS AND METHODS |
Viruses.
We obtained a SHIV-4 DNA encoding the
env, tat, rev, and vpu
genes of HIV-1 HXB2c on a background of SIVmac239
(16) from Joseph Sodroski, Harvard University. Viral DNA was
transfected into CEMx174 cells to produce a virus that was used to
initiate passage in macaques. Virus from the fourth passage of SHIV-4, which was associated with AIDS and death of macaque PNb at 6 months, was amplified in culture of peripheral blood mononuclear cells (PBMC)
from a healthy macaque (12). Supernatant fluid from this culture (SHIVKU-1) had a titer of 104 50%
tissue culture infectious doses (TCID50)/ml in macaque PBMC and in C8166 cells. Aliquots of this SHIVKU-1 stock were
stored in liquid nitrogen.
Construction of
vpu
nef SHIV-4.
The
original SHIV-4 DNA consisted of two plasmids with the 5' and 3'
regions, respectively. All manipulations were performed with the
p3'SHIV-4. In the first step, as shown in Fig.
1, plasmid pUC19 was digested with
SspI and NdeI, blunt ended with the Klenow fragment of DNA polymerase, and ligated to generate pDS. The
SphI-KpnI fragment of p3'SHIV-4 was subcloned
into pDS to generate pDSvpu. Plasmid pDSvpu was
digested with SspI and BbsI, blunt ended, and religated to delete a 60-bp SspI-BbsI fragment
and generate pDSDvpu. Figure 2
shows the construction of
vpu
nef SHIV-4. First,
the SphI-KpnI fragment of 3'SHIV-4 was
replaced with the corresponding fragment of pDSDvpu to
yield p3'
vpuSHIV-4. Next,
p3'
vpuSHIV-4 was digested with RsrII and
NcoI, blunt ended, and ligated, resulting in the deletion of
an RsrII-NcoI fragment (including 205 bp of the
nef gene, encoding the first 69 amino acids of Nef). This plasmid was designated p
vpu
nefSHIV-4. Plasmids
p
vpu
nefSHIV-4 and p5'SHIV-4 were digested with
SphI and ligated with T4 DNA ligase, and the ligated DNA was
used to transfect C8166 cells as described previously (27).
Virus stocks were prepared, and aliquots were stored at
80°C. The
virus stock had a titer of 104 TCID50/ml in
C8166 cells.

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FIG. 2.
Genomic structures of 3'SHIV-4,
3' vpuSHIV-4 and 3' vpu nefSHIV-4. Striped
bars, HIV-1 sequences; solid bars, SIVmac239 sequences.
LTR, long terminal repeat.
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|
Construction of
vpuSHIVPPc.
The
construction of SHIVPPc has been described previously
(26). Briefly, we used plasmid pSHIVPPc-3, which
is a derivative of plasmid p3'SHIV-4 containing all of the changes
found in the env and nef genes of
SHIVPPc. The SphI/KpnI fragment from
pDSDvpu, containing the 60-bp deletion in vpu,
was subcloned into the SphI and KpnI sites of
pSHIVPPc-3. The resulting plasmid was designated p
vpuSHIVPPc (Fig.
3). Plasmids p5'SHIV-4 and
p
vpuSHIVPPc were digested with
SphI and ligated with T4 DNA ligase, and the ligated DNA was
used to transfect C8166 cells as described above.

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FIG. 3.
Genomic structure of
vpuSHIVPPc. , derived from
PPc spleen; , derived from PPc lymph node. LTR, long
terminal repeat.
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Vaccination of macaques and challenge with
SHIVKU-1.
Sixteen sexually mature (3- to 15-year-old)
female pig-tailed macaques (Macaca nemestrina) were obtained
from the Yerkes Primate Center, Atlanta, Ga. Six were inoculated
subcutaneously, close to the inguinal and axillary lymph nodes, with
1.0 ml of
vpu
nefSHIV-4 stock (vaccine 1), while two
control animals (PFy and PLy) were mock inoculated with saline. Seven
months (29 weeks) after vaccination, the six vaccinated and two control
macaques were challenged with 1.0 ml of undiluted SHIVKU-1
stock which was inoculated intravaginally in nontraumatic fashion as
described previously (9). This inoculum represents 30 50%
animal infectious doses determined by titration of the virus in animals
via the intravaginal route of inoculation (9). A second
intravaginal challenge dose of SHIVKU-1 was given 5 weeks
after the first challenge to ensure exposure to this virus. Six other
macaques were vaccinated with 1.0 ml of
vpuSHIVPPc stock (vaccine 2) by the oral
route, while two control animals (4267 and PDb) were mock inoculated
with culture medium. Six months later, all eight macaques were
challenged by intravaginal inoculation twice, 1 day apart, with 1.0 ml
of undiluted SHIVKU-1 stock.
Cell cultures.
The human T-cell line C8166 was used as the
indicator line to measure virus infectivity. Cells were cultured at a
concentration of 106/ml in RPMI medium (RPMI 1640 supplemented with 10 mM HEPES buffer [pH 7.3], 50 µg of gentamicin
per ml, 50 µM 2-mercaptoethanol, and 2 mM glutamine) with 10% fetal
bovine serum (FBS).
Processing of samples.
Heparinized blood obtained from the
femoral vein was centrifuged to separate plasma and buffy coats. Plasma
was assayed for p27 by using a capture enzyme-linked immunosorbent
assay kit (Coulter Laboratories, Hialeah, Fla.) and for infectivity in
C8166 cells. PBMC were separated from buffy coats by centrifugation
through a Ficoll-Paque (Pharmacia Biotech, Piscataway, N.J.) density
gradient. Infectious cell frequency was measured by inoculation of
serial 10-fold dilutions of PBMC, starting with 106 cells,
into 24-well tissue culture plates containing 105 indicator
C8166 T cells, which were observed for development of syncytial
cytopathic effects during a 7-day period; then cells and supernatant
fluid in 100 µl from each well were transferred to another plate,
fresh indicator cells were added, and observation continued for a
further 7 days (14). Results were expressed as the number of
infectious cells per 106 PBMC. Mesenteric lymph nodes were
obtained from vaccine group 1 at 19 weeks postchallenge, and axillary
nodes were obtained from vaccine group 2 at 18 weeks postchallenge.
Single-cell suspensions were prepared, and infectious cell frequency
was assessed as described for PBMC. Other portions of the biopsy
material were used for analysis of DNA. Inguinal lymph nodes were
obtained later from animals in both groups (between weeks 54 and 60 for
group 1 and weeks 31 and 37 for group 2) and snap-frozen in liquid
nitrogen immediately upon removal. They were stored at
80°C until
processed for RNA analysis.
Fluorescence-activated cell sorting analysis.
PBMC or lymph
node cells were reacted with monoclonal antibody to CD4+ T
or CD8+ T cells (Dako, Carpinteria, Calif.). After washing,
the cells were stained with fluorescein isothiocyanate
(FITC)-conjugated goat anti-mouse immunoglobulin G (Dako), fixed in 1%
buffered formalin, and analyzed on a fluorescence-activated cell
counter (12, 14).
Neutralizing antibody assays.
We performed the test as
described previously (10). Briefly, serial doubling
dilutions of plasma in RPMI medium were prepared in quadruplicate in
96-well plates, 10 to 20 TCID50 of the virus was added to
each well, plates were incubated 1 h at 37°C, and 104 indicator C8166 cells were added to each well. Plates
were observed for cytopathic effect 7 days later, wells were scored
individually, and the 50% neutralization endpoint was calculated by
the Kärber method (15).
Detection of viral DNA in tissues.
Tissues from inoculated
animals were first screened for the presence of the SIV region of
SHIV by PCR using oligonucleotide primers specific for both SIV and
SHIV. Total cellular genomic DNA was extracted from PBMC and/or lymph
nodes of the animals and was used as a template in nested PCR to
amplify SIV gag sequences which were common to both
viruses. The gag-specific oligonucleotides and the
conditions for amplification were exactly as described previously
(14).
PCR techniques were also used to distinguish between the presence
and absence of vaccine and/or challenge viruses in macaque
tissues, using truncated or full-length
vpu as markers of
both
viruses. For the first round of PCR amplification of
vpu genes,
we used oligonucleotide primers
5'-CCTAGACTAGAGCCCTGGAAGCATCC-3'
and
GTACCTCTGTATCATATGCTTTAGCAT-3' (antisense), which are
complementary
to nt 5845 to 5870 and 6393 to 6420 of the HIV-1 (HxB2)
genome,
respectively. One microgram of genomic DNA was used in the PCR
mixture containing 4.0 mM MgCl
2, 200 µM each of the four
deoxynucleoside
triphosphates, 100 pM each oligonucleotide primer, and
2.5 U of
Taq polymerase (Perkin-Elmer Cetus, Norwalk,
Conn.). The template
was denatured at 95°C for 3 min, and PCR
amplification performed
with an automated DNA Thermal Cycler
(Perkin-Elmer Cetus) for
35 cycles of denaturation at 92°C for 1 min,
annealing at 55°C
for 1 min, and primer extension at 72°C for 3 min. Amplification
was completed by incubation of the PCR for 10 min at
72°C. One
microliter of the resultant PCR product was used in a
nested PCR
using the reaction conditions described above. For the
second
round of amplification, we used oligonucleotide primers
5'-TTAGGCATCTCCTATGGCAGGAAGAAG-3'
(sense) and
5'-CACAAAATAGAGTGGTGGTTGCTTCCT-3', which are complementary
to nt 5956 to 5984 and 6386 to 6413 of the HIV-1 HxB2 genome,
respectively. Following the second round of amplification, a 10-µl
aliquot was removed and separated on a 1.5% agarose gel, and bands
were visualized by staining with ethidium bromide. The result
of this
PCR was the amplification of a 397-bp fragment if the
deleted
vpu was present (i.e., the vaccine virus) or a 457-bp
fragment if the intact
vpu was present (i.e., the challenge
virus).
Detection of viral RNA in lymph nodes.
Snap-frozen lymph
nodes were homogenized in Trizol reagent (Gibco-BRL, Gaithersburg,
Md.), by using an Omni-mixer homogenizer (Omni International,
Waterbury, Conn.). Total RNA was isolated as described by the
manufacturer, and the final RNA was dissolved in 50 µl of distilled
H2O per 100 mg of original tissue. The quality of the RNAs
was assessed by reverse transcriptase (RT)-mediated PCR (RT-PCR) for
the cellular gene GAPDH mRNA as described previously (22), using the Titan One-Tube RT-PCR system (Boehringer
Mannheim, Indianapolis, Ind.). The possibility of contaminating DNA in
the RNA preparations was assessed by parallel reactions in which the RT
activity in the reaction was first inactivated by 2 min at 99°C
followed by 3 min at 95°C. If needed, RNase-free DNase (Gibco-BRL) was used to remove residual DNA from the samples, followed by extraction and precipitation. Sample RNAs were amplified by RT-PCR using primers for the SHIV pol gene (corresponding to the
parent SIV sequence): SIVpolA (5'GAAAAGATGGAAAAGGATGG3')
and SIVpolB (5'TGGCTTCTAATGGCTTGC3'). One
microgram of total RNA was used in the one-step reaction containing the
manufacturer's buffer and enzyme mix, appropriate primers, and 1.6 U
of Prime RNase inhibitor (5 Prime
3 Prime, Inc., Boulder, Colo.). The
reactions were performed with a Perkin-Elmer DNA Thermal Cycler 480 with the following thermal profile: 42°C for 30 min, 1 cycle; 94°C for 5 min, 1 cycle; 94°C for 30 s, 55°C for 30 s, and
68°C for 45 s, 10 cycles; 94°C for 30 s, 55°C for
30 s, 68°C for 45 s, with an additional 5-s extension/cycle, 25 cycles; 68°C for 6 min. Nine microliters of the product was loaded
onto an agarose-Tris-borate-EDTA gel containing ethidium bromide, DNA
was separated by electrophoresis, and the gel was photographed. When no
visible product was detected, 1 µl of the initial reaction mixture
was added to a nested PCR mixture containing primers SIVpolC
(5'ACCAATCCATACAACACC3') and SIVpolD
(5'CTGCCCAATTTAATACTCC3'), 3 mM MgCl2, and 1.25 U of Taq enzyme (Sigma, St. Louis, Mo.), and a further 35 cycles were performed with the following thermal profile: 97°C for 1 min 45 s, 55°C for 2 min, and 72°C for 5 min, 1 cycle; 94°C
for 30 s, 55°C for 30 s, 72°C for 45 s, with an
additional 1-s extension/cycle, 33 cycles; 94°C for 30 s, 55°C
for 30 s, and 72°C for 6 min, 1 cycle. The amplified
SIVpolAB fragment is 869 bp, whereas the SIVpolCD nested
fragment is 645 bp. For the detection of multiply spliced mRNAs,
primers spanning the intron of the tat and rev
genes were used (8, 20) without the additional restriction
sites; the second-round primers are heminested, containing one of the
outer primers plus a nested primer. The PCR products of the Msp1 AB primer pair range from 131 to 159 nt, and those for Msp1 CB primer pair
range from 110 to 138 nt. Second-round reactions included 1 M betaine
(Sigma).
Quantitation of plasma RNA viral load.
Plasma samples
collected in acid citrate dextrose from animals in group 1 during weeks
52 and 58 and from group 2 during weeks 27 and 35 were analyzed by a
real-time RT-PCR assay as previously described (28).
Lymphocyte proliferation assay.
PBMC from different
macaques, collected 49 weeks after virus challenge, were cultured in
triplicate at 105 cells/well in 96-well tissue culture
plates in 200 µl of RPMI 1640 containing 10% FBS. Stock
SHIVKU-1 (104.2 TCID50/ml) was UV
irradiated for 30 minutes and heat treated at 56°C for 60 min before
use as antigen; 20 µl of this material was added to each well. Three
wells each containing unstimulated PBMC from different pig-tailed
macaques served as negative controls. Cells were cultured for 6 days
before the addition to each well of 1 µCi of
[3H]thymidine (specific activity, 247.9 GBq/mmol; NEN,
Boston, Mass.). Cultures were harvested onto glass fiber filter mats by
using an automated plate harvester (Skatron, Sterling, Va.) 24 h
after addition of [3H]thymidine, and
[3H]thymidine incorporation was determined with a
Microbeta liquid scintillation counter (Packard). Stimulation index
(SI) was calculated as mean counts per minute in stimulated wells/mean
counts per minute in control well, and an SI of greater than 1.5 was
considered significant (3).
Development of CD4+ T-cell clones.
CD4+ cells from group 1 macaques PDj and PNa (week 50 postchallenge) were negatively selected from PBMC first by incubating PBMC with mouse anti-human CD8 monoclonal antibody and then with anti-mouse immunoglobulin G magnetic beads (Dynal, Lake Success, N.Y.).
Cells enriched for CD4+ T cells were then inoculated with
herpesvirus saimiri (American Type Culture Collection, Manassas, Va.)
to generate immortalized CD4+ T-cell lines (2).
CD4+ T-cell clones were derived by the limiting-dilution
method, and the phenotype was confirmed by staining with mouse
anti-human CD4+ antibody. These CD4+ T cell
clones were inoculated with SHIVKU-1 at a multiplicity of
infection of about 0.1 and used 7 days later as stimulators or targets.
Generation of bulk cytotoxic T-lymphocyte (CTL) population and
chromium release assay.
PDj and PNa PBMC were collected 50 weeks
after virus challenge and cocultured with UV-irradiated
SHIVKU-1-infected autologous CD4+ T cells
(effector/stimulator ratio of 10:1) in 24-well tissue culture plates in
RPMI 1640 containing 10% FBS. They were restimulated on day 7 and used
as effectors on day 14 in a chromium release assay.
Target cells (autologous CD4
+ T-cell clone) were either
infected with SHIV
KU-1 or sham infected for 3 days and then
used in
chromium release assays. Cells were labeled with 100 µCi
51Cr (specific activity, 962 MBq/ml of sodium chromate;
Amersham,
Cleveland, Ohio) for 2 h and then washed thrice with
Hanks balanced
salt solution. Target cells (2,500/well) were dispensed
in triplicate,
and effector cells added in triplicate in
effector/target (E/T)
ratios of 80, 40, 20, 10, and 5 into each well of
96-well U-bottom
plates. Chromium release was determined after 4 h
of incubation
at 37°C in a 5% CO
2 incubator. Plates were
spun at 1,200 rpm for
5 min, and 100 µl of supernatant from each well
was counted in
a gamma counter (Packard, Meriden, Conn.). Each
experiment had
three wells containing only targets and medium which
provided
the data for spontaneous release, while three wells containing
targets and 0.5% sodium dodecyl sulfate served as wells for maximal
release of chromium. The percent specific cytotoxicity was calculated
as (test release

spontaneous release)/(maximum release

spontaneous
release) × 100. Spontaneous lysis of relevant control
target was
always <25% of maximum release.
 |
RESULTS |
Uncoagulated blood samples were collected weekly for the
first month, at 2-week intervals for the next month, and monthly thereafter from all inoculated animals. Fresh plasma was tested for
infectivity, content of p27, viral RNA, and antiviral antibodies. PBMC
were examined for virus content (infectious center assays) and for
CD4+ and CD8+ T-cell markers and were used for
cellular immunity studies.
Vaccine group 1.
Six macaques were inoculated subcutaneously
with 1 ml of tissue culture fluid containing 104
TCID50 of
vpu
nefSHIV-4, and heparinized
blood was collected from all six according to the schedule outlined
above to assess virus replication and host responses. Cocultivation of
106 PBMC of each animal with C8166 cells failed to yield
infectious virus from any of the vaccinated animals at any time point
(Table 1), even after depletion of
CD8+ T cells. However, PCR analysis of PBMC from all six
revealed SIVmac gag DNA sequences, showing
that all six had become infected with the vaccine virus. Proof of
infection was substantiated by immunoprecipitation analysis of plasma
obtained 16 weeks after vaccination. This assay showed that all six had
developed binding antibodies to SIVmac Gag and HIV-1
Env proteins (data not shown). By 19 weeks, all six had developed
neutralizing antibodies at titers of 1:10 and 1:20 to
SHIVKU-1. CD4+ T-cell counts remained normal in
all of the six vaccinated macaques. Thus, although the vaccine virus
caused a persistent infection, there was little evidence of productive
replication of the virus.
At 7 months following vaccination, the six vaccinated macaques and two
unvaccinated controls (PFy and PLy) were inoculated
intravaginally with
1 ml of undiluted SHIV
KU-1 containing 10
4
TCID
50. The inoculation was repeated 5 weeks later to
ensure
adequate exposure of the animals to the challenge virus.
Following
challenge, the two unvaccinated controls developed the same
massive
systemic infection typically caused by SHIV
KU-1 in
pig-tailed
macaques (
9,
11). These control animals developed
infectious
viremia of 10
3 to 10
4
TCID
50/ml and plasma antigenemia with p27 levels of between
1,000
and 2,000 pg/ml during the first 3 weeks postchallenge. As shown
in Table
1, this was accompanied by high numbers of circulating
infectious PBMC. The productive infection was followed by rapid
loss of
more than 90% of CD4
+ T cells within 3 weeks following
exposure to the virus (Table
2). Macaque
PLy developed AIDS approximately 12 weeks after challenge.
The other
animal (PFy) developed an acute infection similar to
that in PLy but
developed a more chronic disease course. It became
progressively
cachectic, and at 58 weeks, when it was euthanized
in extremis, its
viral RNA burden in plasma was 2.9 × 10
6 copies/ml
(Table
3).
The six vaccinated macaques all became infected with
SHIV
KU-1 after challenge, as indicated by PCR analysis of
DNA obtained
from lymph node biopsies. PCR analysis showed evidence of
an open
vpu gene, consistent with that of
SHIV
KU-1 (Fig.
4; Table
4).
However, none of the six
developed the highly productive type
of infection seen in the two
unvaccinated controls and as is typical
of the infection caused by the
SHIV
KU-1. Examination of PBMC from
PDj, PLk, PNa, and PPm
showed that nearly all of the sequentially
collected blood samples
lacked infectious cells. Rarely, low numbers
of infectious PBMC
appeared, but these occurrences were transient.
At 52 weeks, the viral
RNA level in PPm, PDj, and PLk was less
than 600 copies/ml (Table
3).
One blood sample from PNa at week
52 showed infection in 10 cells per
10
6 PBMC, and this was accompanied by a plasma RNA level of
approximately
6,000 copies/ml. Two weeks later, however, infected cells
had
again disappeared from blood samples, and at 58 weeks its viral
RNA
level in plasma was back to <300 copies/ml. Macaques 42105
and 42107 developed a more productive type of infection characterized
by the
persistent presence of small numbers of infectious cells
in PBMC (Table
1), although neither animal developed infectious
viremia or
plasma antigenemia (data not shown). Both animals developed
approximately 50% loss of CD4
+ T cells by 3 weeks
following virus challenge, and this cell count
stabilized at this level
in macaque 42105 (Table
2). However,
in 42107, the cell count underwent
a second period of decline
at approximately 15 weeks, and the animal
developed AIDS at 24
weeks. Macaque 42105 developed better control over
virus replication,
with no evidence of infectious cells in blood
between weeks 26
and 50. However, infectious PBMC reappeared after this
time period.
At 52 weeks postchallenge, when the blood sample had 10 infectious
cells per 10
6 PBMC, the corresponding plasma
sample had approximately 5,000
copies/ml of viral RNA. At 58 weeks, the
plasma had 70,000 copies/ml
(Table
3). Thus, of the six animals that
were vaccinated and
challenged, all became infected with the challenge
virus. One
developed a productive infection and succumbed to AIDS, and
another
remains at risk for developing late-onset disease. Except for
transient sporadic appearances of infectious cells in blood, the
other
four macaques developed total control over replication of
the challenge
virus and have resisted disease.

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FIG. 4.
PCR detection of viral sequences from lymph node
biopsies 19 weeks after challenge of vaccine group 1 with
SHIVKU-1. Lymph node biopsies were performed; DNA was
extracted and used in nested PCR with oligonucleotides that amplified
the vpu gene of SHIVKU-1 as described in the
text. Aliquots of the nested PCR were run on a 1.5% agarose gel and
stained with ethidium bromide. Lanes 1 to 7, amplification of
vpu sequences from lymph node DNA of macaques 42105, 42107, PLk, PPm, PDj, PNa, and PFy, respectively; lane 8, amplification of
vpu sequences from plasmid p3'SHIV (positive control for
full length vpu gene); lane 9, amplification of
vpu sequences from plasmid pDSDvpu (positive control for
truncated vpu gene); lane 10, amplification of
vpu sequences from plasmids p3'SHIV and pDSDvpu; lane 11, amplification of vpu from uninfected PBMC DNA (negative
control).
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TABLE 4.
Infectious cell frequency and PCR analysis of mesenteric
lymph nodes at week 19 postchallenge from vaccine group 1 and PFy and
of axillary lymph nodes at week 18 postchallenge from PDj and
vaccine group 2
|
|
Vaccine group 2.
Since the death of macaque 42107 and the
low-grade persistent infection in macaque 42105 may have been the
result of inadequate immunity resulting from poor replication of
vaccine virus 1, we sought to use another vaccine virus that had the
potential for more robust replication and also one that could be
administered orally. As shown in previous reports, SHIV-4 had become
virulent after sequential passage in macaques (12). Macaque
PPc was the first animal to develop AIDS, and the disease course
correlated with a number of factors, including high replication
efficiency of the virus in CD4+ T cells and macrophages,
infectious viremia, infection in high numbers of circulating PBMC in
peripheral blood, and loss of CD4+ T cells (12).
New genetic changes in the virus included an open, functional
vpu gene and numerous consensus amino acid changes in the
variable and constant regions of the env and nef
genes (17, 25). Since vpu appeared to be
important for pathogenicity, we deleted this gene but used the
env and nef genes of the PPc virus in a new
construct, termed
vpuSHIVPPc (Fig. 3). In
contrast to SHIV-4,
vpuSHIVPPc is
macrophagetropic as a consequence of mutations in the env
genes of SHIVPPc. This property is probably important for
the successful systemic infection that occurs following inoculation of
this virus on mucosal surfaces.
Six macaques were inoculated orally with 10
4
TCID
50 of vaccine 2 in 1 ml of tissue culture medium. The
inoculum was deposited
on both sides of the base of the tongue, aimed
at the pharyngeal
tonsils. As in tests on animals inoculated with
vpu
nefSHIV-4,
we bled the second vaccine group at
indicated intervals and tested
for evidence of virus replication. As
shown in Table
1, all six
animals developed a productive infection in
PBMC by week 2 after
inoculation. This was characterized by the
appearance of infectious
PBMC, although none of the vaccinated animals
developed infectious
viremia or plasma antigenemia. Infection in the
PBMC lasted 6
to 10 weeks, after which productive replication was
brought under
control and virus could no longer be isolated from PBMC
of the
animals, even after depletion of CD8
+ T cells. All
six animals developed immunoprecipitating antibodies
to the Gag of
SIV
mac and Env of HIV-1 (data not shown) and also
neutralizing antibodies at titers of 1:10 to 1:80 to
SHIV
KU-1.
At 24 weeks following immunization, the six vaccinated macaques and two
unvaccinated controls were inoculated intravaginally
with
SHIV
KU-1, and the inoculation was repeated 24 h later.
The
two unvaccinated controls developed the typical massive infection
caused by SHIV
KU-1. Viremia, high numbers of infectious
PBMC,
and more than 90% loss of CD4
+ T cells characterized
the early phase of these infections (Tables
1 and
2). One was
euthanized with AIDS at 12 weeks and the other,
PDb, is still alive in
a cachectic state. Biopsy and examination
of axillary lymph nodes from
five of the six vaccinated macaques
at 18 weeks showed an open
vpu gene in three (Table
4), demonstrating
that the animals
had become infected with SHIV
KU-1. However, as
for the four
macaques in group 1, virus was recovered only rarely
from PBMC of these
vaccinated macaques at any time point. The
animals have remained
healthy and failed to develop virus-associated
loss of CD4
+
T cells during more than 40 weeks of examination. Considerable
menstrual blood loss among these retired breeders, especially
8124, appeared to be associated with the wide fluctuations of
CD4
+ T-cell counts in individuals. Whatever the reason for
loss of
these cells, it was not associated with virus replication
(Tables
1 and
4). Thus, although all six had become infected with virus
crossing the vaginal mucosa and entering the regional lymph nodes,
no
systemic productive viral replication ensued in any of them.
At 27 and
35 weeks postchallenge, plasma RNA levels in the six
vaccinated
macaques were less than 600 and 300 copies/ml, respectively,
whereas
the surviving unvaccinated challenge control animal had
490,000 copies/ml (Table
3).
Because nearly all of the animals receiving either vaccine had
undetectable levels of virus in the plasma, we sought to determine
the
status of virus replication in lymph nodes. Studies of HIV-infected
people have shown that replication-competent virus can be rescued
from
lymph nodes (
4,
6,
29), and active virus replication
can be
demonstrated in lymph nodes with the use of primers for
spliced mRNAs,
even while the plasma has less than 400 copies
of viral RNA/ml
(
8). Since lymph nodes of vaccinated macaques
contained
proviral DNA of the challenge virus, SHIV
KU-1, we
considered
it important to determine whether the virus was inactive
(trapped
in follicular dendritic cells) or was replicating. Lymph node
RNA was prepared from biopsies obtained from all surviving 11
of the 12 vaccinated macaques at weeks 54 and 60 (group 1) and
weeks 31 and 37 (group 2). RT-PCR amplification of lymph node
RNA from the five
vaccinated macaques of group 1, using primers
to the SIV
pol gene, did not reveal detectable SHIV after 35 cycles
despite obvious low-grade infection in PBMC of 42105 (Table
3).
However, the RNA from the lymph node of 42105 was not of good
quality,
as shown by the lack of
GAPDH signal. The one remaining
unvaccinated challenged animal, PFy, showed a strong signal in
the
initial reaction with the outer primers. However, lymph nodes
of four
of the five vaccinated macaques in group 1 did show a
specific signal
upon nested set amplification of 34 further cycles
(Fig.
5A, lanes 6 and 8; Fig.
5C, lanes 2 and
6). In group 2,
again, only the unvaccinated animal showed a signal
upon the initial
RT-PCR (not shown), but five of the six vaccinated
animals (the
exception being 42106) showed a signal upon nested set
amplification
(Fig.
5A, lane 2; Fig.
5B, lanes 2, 4, 6, 8). These
assays detected
full-length mRNAs. Since these could have been viral
RNA in virion
particles trapped in the lymph nodes, we used a different
set
of primers spanning the introns of the
tat and
rev genes to detect
multiply spliced viral mRNAs, indicative
of replication. The two
remaining unvaccinated challenge animals (PFy
and PDb) and 1 of
the 11 vaccinated macaques (macaque 42105 in group 1)
had a detectable
signal with these primers (Fig.
5D, lanes 4 and 2;
data for PDb
not shown). However, nested PCR showed that two other
group 1
animals (PDj and PPm; Fig.
5E, lanes 3 and 5) and three group
2 animals (8124, 42106, and PWv; Fig.
5F, lanes 3, 5, and 9) had
positive
signals (summarized in Table
3). Thus, virus replication,
albeit at an
extremely low level, was still in progress in three
of the five
vaccinated macaques in group 1 and three of the six
in group 2.

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FIG. 5.
RT-PCR detection of full-length viral RNA and spliced
mRNA in lymph nodes. Total RNA was extracted from snap-frozen inguinal
lymph nodes from control and vaccinated animals. RT-PCRs were performed
with 1 µg of total RNA, except as noted; nested or heminested PCRs
were performed with 1 µl from the RT-PCR. (A to C) Nested PCR with
SIVpolCD primers. (A) Macaque 8124, lanes 1 and 2; 42106, lanes 3 and 4; PNa, lanes 5 and 6; PPm, lanes 7 and 8; heated controls in the
RT-PCR step, lanes 1, 3, 5, and 7. (B) PWv, lanes 1 and 2; 7024, lanes
3 and 4; PEy, lanes 5 and 6; PWl, lanes 7 and 8; PDb, lanes 9 and 10;
heated controls, lanes 1, 3, 5, 7, and 9. (C) PLk, lanes 1 and 2; 42105 (5 µg), lanes 3 and 4; PDj, lanes 5 and 6; PFy, lanes 7 and 8; heated
controls, lanes 1, 3, 5, and 7. (D to F) Multiply spliced primers. (D)
RT-PCR with MsplAB primers. PLk, lane 1; 42015, lane 2; PDj, lane 3;
PFy, lane 4; PWv, lane 5; 7024, lane 6; PEy, lane 7; PWl, lane 8; PDb,
lane 9. (E) Heminested reactions with MsplBC primers. Lanes 1 to 9 are
as described for panel D. (F) Heminested reactions with MsplBC primers.
Macaque 8124, lanes 1 to 3 (lanes 1 and 2, 1 µg; lane 3, 5 µg);
42106, lanes 4 and 5; PNa, lanes 6 and 7; PPm, lanes 8 and 9; heated
controls, lanes 1, 4, 6, and 8; reactions with no RNA added to original
RT-PCR step, . Lanes c in all panels represent control reactions with
related KU2 RNA.
|
|
Since virus replication was in progress in the lymphoid tissues but had
been kept in check in 10 of the 12 vaccinated macaques,
we sought to
determine whether the vaccinated macaques had developed
antiviral
cell-mediated immune (CMI) responses. We determined
first whether the
animals had acquired virus-specific T-helper
(Th) cells by using
assays for lymphocyte proliferation after
exposure of PBMC to
virus.
Four of the five macaques in group 1 and all six macaques in group 2 displayed moderate to excellent responses when stimulated
in vitro with
inactivated challenge virus (Table
5),
suggesting
that major histocompatibility complex class II-restricted
antiviral
Th cells may have been expanded in these vaccinated macaques.
The single surviving unvaccinated challenge control animal, PDb,
failed
to prime any virus-specific Th cells, as evidenced by the
inability of
challenge virus to induce an in vitro Th cell expansion.
Of the group 1 vaccinated macaques, only monkey PNa failed to
display any significant
proliferation of T cells in vitro. It
is thus of interest that this
animal, which had DNA of both vaccine
and challenge viruses in its
lymph node (Table
4) and had controlled
virus replication completely,
showed no significant proliferation
of T cells. In contrast, macaque
42105, the only member of the
group that had an ongoing productive
infection, had the highest
SI value. Primed relevant Th cells were
detected in all of the
vaccinated macaques in group 2. While SI values
may not be markers
of resistance to virus replication, they may
contribute to the
development of such resistance.
In addition to performing lymphoproliferation assays, we are also
determining whether the resistant animals had developed
antiviral CTL
and report here on preliminary studies on two vaccinated
macaques. We
took advantage of the fact that not only did the
disease-resistant,
challenged vaccinated macaques have CD4
+ T cells in
peripheral blood that were uninfected with SHIV
KU-1,
but these cells were fully susceptible to infection with this
virus in
culture. We therefore immortalized CD4
+ T cells by
infection with herpesvirus saimiri and obtained clones
which were then
expanded, inoculated with SHIV
KU-1, and used in
autologous
reactions as stimulators and targets. Two animals,
PDj and PNa, from
which we had derived our first T-cell clones,
were selected for study.
PBMC collected at 50 weeks postchallenge
from these two animals were
stimulated with SHIV
KU-1-infected
autologous
CD4
+ T cells at an effector/stimulator ratio of 10:1 and
restimulated
again in the same fashion on day 7. These bulk T-cell
lines were
used as effector cells for detecting CTL activity 2 weeks
after
the first stimulation (Fig.
6).
Both cell populations displayed
excellent cytotoxic activity while
showing no (PNa) or very little
(PDj) lysis against control targets
(Fig.
6).

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FIG. 6.
SHIVKU-1-specific CTL activity in macaques
immunized with vaccine 1 and challenged with SHIVKU-1 at
various E/T ratios. PBMC from macaques PDj (A) and PNa (B) collected 50 weeks postchallenge were stimulated in vitro with
SHIVKU-1-infected, UV-irradiated autologous
CD4+ T cells and used as effectors in a chromium release
assay on day 14. Target cells used in the experiment were autologous
CD4+ T cells either infected with SHIVKU-1
( ) or sham infected ( ) and labeled with 51Cr.
|
|
 |
DISCUSSION |
Six sexually mature macaques inoculated orally on a single
occasion with
vpuSHIVPPc (group 2) developed
an uneventful, transiently productive infection that conferred
protection against AIDS caused by intravaginally inoculated, highly
virulent SHIVKU-1 (
2 test, P = 0.005). All four of the unvaccinated control macaques inoculated intravaginally with this virus developed highly productive infection, subtotal loss of CD4+ T cells, and AIDS,
confirming our identical, previously reported finding (9) on
development of disease in six of six animals that became infected after
nontraumatic intravaginal infusion of this virus. The first vaccine
virus,
vpu
nefSHIV-4, was incapable of causing
infection after mucosal inoculation (and therefore was injected
subcutaneously) and replicated poorly in all six macaques, but
nevertheless induced binding and neutralizing antibodies to the
virus, proving infection. Four of these six vaccinated macaques
resisted productive infection and disease following intravaginal challenge with SHIVKU-1 (
2 test,
P = 0.102). Of the two animals that developed
productive infection, one developed AIDS and another remains at risk
for developing AIDS. Given this prognosis, only 2 of the 12 vaccinated macaques, compared to four of four of the control animals, developed disease (
2 test, P = 0.003). Mechanisms
of vaccine-induced protection among the 10 resistant vaccinated
macaques are still being evaluated, but the purpose of this report is
to illustrate proof of concept that the sexually transmitted disease
caused by HIV-1 in human beings could probably be prevented by
prophylactic immunization.
Both vaccine viruses caused persistent infection irrespective of
whether they replicated productively during the first few weeks
following inoculation. Six months following immunization, even though
infectious virus could no longer be isolated from PBMC from any of the
12 vaccinated macaques, vaccine virus DNA was still detectable. All 12 animals had developed binding and very low neutralizing antibody titers
to SHIVKU-1 in plasma by the time of virus challenge
(approximately 6 months following vaccination). As shown, all 12 became
infected with the challenge virus, since its DNA was clearly
detectable in PBMC or mesenteric lymph node tissue a few months
following challenge. Two of the six vaccinated macaques in group
1 developed a persistent productive infection in PBMC and one, 42107, succumbed to AIDS approximately 6 months following challenge. The
other macaque, 42105, had a phase of low-grade productive infection for
30 weeks followed by a 20-week period when it had no circulating
infectious PBMC in blood. However, from week 50 onward, infectious
PBMC, accompanied by relatively low concentrations of viral RNA (5,000 to 70,000, versus 4 × 105 to 3 × 106 in controls) have reappeared in blood. At 60 weeks
postchallenge, this animal still has large numbers of uninfected
CD4+ T cells (which are highly susceptible to infection),
in contrast to control animals, nearly all of whose CD4+ T
cells became infected and eliminated during the first 3 weeks of
infection. Nevertheless, the resurgence of virus in macaque 42105 suggests that this animal may be at risk for developing late-onset
AIDS.
The other 10 vaccinated macaques, 4 in group 1 and all six in orally
immunized group 2, developed a unique type of control over replication
of SHIVKU-1. Rarely and transiently, small numbers of
infectious cells have appeared in blood, but at nearly all time points,
replication-competent virus could not be isolated from PBMC or lymph
nodes (sampled two to three times during this period of observations)
by any procedure. Attempts have included three successive
cocultivations of CD8-depleted PBMC with mitogen-activated normal
PBMC or T-cell lines. Nevertheless, both viral DNA and viral RNA have
persisted in lymph node tissue. Further, the detection of spliced
viral RNA in lymph nodes of a few animals in both groups suggested that an extremely low level of replication of
SHIVKU-1 has probably been in progress continuously in all
of the vaccinated macaques. This type of replication of this virus had
never been observed before. In our earlier study on pathogenesis of
infection following intravaginal inoculation of SHIVKU-1
(9), we had shown that viral DNA became detectable by day 2 after inoculation in mesenteric lymph nodes and that explosive
replication of the agent occurred during the following week. In this
study, although the intravaginal route of inoculation was shown to be
about 30-fold less sensitive than the intravenous route, all animals
that became infected after intravaginal inoculation nevertheless
developed disease. Extrapolating these data to our vaccinated macaques, since all had developed infection in lymph nodes, we surmised that
systemic rather than mucosal factors were responsible for curtailment
of virus replication.
It is doubtful that neutralizing antibodies had a significant role in
curtailment of virus replication in the vaccinated macaques. In an
earlier report (7), we showed that passively administered immune serum was effective only when given before parenteral
inoculation of the virus. This serum had no therapeutic effect when
given 2 h following virus inoculation. Worse still, unlike the
success at preventing infection after parenteral inoculation of the
virus, we were unable to protect macaques from the dire effects of
infection by infusing the serum 24 h before mucosal inoculation of
the agent (13). Immune serum therefore had no apparent
effect on an already established infection, a well-known phenomenon in
lentivirus infections, nor apparently could the previously administered
serum prevent infection across mucosal surfaces. Restriction of virus
replication in our 10 vaccinated macaques must therefore have been
mediated by factors other than neutralizing antibodies.
Studies on CMI responses of the vaccinated macaques have only recently
begun. That this type of immunity is important came from an earlier
finding that macaques that had "recovered" from infection with
avirulent SIVmac were protected from effects of infection with SHIVKU-1 (24). Since these two
viruses have distinctly different envelopes, the protection was
probably mediated by CMI responses to viral core proteins shared by the
two viruses. In the present study, our findings that CD4+ T
cells in the vaccinated macaques at week 50 in group 1 and in week 30 in group 2 proliferated when exposed to antigens of SHIVKU-1 showed that the animals had developed anti-SHIV
CMI responses that have persisted along with the infection. The further
preliminary finding that 2 of the 10 vaccinated macaques which have
controlled virus replication have developed CTL to the virus has
strengthened the premise that CMI responses are responsible for control
and curtailment of replication of the virulent virus. Possibly, a dynamic interaction between virus replication and CTL curtailment responses is continuously at play. A recent study of CTL responses in
HIV-infected humans showed an inverse correlation between the levels of
CTL and plasma viral RNA loads (19), implicating a role for
CTL control of viral replication and delay of disease progression. We
hope that more complete studies on CMI responses among our vaccinated
macaques, currently in progress, will shed new light on the mechanisms
of curtailment of virus replication in immune animals. However,
although mechanisms of protection against SHIVKU-1 are
still not understood fully, the present study clearly lends support to
the concept that sexually transmitted HIV-1 disease can be averted by
immunization resulting from a single exposure to a live attenuated
vaccine.
 |
ACKNOWLEDGMENTS |
This study was supported by grants AI-38492, AI-40372, RR-06753,
DK-49516, and NS-32203 from the National Institutes of Health and by
BioStratum Inc.
We thank Wu Zhuge for performing immunoprecipitation studies, Sampa
Mukherjee and Manisha Sahni for technical assistance, and Erin
McDonough for help in preparation of the manuscript.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Marion Merrell
Dow Laboratory of Viral Pathogenesis, University of Kansas Medical
Center, 3901 Rainbow Blvd., Kansas City, KS 66160-7424. Phone: (913)
588-5575. Fax: (913) 588-5599. E-mail: bnarayan{at}kumc.edu.
 |
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Journal of Virology, November 1998, p. 9069-9078, Vol. 72, No. 11
0022-538X/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
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