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Journal of Virology, March 2007, p. 2999-3004, Vol. 81, No. 6
0022-538X/07/$08.00+0     doi:10.1128/JVI.02090-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Phylogenetic Analysis of Feline Immunodeficiency Virus in Feral and Companion Domestic Cats of New Zealand{triangledown}

Jessica J. Hayward,1 John Taylor,2 and Allen G. Rodrigo1*

Bioinformatics Institute, Allan Wilson Centre for Molecular Ecology and Evolution,1 School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland Mail Centre, Auckland 1142, New Zealand2

Received 25 September 2006/ Accepted 18 December 2006

Nested PCR was used to amplify envelope V3-V6 gene fragments of feline immunodeficiency virus (FIV) from New Zealand cats. Phylogenetic analyses established that subtypes A and C predominate among New Zealand cats, with clear evidence of intersubtype recombination. In addition, 17 sequences were identified that were distinct from all known FIV clades, and we tentatively suggest these belong to a novel subtype.

* Corresponding author. Mailing address: Bioinformatics Institute, University of Auckland, Private Bag 92019, Auckland Mail Centre, Auckland 1142, New Zealand. Phone: (649) 373 7599, x87296. Fax: (649) 367 7136. E-mail: a.rodrigo{at}auckland.ac.nz.

{triangledown} Published ahead of print on 27 December 2006.

Journal of Virology, March 2007, p. 2999-3004, Vol. 81, No. 6
0022-538X/07/$08.00+0     doi:10.1128/JVI.02090-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.





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