Journal of Virology, November 2001, p. 10612-10622, Vol. 75, No. 22
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.22.10612-10622.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
1 Ribosomal
Frameshift Elements in Giardiavirus mRNA
Department of Pharmaceutical Chemistry, School of Pharmacy, University of California San Francisco, San Francisco, California 94143-0446
Received 11 May 2001/Accepted 13 August 2001
The RNA polymerase of giardiavirus (GLV) is synthesized as a fusion
protein through a
1 ribosomal frameshift in a region where
gag and pol open reading frames (ORFs) overlap.
A heptamer, CCCUUUA, and a potential pseudoknot found in the
overlap were predicted to be required for the frameshift. A
68-nucleotide (nt) cDNA fragment containing these elements was inserted
between the GLV 5' 631-nt cDNA and the out-of-frame luciferase gene
that required a
1 frameshift within the 68-nt fragment for
expression. Giardia lamblia trophozoites transfected with
the transcript of this construct showed a frameshift frequency at
1.7%, coinciding with the polymerase-to-capsid protein ratio in GLV.
The heptamer is required for the frameshift but can be replaced with
other sequences of the same motif. Mutations placing stop codons in the
0 or
1 frame, located directly before or after the heptamer,
implicated the latter as the site for the
1 frameshift. Shortening or
destroying the putative stem decreased the frameshift efficiency
threefold; the efficiency was fully recovered by mutations to restore
the stem. Deleting 18 nt from the 3' end of the 68-nt fragment, which
formed the second stem in the putative pseudoknot, had no effect on the
frequency of the frameshift. Chemical probing of the RNA secondary
structure in the frameshift region showed that bases resistant to
chemical modification were clustered in the putative stem structures,
thus confirming the presence of the postulated stem-loop, while all the
bases in the loop were chemically modified, thus ruling out their
capability of forming a pseudoknot. These results confirmed the
conclusion based on data from the mutation study that there is but a
simple stem-loop downstream from the heptamer. Together, they
constitute the structural elements for a
1 ribosomal frameshift in
the GLV transcript.
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