Previous Article | Next Article 
Journal of Virology, August 2001, p. 7059-7066, Vol. 75, No. 15
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.15.7059-7066.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
DNA Microarray Analysis of Chimpanzee Liver during
Acute Resolving Hepatitis C Virus Infection
Catherine B.
Bigger,1
Kathleen M.
Brasky,2 and
Robert E.
Lanford1,*
Department of Virology and
Immunology1 and Department of Laboratory
Animal Medicine,2 Southwest Regional Primate
Research Center, Southwest Foundation for Biomedical Research, San
Antonio, Texas 78227
Received 21 February 2001/Accepted 25 April 2001
Hepatitis C virus (HCV) poses a worldwide health problem in that
the majority of individuals exposed to HCV become chronically infected
and are predisposed for developing significant liver disease. DNA
microarray technology provides an opportunity to survey transcription
modulation in the context of an infectious disease and is a
particularly attractive approach in characterizing HCV-host
interactions, since the mechanisms underlying viral persistence and
disease progression are not understood and are difficult to study.
Here, we describe the changes in liver gene expression during the
course of an acute-resolving HCV infection in a chimpanzee. Clearance
of viremia in this animal occurred between weeks 6 and 8, while
clearance of residual infected hepatocytes did not occur until 14 weeks
postinfection. The most notable changes in gene expression occurred in
numerous interferon response genes (including all three classical
interferon antiviral pathways) that increased dramatically, some as
early as day 2 postinfection. The data suggest a biphasic mechanism of
viral clearance dependent on both the innate and adaptive immune
responses and provide insight into the response of the liver to a
hepatotropic viral infection.
*
Corresponding author. Mailing address: 7620 NW Loop
410, San Antonio, TX 78227. Phone: (210) 258-9445. Fax: (210) 670-3329. E-mail: rlanford{at}icarus.sfbr.org.
Journal of Virology, August 2001, p. 7059-7066, Vol. 75, No. 15
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.15.7059-7066.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
This article has been cited by other articles:
-
Lu, Y., Huggins, P., Bar-Joseph, Z.
(2009). Cross species analysis of microarray expression data. Bioinformatics
25: 1476-1483
[Abstract]
[Full Text]
-
Guo, H., Jiang, D., Ma, D., Chang, J., Dougherty, A. M., Cuconati, A., Block, T. M., Guo, J.-T.
(2009). Activation of Pattern Recognition Receptor-Mediated Innate Immunity Inhibits the Replication of Hepatitis B Virus in Human Hepatocyte-Derived Cells. J. Virol.
83: 847-858
[Abstract]
[Full Text]
-
Shin, E.-C., Capone, S., Cortese, R., Colloca, S., Nicosia, A., Folgori, A., Rehermann, B.
(2008). The Kinetics of Hepatitis C Virus-Specific CD8 T-Cell Responses in the Blood Mirror Those in the Liver in Acute Hepatitis C Virus Infection. J. Virol.
82: 9782-9788
[Abstract]
[Full Text]
-
Sarasin-Filipowicz, M., Oakeley, E. J., Duong, F. H. T., Christen, V., Terracciano, L., Filipowicz, W., Heim, M. H.
(2008). Interferon signaling and treatment outcome in chronic hepatitis C. Proc. Natl. Acad. Sci. USA
105: 7034-7039
[Abstract]
[Full Text]
-
Jiang, D., Guo, H., Xu, C., Chang, J., Gu, B., Wang, L., Block, T. M., Guo, J.-T.
(2008). Identification of Three Interferon-Inducible Cellular Enzymes That Inhibit the Replication of Hepatitis C Virus. J. Virol.
82: 1665-1678
[Abstract]
[Full Text]
-
Tasaka, M., Sakamoto, N., Itakura, Y., Nakagawa, M., Itsui, Y., Sekine-Osajima, Y., Nishimura-Sakurai, Y., Chen, C.-H., Yoneyama, M., Fujita, T., Wakita, T., Maekawa, S., Enomoto, N., Watanabe, M.
(2007). Hepatitis C virus non-structural proteins responsible for suppression of the RIG-I/Cardif-induced interferon response. J. Gen. Virol.
88: 3323-3333
[Abstract]
[Full Text]
-
Kanda, T., Steele, R., Ray, R., Ray, R. B.
(2007). Hepatitis C Virus Infection Induces the Beta Interferon Signaling Pathway in Immortalized Human Hepatocytes. J. Virol.
81: 12375-12381
[Abstract]
[Full Text]
-
Gottwein, J. M., Bukh, J.
(2007). Hepatitis C virus host cell interactions uncovered. Proc. Natl. Acad. Sci. USA
104: 13215-13216
[Full Text]
-
Holzinger, D., Jorns, C., Stertz, S., Boisson-Dupuis, S., Thimme, R., Weidmann, M., Casanova, J.-L., Haller, O., Kochs, G.
(2007). Induction of MxA Gene Expression by Influenza A Virus Requires Type I or Type III Interferon Signaling. J. Virol.
81: 7776-7785
[Abstract]
[Full Text]
-
Dogra, N., Warburton, C., McMaster, W. R.
(2007). Leishmania major Abrogates Gamma Interferon-Induced Gene Expression in Human Macrophages from a Global Perspective. Infect. Immun.
75: 3506-3515
[Abstract]
[Full Text]
-
Oshlack, A., Chabot, A. E., Smyth, G. K., Gilad, Y.
(2007). Using DNA microarrays to study gene expression in closely related species. Bioinformatics
23: 1235-1242
[Abstract]
[Full Text]
-
Ciccaglione, A. R., Stellacci, E., Marcantonio, C., Muto, V., Equestre, M., Marsili, G., Rapicetta, M., Battistini, A.
(2007). Repression of Interferon Regulatory Factor 1 by Hepatitis C Virus Core Protein Results in Inhibition of Antiviral and Immunomodulatory Genes. J. Virol.
81: 202-214
[Abstract]
[Full Text]
-
Zhong, J., Gastaminza, P., Chung, J., Stamataki, Z., Isogawa, M., Cheng, G., McKeating, J. A., Chisari, F. V.
(2006). Persistent Hepatitis C Virus Infection In Vitro: Coevolution of Virus and Host. J. Virol.
80: 11082-11093
[Abstract]
[Full Text]
-
Dolganiuc, A., Chang, S., Kodys, K., Mandrekar, P., Bakis, G., Cormier, M., Szabo, G.
(2006). Hepatitis C Virus (HCV) Core Protein-Induced, Monocyte-Mediated Mechanisms of Reduced IFN-{alpha} and Plasmacytoid Dendritic Cell Loss in Chronic HCV Infection. J. Immunol.
177: 6758-6768
[Abstract]
[Full Text]
-
Ajuebor, M. N., Carey, J. A., Swain, M. G.
(2006). CCR5 in T Cell-Mediated Liver Diseases: What's Going On?. J. Immunol.
177: 2039-2045
[Abstract]
[Full Text]
-
Chang, K.-S., Cai, Z., Zhang, C., Sen, G. C., Williams, B. R. G., Luo, G.
(2006). Replication of Hepatitis C Virus (HCV) RNA in Mouse Embryonic Fibroblasts: Protein Kinase R (PKR)-Dependent and PKR-Independent Mechanisms for Controlling HCV RNA Replication and Mediating Interferon Activities.. J. Virol.
80: 7364-7374
[Abstract]
[Full Text]
-
Bertoletti, A., Gehring, A. J.
(2006). The immune response during hepatitis B virus infection. J. Gen. Virol.
87: 1439-1449
[Abstract]
[Full Text]
-
Lua, D. T., Yasuike, M., Hirono, I., Aoki, T.
(2005). Transcription Program of Red Sea Bream Iridovirus as Revealed by DNA Microarrays. J. Virol.
79: 15151-15164
[Abstract]
[Full Text]
-
Freundt, E. C., Lenardo, M. J.
(2005). Interfering with interferons: Hepatitis C virus counters innate immunity. Proc. Natl. Acad. Sci. USA
102: 17539-17540
[Full Text]
-
Edwards, M. J., Buchatska, O., Ashton, M., Montoya, M., Bickle, Q. D., Borrow, P.
(2005). Reciprocal Immunomodulation in a Schistosome and Hepatotropic Virus Coinfection Model. J. Immunol.
175: 6275-6285
[Abstract]
[Full Text]
-
Sun, J., Tumurbaatar, B., Jia, J., Diao, H., Bodola, F., Lemon, S. M., Tang, W., Bowen, D. G., McCaughan, G. W., Bertolino, P., Chan, T.-S.
(2005). Parenchymal Expression of CD86/B7.2 Contributes to Hepatitis C Virus-Related Liver Injury. J. Virol.
79: 10730-10739
[Abstract]
[Full Text]
-
Butera, D., Marukian, S., Iwamaye, A. E., Hembrador, E., Chambers, T. J., Di Bisceglie, A. M., Charles, E. D., Talal, A. H., Jacobson, I. M., Rice, C. M., Dustin, L. B.
(2005). Plasma chemokine levels correlate with the outcome of antiviral therapy in patients with hepatitis C. Blood
106: 1175-1182
[Abstract]
[Full Text]
-
Dowling, R. J. O., Bienzle, D.
(2005). Gene-expression changes induced by Feline immunodeficiency virus infection differ in epithelial cells and lymphocytes. J. Gen. Virol.
86: 2239-2248
[Abstract]
[Full Text]
-
Wieland, S. F., Chisari, F. V.
(2005). Stealth and Cunning: Hepatitis B and Hepatitis C Viruses. J. Virol.
79: 9369-9380
[Full Text]
-
Chan, M. M., Lu, X., Merchant, F. M., Iglehart, J.D., Miron, P. L.
(2005). Gene expression profiling of NMU-induced rat mammary tumors: cross species comparison with human breast cancer. Carcinogenesis
26: 1343-1353
[Abstract]
[Full Text]
-
Sumpter, R. Jr., Loo, Y.-M., Foy, E., Li, K., Yoneyama, M., Fujita, T., Lemon, S. M., Gale, M. Jr.
(2005). Regulating Intracellular Antiviral Defense and Permissiveness to Hepatitis C Virus RNA Replication through a Cellular RNA Helicase, RIG-I. J. Virol.
79: 2689-2699
[Abstract]
[Full Text]
-
Li, K., Foy, E., Ferreon, J. C., Nakamura, M., Ferreon, A. C. M., Ikeda, M., Ray, S. C., Gale, M. Jr., Lemon, S. M.
(2005). Immune evasion by hepatitis C virus NS3/4A protease-mediated cleavage of the Toll-like receptor 3 adaptor protein TRIF. Proc. Natl. Acad. Sci. USA
102: 2992-2997
[Abstract]
[Full Text]
-
Bigger, C. B., Guerra, B., Brasky, K. M., Hubbard, G., Beard, M. R., Luxon, B. A., Lemon, S. M., Lanford, R. E.
(2004). Intrahepatic Gene Expression during Chronic Hepatitis C Virus Infection in Chimpanzees. J. Virol.
78: 13779-13792
[Abstract]
[Full Text]
-
Sumpter, R. Jr., Wang, C., Foy, E., Loo, Y.-M., Gale, M. Jr.
(2004). Viral Evolution and Interferon Resistance of Hepatitis C Virus RNA Replication in a Cell Culture Model. J. Virol.
78: 11591-11604
[Abstract]
[Full Text]
-
Ahmad, A., Alvarez, F.
(2004). Role of NK and NKT cells in the immunopathogenesis of HCV-induced hepatitis. J. Leukoc. Biol.
76: 743-759
[Abstract]
[Full Text]
-
Kanazawa, N., Kurosaki, M., Sakamoto, N., Enomoto, N., Itsui, Y., Yamashiro, T., Tanabe, Y., Maekawa, S., Nakagawa, M., Chen, C.-H., Kakinuma, S., Oshima, S., Nakamura, T., Kato, T., Wakita, T., Watanabe, M.
(2004). Regulation of Hepatitis C Virus Replication by Interferon Regulatory Factor 1. J. Virol.
78: 9713-9720
[Abstract]
[Full Text]
-
McLaren, P. J., Mayne, M., Rosser, S., Moffatt, T., Becker, K. G., Plummer, F. A., Fowke, K. R.
(2004). Antigen-Specific Gene Expression Profiles of Peripheral Blood Mononuclear Cells Do Not Reflect Those of T-Lymphocyte Subsets. CVI
11: 977-982
[Abstract]
[Full Text]
-
Huff, J. L., Hansen, L. M., Solnick, J. V.
(2004). Gastric Transcription Profile of Helicobacter pylori Infection in the Rhesus Macaque. Infect. Immun.
72: 5216-5226
[Abstract]
[Full Text]
-
Khakoo, S. I., Thio, C. L., Martin, M. P., Brooks, C. R., Gao, X., Astemborski, J., Cheng, J., Goedert, J. J., Vlahov, D., Hilgartner, M., Cox, S., Little, A.-M., Alexander, G. J., Cramp, M. E., O'Brien, S. J., Rosenberg, W. M. C., Thomas, D. L., Carrington, M.
(2004). HLA and NK Cell Inhibitory Receptor Genes in Resolving Hepatitis C Virus Infection. Science
305: 872-874
[Abstract]
[Full Text]
-
Wieland, S., Thimme, R., Purcell, R. H., Chisari, F. V.
(2004). Genomic analysis of the host response to hepatitis B virus infection. Proc. Natl. Acad. Sci. USA
101: 6669-6674
[Abstract]
[Full Text]
-
Nagpal, S., Karaman, M. W., Timmerman, M. M., Ho, V. V., Pike, B. L., Hacia, J. G.
(2004). Improving the sensitivity and specificity of gene expression analysis in highly related organisms through the use of electronic masks. Nucleic Acids Res
32: e51-e51
[Abstract]
[Full Text]
-
Bocharov, G., Ludewig, B., Bertoletti, A., Klenerman, P., Junt, T., Krebs, P., Luzyanina, T., Fraser, C., Anderson, R. M.
(2004). Underwhelming the Immune Response: Effect of Slow Virus Growth on CD8+-T-Lymphocyte Responses. J. Virol.
78: 2247-2254
[Abstract]
[Full Text]
-
Lanford, R. E., Guerra, B., Chavez, D., Bigger, C., Brasky, K. M., Wang, X.-H., Ray, S. C., Thomas, D. L.
(2004). Cross-Genotype Immunity to Hepatitis C Virus. J. Virol.
78: 1575-1581
[Abstract]
[Full Text]
-
Miyahara, T., Kikuchi, T., Akimoto, M., Kurokawa, T., Shibuki, H., Yoshimura, N.
(2003). Gene Microarray Analysis of Experimental Glaucomatous Retina from Cynomologous Monkey. IOVS
44: 4347-4356
[Abstract]
[Full Text]
-
DeBiasi, R. L., Clarke, P., Meintzer, S., Jotte, R., Kleinschmidt-Demasters, B. K., Johnson, G. L., Tyler, K. L.
(2003). Reovirus-Induced Alteration in Expression of Apoptosis and DNA Repair Genes with Potential Roles in Viral Pathogenesis. J. Virol.
77: 8934-8947
[Abstract]
[Full Text]
-
Candotti, D., Temple, J., Sarkodie, F., Allain, J.-P.
(2003). Frequent Recovery and Broad Genotype 2 Diversity Characterize Hepatitis C Virus Infection in Ghana, West Africa. J. Virol.
77: 7914-7923
[Abstract]
[Full Text]
-
Karaman, M. W., Houck, M. L., Chemnick, L. G., Nagpal, S., Chawannakul, D., Sudano, D., Pike, B. L., Ho, V. V., Ryder, O. A., Hacia, J. G.
(2003). Comparative Analysis of Gene-Expression Patterns in Human and African Great Ape Cultured Fibroblasts. Genome Res
13: 1619-1630
[Abstract]
[Full Text]
-
Natarajan, K., Rajala, M. S., Chodosh, J.
(2003). Corneal IL-8 Expression Following Adenovirus Infection Is Mediated by c-Src Activation in Human Corneal Fibroblasts. J. Immunol.
170: 6234-6243
[Abstract]
[Full Text]
-
Roberts, E. S., Zandonatti, M. A., Watry, D. D., Madden, L. J., Henriksen, S. J., Taffe, M. A., Fox, H. S.
(2003). Induction of Pathogenic Sets of Genes in Macrophages and Neurons in NeuroAIDS. Am. J. Pathol.
162: 2041-2057
[Abstract]
[Full Text]
-
Munir, S., Kapur, V.
(2003). Regulation of Host Cell Transcriptional Physiology by the Avian Pneumovirus Provides Key Insights into Host-Pathogen Interactions. J. Virol.
77: 4899-4910
[Abstract]
[Full Text]
-
Kim, J. W., Wang, X. W.
(2003). Gene expression profiling of preneoplastic liver disease and liver cancer: a new era for improved early detection and treatment of these deadly diseases?. Carcinogenesis
24: 363-369
[Abstract]
[Full Text]
-
Lanford, R. E., Guerra, B., Lee, H., Averett, D. R., Pfeiffer, B., Chavez, D., Notvall, L., Bigger, C.
(2002). Antiviral Effect and Virus-Host Interactions in Response to Alpha Interferon, Gamma Interferon, Poly(I)-Poly(C), Tumor Necrosis Factor Alpha, and Ribavirin in Hepatitis C Virus Subgenomic Replicons. J. Virol.
77: 1092-1104
[Abstract]
[Full Text]
-
Su, A. I., Pezacki, J. P., Wodicka, L., Brideau, A. D., Supekova, L., Thimme, R., Wieland, S., Bukh, J., Purcell, R. H., Schultz, P. G., Chisari, F. V.
(2002). Genomic analysis of the host response to hepatitis C virus infection. Proc. Natl. Acad. Sci. USA
99: 15669-15674
[Abstract]
[Full Text]
-
Cheney, I. W., Lai, V. C. H., Zhong, W., Brodhag, T., Dempsey, S., Lim, C., Hong, Z., Lau, J. Y. N., Tam, R. C.
(2002). Comparative Analysis of Anti-Hepatitis C Virus Activity and Gene Expression Mediated by Alpha, Beta, and Gamma Interferons. J. Virol.
76: 11148-11154
[Abstract]
[Full Text]
-
O'Farrell, C., Vaghefi, N., Cantonnet, M., Buteau, B., Boudinot, P., Benmansour, A.
(2002). Survey of Transcript Expression in Rainbow Trout Leukocytes Reveals a Major Contribution of Interferon-Responsive Genes in the Early Response to a Rhabdovirus Infection. J. Virol.
76: 8040-8049
[Abstract]
[Full Text]
-
de Avalos, S. V., Blader, I. J., Fisher, M., Boothroyd, J. C., Burleigh, B. A.
(2002). Immediate/Early Response to Trypanosoma cruzi Infection Involves Minimal Modulation of Host Cell Transcription. J. Biol. Chem.
277: 639-644
[Abstract]
[Full Text]
-
Samuel, C. E.
(2001). Antiviral Actions of Interferons. Clin. Microbiol. Rev.
14: 778-809
[Abstract]
[Full Text]