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Journal of Virology, January 2001, p. 36-44, Vol. 75, No. 1
Department of Microbiology, University of
Alabama at Birmingham, Birmingham, Alabama
Received 1 August 2000/Accepted 3 October 2000
RNA signals at the ends of the genes of respiratory syncytial (RS)
virus direct polyadenylation and termination of viral transcription. These gene ends contain two conserved regions, a pentanucleotide and a
tract of uridylate (U) residues, separated by an A/U-rich central
region that is less well conserved. The U tract is thought to be the
template for polyadenylation of viral mRNAs by reiterative transcription. The cis-acting requirements for termination
were investigated by mutagenesis of the matrix (M) gene end
(3'-UCAAUUAUUUUUU-5') in a dicistronic RNA replicon.
Termination efficiencies were quantitated by intracellular metabolic
labeling of monocistronic mRNAs and the dicistronic readthrough RNAs
that result when termination fails to occur. All three regions of the
gene end were necessary for termination. Mutation of each of the first
8 nucleotides of the M gene end to all other nucleotides showed that
nucleotides 2 to 6 were important for termination and intolerant of
change, whereas nucleotides 1 and 7 were tolerant of change. At
position 8, A or U allowed termination, but G or C did not. Both the
length and the position of the U tract were important for termination. U residues at positions 9 to 12 were necessary, while additional U
residues at position 8, and especially position 13, enhanced termination efficiency. Altering the length of the central region abolished termination, suggesting that the position of the U tract with
respect to the 3'-UCAAU-5' sequence was critical. The termination efficiencies of each of the 10 genes of RS virus are different. Since
transcription is obligatorily sequential and termination of each gene
is required for transcription of the next gene downstream, these
differences may contribute to gene regulation. In agreement with our
data, the naturally occurring gene ends of RS virus that terminate
inefficiently have short U tracts or other sequence features that
correlated with decreased termination when similar mutations were
analyzed in RNA replicons.
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.1.36-44.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
RNA Sequences Involved in Transcriptional
Termination of Respiratory Syncytial Virus
*
Corresponding author. Mailing address: Department of
Microbiology, University of Alabama School of Medicine, BBRB 366/17, 845 19th St. South, Birmingham, AL 35294. Phone: (205) 934-0877. Fax:
(205) 934-1636. E-mail: gail_wertz{at}microbio.uab.edu.
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