Previous Article | Next Article 
Journal of Virology, October 2000, p. 9144-9151, Vol. 74, No. 19
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Putative Immunodominant Human Immunodeficiency Virus-Specific
CD8+ T-Cell Responses Cannot Be Predicted by Major
Histocompatibility Complex Class I Haplotype
Michael R.
Betts,1
Joseph P.
Casazza,1
Brent A.
Patterson,1
Shar
Waldrop,2
Wendy
Trigona,3
Tong-Ming
Fu,3
Florian
Kern,4
Louis J.
Picker,2 and
Richard
A.
Koup1,*
Department of Internal Medicine, Division of
Infectious Diseases, The University of Texas Southwestern Medical
Center, Dallas, Texas 753901; Vaccine
and Gene Therapy Institute, Oregon Health Sciences University,
Portland, Oregon 97201-30982; Merck
Research Laboratories, West Point, Pennsylvania
194863; and Institute for Medical
Immunology, Charité, Humboldt Universität zu Berlin, 10098 Berlin, Germany4
Received 25 April 2000/Accepted 26 June 2000
Recent studies of human immunodeficiency virus (HIV)-specific
CD8+ T cells have focused on responses to single, usually
HLA-A2-restricted epitopes as surrogate measures of the overall
response to HIV. However, the assumption that a response to one epitope
is representative of the total response is unconfirmed. Here we assess
epitope immunodominance and HIV-specific CD8+ T-cell
response complexity using cytokine flow cytometry to examine CD8+ T-cell responses in 11 HLA-A2+
HIV+ individuals. Initial studies demonstrated that only 4 of 11 patients recognized the putative immunodominant HLA-A2-restricted
p17 epitope SLYNTVATL, suggesting that the remaining subjects might
lack significant HIV-specific CD8+ T-cell responses.
However, five of six SLYNTVATL nonresponders recognized other HIV
epitopes, and two of four SLYNTVATL responders had greater responses to
HIV peptides restricted by other class I alleles. In several
individuals, no HLA-A2-restricted epitopes were recognized, but
CD8+ T-cell responses were detected to epitopes restricted
by other HLA class I alleles. These data indicate that an individual's overall CD8+ T-cell response to HIV is not adequately
represented by the response to a single epitope and that individual
major histocompatibility complex class I alleles do not predict an
immunodominant response restricted by that allele. Accurate
quantification of total HIV-specific CD8+ T-cell responses
will require assessment of the response to all possible epitopes.
*
Corresponding author. Mailing address: Department of
Internal Medicine, University of Texas Southwestern Medical Center,
Dallas, TX 75390-9113. Phone: (214) 648-2807. Fax: (214) 648-2431. E-mail: richard.koup{at}emailswmed.edu.
Journal of Virology, October 2000, p. 9144-9151, Vol. 74, No. 19
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
This article has been cited by other articles:
-
Babel, N., Brestrich, G., Gondek, L. P., Sattler, A., Wlodarski, M. W., Poliak, N., Bethke, N., Thiel, A., Hammer, M. H., Reinke, P., Maciejewski, J. P.
(2009). Clonotype Analysis of Cytomegalovirus-Specific Cytotoxic T Lymphocytes. J. Am. Soc. Nephrol.
20: 344-352
[Abstract]
[Full Text]
-
Weichsel, R., Dix, C., Wooldridge, L., Clement, M., Fenton-May, A., Sewell, A. K., Zezula, J., Greiner, E., Gostick, E., Price, D. A., Einsele, H., Seggewiss, R.
(2008). Profound Inhibition of Antigen-Specific T-Cell Effector Functions by Dasatinib. Clin. Cancer Res.
14: 2484-2491
[Abstract]
[Full Text]
-
Karlsson, A. C., Chapman, J. M., Heiken, B. D., Hoh, R., Kallas, E. G., Martin, J. N., Hecht, F. M., Deeks, S. G., Nixon, D. F.
(2007). Antiretroviral Drug Therapy Alters the Profile of Human Immunodeficiency Virus Type 1-Specific T-Cell Responses and Shifts the Immunodominant Cytotoxic T-Lymphocyte Response from Gag to Pol. J. Virol.
81: 11543-11548
[Abstract]
[Full Text]
-
Precopio, M. L., Betts, M. R., Parrino, J., Price, D. A., Gostick, E., Ambrozak, D. R., Asher, T. E., Douek, D. C., Harari, A., Pantaleo, G., Bailer, R., Graham, B. S., Roederer, M., Koup, R. A.
(2007). Immunization with vaccinia virus induces polyfunctional and phenotypically distinctive CD8+ T cell responses. JEM
204: 1405-1416
[Abstract]
[Full Text]
-
Malhotra, U., Li, F., Nolin, J., Allison, M., Zhao, H., Mullins, J. I., Self, S., McElrath, M. J.
(2007). Enhanced Detection of Human Immunodeficiency Virus Type 1 (HIV-1) Nef-Specific T Cells Recognizing Multiple Variants in Early HIV-1 Infection. J. Virol.
81: 5225-5237
[Abstract]
[Full Text]
-
Brenchley, J. M., Ruff, L. E., Casazza, J. P., Koup, R. A., Price, D. A., Douek, D. C.
(2006). Preferential Infection Shortens the Life Span of Human Immunodeficiency Virus-Specific CD4+ T Cells In Vivo. J. Virol.
80: 6801-6809
[Abstract]
[Full Text]
-
Korthals Altes, H., de Boer, R., Boerlijst, M.
(2006). Role of avidity and breadth of the CD4 T cell response in progression to AIDS. Proc R Soc B
273: 1697-1704
[Abstract]
[Full Text]
-
Yang, O. O., Church, J., Kitchen, C. M. R., Kilpatrick, R., Ali, A., Geng, Y., Killian, M. S., Sabado, R. L., Ng, H., Suen, J., Bryson, Y., Jamieson, B. D., Krogstad, P.
(2005). Genetic and Stochastic Influences on the Interaction of Human Immunodeficiency Virus Type 1 and Cytotoxic T Lymphocytes in Identical Twins. J. Virol.
79: 15368-15375
[Abstract]
[Full Text]
-
Emu, B., Sinclair, E., Favre, D., Moretto, W. J., Hsue, P., Hoh, R., Martin, J. N., Nixon, D. F., McCune, J. M., Deeks, S. G.
(2005). Phenotypic, Functional, and Kinetic Parameters Associated with Apparent T-Cell Control of Human Immunodeficiency Virus Replication in Individuals with and without Antiretroviral Treatment. J. Virol.
79: 14169-14178
[Abstract]
[Full Text]
-
Goletti, D., Vincenti, D., Carrara, S., Butera, O., Bizzoni, F., Bernardini, G., Amicosante, M., Girardi, E.
(2005). Selected RD1 Peptides for Active Tuberculosis Diagnosis: Comparison of a Gamma Interferon Whole-Blood Enzyme-Linked Immunosorbent Assay and an Enzyme-Linked Immunospot Assay. CVI
12: 1311-1316
[Abstract]
[Full Text]
-
Seggewiss, R., Lore, K., Greiner, E., Magnusson, M. K., Price, D. A., Douek, D. C., Dunbar, C. E., Wiestner, A.
(2005). Imatinib inhibits T-cell receptor-mediated T-cell proliferation and activation in a dose-dependent manner. Blood
105: 2473-2479
[Abstract]
[Full Text]
-
Chang, J. J., Wightman, F., Bartholomeusz, A., Ayres, A., Kent, S. J., Sasadeusz, J., Lewin, S. R.
(2005). Reduced Hepatitis B Virus (HBV)-Specific CD4+ T-Cell Responses in Human Immunodeficiency Virus Type 1-HBV-Coinfected Individuals Receiving HBV-Active Antiretroviral Therapy. J. Virol.
79: 3038-3051
[Abstract]
[Full Text]
-
Kim, A. Y., Lauer, G. M., Ouchi, K., Addo, M. M., Lucas, M., Wiesch, J. S. z., Timm, J., Boczanowski, M., Duncan, J. E., Wurcel, A. G., Casson, D., Chung, R. T., Draenert, R., Klenerman, P., Walker, B. D.
(2005). The magnitude and breadth of hepatitis C virus-specific CD8+ T cells depend on absolute CD4+ T-cell count in individuals coinfected with HIV-1. Blood
105: 1170-1178
[Abstract]
[Full Text]
-
Varela-Calvino, R., Skowera, A., Arif, S., Peakman, M.
(2004). Identification of a Naturally Processed Cytotoxic CD8 T-Cell Epitope of Coxsackievirus B4, Presented by HLA-A2.1 and Located in the PEVKEK Region of the P2C Nonstructural Protein. J. Virol.
78: 13399-13408
[Abstract]
[Full Text]
-
Pelte, C., Cherepnev, G., Wang, Y., Schoenemann, C., Volk, H.-D., Kern, F.
(2004). Random Screening of Proteins for HLA-A*0201-Binding Nine-Amino Acid Peptides Is Not Sufficient for Identifying CD8 T Cell Epitopes Recognized in the Context of HLA-A*0201. J. Immunol.
172: 6783-6789
[Abstract]
[Full Text]
-
Crawford, M. P., Yan, S. X., Ortega, S. B., Mehta, R. S., Hewitt, R. E., Price, D. A., Stastny, P., Douek, D. C., Koup, R. A., Racke, M. K., Karandikar, N. J.
(2004). High prevalence of autoreactive, neuroantigen-specific CD8+ T cells in multiple sclerosis revealed by novel flow cytometric assay. Blood
103: 4222-4231
[Abstract]
[Full Text]
-
Betts, M. R., Price, D. A., Brenchley, J. M., Lore, K., Guenaga, F. J., Smed-Sorensen, A., Ambrozak, D. R., Migueles, S. A., Connors, M., Roederer, M., Douek, D. C., Koup, R. A.
(2004). The Functional Profile of Primary Human Antiviral CD8+ T Cell Effector Activity Is Dictated by Cognate Peptide Concentration. J. Immunol.
172: 6407-6417
[Abstract]
[Full Text]
-
Boon, A. C. M., de Mutsert, G., Fouchier, R. A. M., Sintnicolaas, K., Osterhaus, A. D. M. E., Rimmelzwaan, G. F.
(2004). Preferential HLA Usage in the Influenza Virus-Specific CTL Response. J. Immunol.
172: 4435-4443
[Abstract]
[Full Text]
-
Frahm, N., Korber, B. T., Adams, C. M., Szinger, J. J., Draenert, R., Addo, M. M., Feeney, M. E., Yusim, K., Sango, K., Brown, N. V., SenGupta, D., Piechocka-Trocha, A., Simonis, T., Marincola, F. M., Wurcel, A. G., Stone, D. R., Russell, C. J., Adolf, P., Cohen, D., Roach, T., StJohn, A., Khatri, A., Davis, K., Mullins, J., Goulder, P. J. R., Walker, B. D., Brander, C.
(2004). Consistent Cytotoxic-T-Lymphocyte Targeting of Immunodominant Regions in Human Immunodeficiency Virus across Multiple Ethnicities. J. Virol.
78: 2187-2200
[Abstract]
[Full Text]
-
Lore, K., Betts, M. R., Brenchley, J. M., Kuruppu, J., Khojasteh, S., Perfetto, S., Roederer, M., Seder, R. A., Koup, R. A.
(2003). Toll-Like Receptor Ligands Modulate Dendritic Cells to Augment Cytomegalovirus- and HIV-1-Specific T Cell Responses. J. Immunol.
171: 4320-4328
[Abstract]
[Full Text]
-
Tritel, M., Stoddard, A. M., Flynn, B. J., Darrah, P. A., Wu, C.-y., Wille, U., Shah, J. A., Huang, Y., Xu, L., Betts, M. R., Nabel, G. J., Seder, R. A.
(2003). Prime-Boost Vaccination with HIV-1 Gag Protein and Cytosine Phosphate Guanosine Oligodeoxynucleotide, Followed by Adenovirus, Induces Sustained and Robust Humoral and Cellular Immune Responses. J. Immunol.
171: 2538-2547
[Abstract]
[Full Text]
-
Migueles, S. A., Laborico, A. C., Imamichi, H., Shupert, W. L., Royce, C., McLaughlin, M., Ehler, L., Metcalf, J., Liu, S., Hallahan, C. W., Connors, M.
(2003). The Differential Ability of HLA B*5701+ Long-Term Nonprogressors and Progressors To Restrict Human Immunodeficiency Virus Replication Is Not Caused by Loss of Recognition of Autologous Viral gag Sequences. J. Virol.
77: 6889-6898
[Abstract]
[Full Text]
-
Shacklett, B. L., Cox, C. A., Sandberg, J. K., Stollman, N. H., Jacobson, M. A., Nixon, D. F.
(2003). Trafficking of Human Immunodeficiency Virus Type 1-Specific CD8+ T Cells to Gut-Associated Lymphoid Tissue during Chronic Infection. J. Virol.
77: 5621-5631
[Abstract]
[Full Text]
-
Terajima, M., Cruz, J., Raines, G., Kilpatrick, E. D., Kennedy, J. S., Rothman, A. L., Ennis, F. A.
(2003). Quantitation of CD8+ T Cell Responses to Newly Identified HLA-A*0201-restricted T Cell Epitopes Conserved Among Vaccinia and Variola (Smallpox) Viruses. JEM
197: 927-932
[Abstract]
[Full Text]
-
Brenchley, J. M., Karandikar, N. J., Betts, M. R., Ambrozak, D. R., Hill, B. J., Crotty, L. E., Casazza, J. P., Kuruppu, J., Migueles, S. A., Connors, M., Roederer, M., Douek, D. C., Koup, R. A.
(2003). Expression of CD57 defines replicative senescence and antigen-induced apoptotic death of CD8+ T cells. Blood
101: 2711-2720
[Abstract]
[Full Text]
-
Addo, M. M., Yu, X. G., Rathod, A., Cohen, D., Eldridge, R. L., Strick, D., Johnston, M. N., Corcoran, C., Wurcel, A. G., Fitzpatrick, C. A., Feeney, M. E., Rodriguez, W. R., Basgoz, N., Draenert, R., Stone, D. R., Brander, C., Goulder, P. J. R., Rosenberg, E. S., Altfeld, M., Walker, B. D.
(2003). Comprehensive Epitope Analysis of Human Immunodeficiency Virus Type 1 (HIV-1)-Specific T-Cell Responses Directed against the Entire Expressed HIV-1 Genome Demonstrate Broadly Directed Responses, but No Correlation to Viral Load. J. Virol.
77: 2081-2092
[Abstract]
[Full Text]
-
Jin, X., Gao, X., Ramanathan, M. Jr., Deschenes, G. R., Nelson, G. W., O'Brien, S. J., Goedert, J. J., Ho, D. D., O'Brien, T. R., Carrington, M.
(2002). Human Immunodeficiency Virus Type 1 (HIV-1)-Specific CD8+-T-Cell Responses for Groups of HIV-1-Infected Individuals with Different HLA-B*35 Genotypes. J. Virol.
76: 12603-12610
[Abstract]
[Full Text]
-
Hel, Z., Nacsa, J., Tryniszewska, E., Tsai, W.-P., Parks, R. W., Montefiori, D. C., Felber, B. K., Tartaglia, J., Pavlakis, G. N., Franchini, G.
(2002). Containment of Simian Immunodeficiency Virus Infection in Vaccinated Macaques: Correlation with the Magnitude of Virus-Specific Pre- and Postchallenge CD4+ and CD8+ T Cell Responses. J. Immunol.
169: 4778-4787
[Abstract]
[Full Text]
-
Vogel, T. U., Horton, H., Fuller, D. H., Carter, D. K., Vielhuber, K., O'Connor, D. H., Shipley, T., Fuller, J., Sutter, G., Erfle, V., Wilson, N., Picker, L. J., Watkins, D. I.
(2002). Differences Between T Cell Epitopes Recognized After Immunization and After Infection. J. Immunol.
169: 4511-4521
[Abstract]
[Full Text]
-
Chen, W., Bennink, J. R., Morton, P. A., Yewdell, J. W.
(2002). Mice Deficient in Perforin, CD4+ T Cells, or CD28-Mediated Signaling Maintain the Typical Immunodominance Hierarchies of CD8+ T-Cell Responses to Influenza Virus. J. Virol.
76: 10332-10337
[Abstract]
[Full Text]
-
Lauer, G. M., Ouchi, K., Chung, R. T., Nguyen, T. N., Day, C. L., Purkis, D. R., Reiser, M., Kim, A. Y., Lucas, M., Klenerman, P., Walker, B. D.
(2002). Comprehensive Analysis of CD8+-T-Cell Responses against Hepatitis C Virus Reveals Multiple Unpredicted Specificities. J. Virol.
76: 6104-6113
[Abstract]
[Full Text]
-
Currier, J. R., deSouza, M., Chanbancherd, P., Bernstein, W., Birx, D. L., Cox, J. H.
(2002). Comprehensive Screening for Human Immunodeficiency Virus Type 1 Subtype-Specific CD8 Cytotoxic T Lymphocytes and Definition of Degenerate Epitopes Restricted by HLA-A0207 and -CW0304 Alleles. J. Virol.
76: 4971-4986
[Abstract]
[Full Text]
-
Douek, D. C., Betts, M. R., Brenchley, J. M., Hill, B. J., Ambrozak, D. R., Ngai, K.-L., Karandikar, N. J., Casazza, J. P., Koup, R. A.
(2002). A Novel Approach to the Analysis of Specificity, Clonality, and Frequency of HIV-Specific T Cell Responses Reveals a Potential Mechanism for Control of Viral Escape. J. Immunol.
168: 3099-3104
[Abstract]
[Full Text]
-
Boon, A. C. M., de Mutsert, G., Graus, Y. M. F., Fouchier, R. A. M., Sintnicolaas, K., Osterhaus, A. D. M. E., Rimmelzwaan, G. F.
(2002). The Magnitude and Specificity of Influenza A Virus-Specific Cytotoxic T-Lymphocyte Responses in Humans Is Related to HLA-A and -B Phenotype. J. Virol.
76: 582-590
[Abstract]
[Full Text]
-
Betts, M. R., Ambrozak, D. R., Douek, D. C., Bonhoeffer, S., Brenchley, J. M., Casazza, J. P., Koup, R. A., Picker, L. J.
(2001). Analysis of Total Human Immunodeficiency Virus (HIV)-Specific CD4+ and CD8+ T-Cell Responses: Relationship to Viral Load in Untreated HIV Infection. J. Virol.
75: 11983-11991
[Abstract]
[Full Text]
-
Ortiz, G. M., Wellons, M., Brancato, J., Vo, H. T. T., Zinn, R. L., Clarkson, D. E., Van Loon, K., Bonhoeffer, S., Miralles, G. D., Montefiori, D., Bartlett, J. A., Nixon, D. F.
(2001). Structured antiretroviral treatment interruptions in chronically HIV-1-infected subjects. Proc. Natl. Acad. Sci. USA
10.1073/pnas.221452198v1
[Abstract]
[Full Text]
-
Lieberman, J., Shankar, P., Manjunath, N., Andersson, J.
(2001). Dressed to kill? A review of why antiviral CD8 T lymphocytes fail to prevent progressive immunodeficiency in HIV-1 infection. Blood
98: 1667-1677
[Abstract]
[Full Text]
-
Day, C. L., Shea, A. K., Altfeld, M. A., Olson, D. P., Buchbinder, S. P., Hecht, F. M., Rosenberg, E. S., Walker, B. D., Kalams, S. A.
(2001). Relative Dominance of Epitope-Specific Cytotoxic T-Lymphocyte Responses in Human Immunodeficiency Virus Type 1-Infected Persons with Shared HLA Alleles. J. Virol.
75: 6279-6291
[Abstract]
[Full Text]
-
Casazza, J. P., Betts, M. R., Picker, L. J., Koup, R. A.
(2001). Decay Kinetics of Human Immunodeficiency Virus-Specific CD8+ T Cells in Peripheral Blood after Initiation of Highly Active Antiretroviral Therapy. J. Virol.
75: 6508-6516
[Abstract]
[Full Text]
-
Addo, M. M., Altfeld, M., Rosenberg, E. S., Eldridge, R. L., Philips, M. N., Habeeb, K., Khatri, A., Brander, C., Robbins, G. K., Mazzara, G. P., Goulder, P. J. R., Walker, B. D., the HIV Controller Study Collaboration,
(2001). The HIV-1 regulatory proteins Tat and Rev are frequently targeted by cytotoxic T lymphocytes derived from HIV-1-infected individuals. Proc. Natl. Acad. Sci. USA
98: 1781-1786
[Abstract]
[Full Text]
-
Goulder, P. J.R., Altfeld, M. A., Rosenberg, E. S., Nguyen, T., Tang, Y., Eldridge, R. L., Addo, M. M., He, S., Muckerjee, J. S., Phillips, M. N., Bunce, M., Kalams, S. A., Sekaly, R. P., Walker, B. D., Brander, C.
(2001). Substantial Differences in Specificity of HIV-Specific Cytotoxic T Cells in Acute and Chronic HIV Infection. JEM
193: 181-194
[Abstract]
[Full Text]
-
Goulder, P. J.R., Tang, Y., Brander, C., Betts, M. R., Altfeld, M., Annamalai, K., Trocha, A., He, S., Rosenberg, E. S., Ogg, G., O'Callaghan, C. A., Kalams, S. A., McKinney, R. E. Jr., Mayer, K., Koup, R. A., Pelton, S. I., Burchett, S. K., McIntosh, K., Walker, B. D.
(2000). Functionally Inert HIV-Specific Cytotoxic T Lymphocytes Do Not Play a Major Role in Chronically Infected Adults and Children. JEM
192: 1819-1832
[Abstract]
[Full Text]
-
Ortiz, G. M., Wellons, M., Brancato, J., Vo, H. T. T., Zinn, R. L., Clarkson, D. E., Van Loon, K., Bonhoeffer, S., Miralles, G. D., Montefiori, D., Bartlett, J. A., Nixon, D. F.
(2001). Structured antiretroviral treatment interruptions in chronically HIV-1-infected subjects. Proc. Natl. Acad. Sci. USA
98: 13288-13293
[Abstract]
[Full Text]