Previous Article | Next Article 
Journal of Virology, November 1998, p. 9034-9044, Vol. 72, No. 11
0022-538X/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Importance of Basic Residues in the Nucleocapsid
Sequence for Retrovirus Gag Assembly and Complementation
Rescue
J. Bradford
Bowzard,1
Robert P.
Bennett,1,
Neel K.
Krishna,1,
Sandra M.
Ernst,2
Alan
Rein,2 and
John W.
Wills1,*
Department of Microbiology and Immunology,
The Pennsylvania State University College of Medicine, Hershey,
Pennsylvania 17033,1 and
ABL-Basic
Research Program, NCI-Frederick Cancer Research and Development
Center, Frederick, Maryland 217022
Received 11 May 1998/Accepted 4 August 1998
The Gag proteins of Rous sarcoma virus (RSV) and human
immunodeficiency virus (HIV) contain small interaction (I) domains within their nucleocapsid (NC) sequences. These overlap the zinc finger
motifs and function to provide the proper density to viral particles.
There are two zinc fingers and at least two I domains within these Gag
proteins. To more thoroughly characterize the important sequence
features and properties of I domains, we analyzed Gag proteins that
contain one or no zinc finger motifs. Chimeric proteins containing the
amino-terminal half of RSV Gag and various portions of the carboxy
terminus of murine leukemia virus (MLV) (containing one zinc finger)
Gag had only one I domain, whereas similar chimeras with human foamy
virus (HFV) (containing no zinc fingers) Gag had at least two.
Mutational analysis of the MLV NC sequence and inspection of I domain
sequences within the zinc-fingerless C terminus of HFV Gag suggested
that clusters of basic residues, but not the zinc finger motif residues
themselves, are required for the formation of particles of proper
density. In support of this, a simple string of strongly basic residues
was found to be able to substitute for the RSV I domains. We also
explored the possibility that differences in I domains (e.g., their
number) account for differences in the ability of Gag proteins to be
rescued into particles when they are unable to bind to membranes.
Previously published experiments have shown that such membrane-binding
mutants of RSV and HIV (two I domains) can be rescued but that those of MLV (one I domain) cannot. Complementation rescue experiments with
RSV-MLV chimeras now map this difference to the NC sequence of MLV.
Importantly, the same RSV-MLV chimeras could be rescued by
complementation when the block to budding was after, rather than
before, transport to the membrane. These results suggest that MLV Gag
molecules begin to interact at a much later time after synthesis than
those of RSV and HIV.
*
Corresponding author. Mailing address: Department of
Microbiology and Immunology, Pennsylvania State University College of Medicine, 500 University Dr., P.O. Box 850, Hershey, PA 17033. Phone:
(717) 531-3528. Fax: (717) 531-6522. E-mail: jwills{at}psu.edu.

Present address: Invitrogen Corporation, Carlsbad, CA 92121.

Present address: Department of Molecular Biology, The Scripps
Research Institute, La Jolla, CA 92037.
Journal of Virology, November 1998, p. 9034-9044, Vol. 72, No. 11
0022-538X/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
This article has been cited by other articles:
-
Hogue, I. B., Hoppe, A., Ono, A.
(2009). Quantitative Fluorescence Resonance Energy Transfer Microscopy Analysis of the Human Immunodeficiency Virus Type 1 Gag-Gag Interaction: Relative Contributions of the CA and NC Domains and Membrane Binding. J. Virol.
83: 7322-7336
[Abstract]
[Full Text]
-
Didierlaurent, L., Houzet, L., Morichaud, Z., Darlix, J.-L., Mougel, M.
(2008). The conserved N-terminal basic residues and zinc-finger motifs of HIV-1 nucleocapsid restrict the viral cDNA synthesis during virus formation and maturation. Nucleic Acids Res
36: 4745-4753
[Abstract]
[Full Text]
-
Larsen, L. S. Z., Beliakova-Bethell, N., Bilanchone, V., Zhang, M., Lamsa, A., DaSilva, R., Hatfield, G. W., Nagashima, K., Sandmeyer, S.
(2008). Ty3 Nucleocapsid Controls Localization of Particle Assembly. J. Virol.
82: 2501-2514
[Abstract]
[Full Text]
-
Popov, S., Popova, E., Inoue, M., Gottlinger, H. G.
(2008). Human Immunodeficiency Virus Type 1 Gag Engages the Bro1 Domain of ALIX/AIP1 through the Nucleocapsid. J. Virol.
82: 1389-1398
[Abstract]
[Full Text]
-
Li, H., Dou, J., Ding, L., Spearman, P.
(2007). Myristoylation Is Required for Human Immunodeficiency Virus Type 1 Gag-Gag Multimerization in Mammalian Cells. J. Virol.
81: 12899-12910
[Abstract]
[Full Text]
-
Burnett, A., Spearman, P.
(2007). APOBEC3G Multimers Are Recruited to the Plasma Membrane for Packaging into Human Immunodeficiency Virus Type 1 Virus-Like Particles in an RNA-Dependent Process Requiring the NC Basic Linker. J. Virol.
81: 5000-5013
[Abstract]
[Full Text]
-
Mannigel, I., Stange, A., Zentgraf, H., Lindemann, D.
(2007). Correct Capsid Assembly Mediated by a Conserved YXXLGL Motif in Prototype Foamy Virus Gag Is Essential for Infectivity and Reverse Transcription of the Viral Genome. J. Virol.
81: 3317-3326
[Abstract]
[Full Text]
-
Lingappa, J. R., Dooher, J. E., Newman, M. A., Kiser, P. K., Klein, K. C.
(2006). Basic Residues in the Nucleocapsid Domain of Gag Are Required for Interaction of HIV-1 Gag with ABCE1 (HP68), a Cellular Protein Important for HIV-1 Capsid Assembly. J. Biol. Chem.
281: 3773-3784
[Abstract]
[Full Text]
-
Alfadhli, A., Dhenub, T. C., Still, A., Barklis, E.
(2005). Analysis of Human Immunodeficiency Virus Type 1 Gag Dimerization-Induced Assembly. J. Virol.
79: 14498-14506
[Abstract]
[Full Text]
-
Ono, A., Waheed, A. A., Joshi, A., Freed, E. O.
(2005). Association of Human Immunodeficiency Virus Type 1 Gag with Membrane Does Not Require Highly Basic Sequences in the Nucleocapsid: Use of a Novel Gag Multimerization Assay. J. Virol.
79: 14131-14140
[Abstract]
[Full Text]
-
Ako-Adjei, D., Johnson, M. C., Vogt, V. M.
(2005). The Retroviral Capsid Domain Dictates Virion Size, Morphology, and Coassembly of Gag into Virus-Like Particles. J. Virol.
79: 13463-13472
[Abstract]
[Full Text]
-
Mark-Danieli, M., Laham, N., Kenan-Eichler, M., Castiel, A., Melamed, D., Landau, M., Bouvier, N. M., Evans, M. J., Bacharach, E.
(2005). Single Point Mutations in the Zinc Finger Motifs of the Human Immunodeficiency Virus Type 1 Nucleocapsid Alter RNA Binding Specificities of the Gag Protein and Enhance Packaging and Infectivity. J. Virol.
79: 7756-7767
[Abstract]
[Full Text]
-
Jern, P., Sperber, G. O., Ahlsen, G., Blomberg, J.
(2005). Sequence Variability, Gene Structure, and Expression of Full-Length Human Endogenous Retrovirus H. J. Virol.
79: 6325-6337
[Abstract]
[Full Text]
-
Lux, A., Beil, C., Majety, M., Barron, S., Gallione, C. J., Kuhn, H.-M., Berg, J. N., Kioschis, P., Marchuk, D. A., Hafner, M.
(2005). Human Retroviral gag- and gag-pol-like Proteins Interact with the Transforming Growth Factor-{beta} Receptor Activin Receptor-like Kinase 1. J. Biol. Chem.
280: 8482-8493
[Abstract]
[Full Text]
-
Muriaux, D., Costes, S., Nagashima, K., Mirro, J., Cho, E., Lockett, S., Rein, A.
(2004). Role of Murine Leukemia Virus Nucleocapsid Protein in Virus Assembly. J. Virol.
78: 12378-12385
[Abstract]
[Full Text]
-
Spidel, J. L., Craven, R. C., Wilson, C. B., Patnaik, A., Wang, H., Mansky, L. M., Wills, J. W.
(2004). Lysines Close to the Rous Sarcoma Virus Late Domain Critical for Budding. J. Virol.
78: 10606-10616
[Abstract]
[Full Text]
-
Lee, E.-G., Linial, M. L.
(2004). Basic Residues of the Retroviral Nucleocapsid Play Different Roles in Gag-Gag and Gag-{Psi} RNA Interactions. J. Virol.
78: 8486-8495
[Abstract]
[Full Text]
-
Derdowski, A., Ding, L., Spearman, P.
(2004). A Novel Fluorescence Resonance Energy Transfer Assay Demonstrates that the Human Immunodeficiency Virus Type 1 Pr55Gag I Domain Mediates Gag-Gag Interactions. J. Virol.
78: 1230-1242
[Abstract]
[Full Text]
-
Wang, S.-W., Noonan, K., Aldovini, A.
(2004). Nucleocapsid-RNA Interactions Are Essential to Structural Stability but Not to Assembly of Retroviruses. J. Virol.
78: 716-723
[Abstract]
[Full Text]
-
Ma, Y. M., Vogt, V. M.
(2004). Nucleic Acid Binding-Induced Gag Dimerization in the Assembly of Rous Sarcoma Virus Particles In Vitro. J. Virol.
78: 52-60
[Abstract]
[Full Text]
-
Andrawiss, M., Takeuchi, Y., Hewlett, L., Collins, M.
(2003). Murine Leukemia Virus Particle Assembly Quantitated by Fluorescence Microscopy: Role of Gag-Gag Interactions and Membrane Association. J. Virol.
77: 11651-11660
[Abstract]
[Full Text]
-
Larson, D. R., Ma, Y. M., Vogt, V. M., Webb, W. W.
(2003). Direct measurement of Gag-Gag interaction during retrovirus assembly with FRET and fluorescence correlation spectroscopy. JCB
162: 1233-1244
[Abstract]
[Full Text]
-
Ott, D. E., Coren, L. V., Chertova, E. N., Gagliardi, T. D., Nagashima, K., Sowder, R. C. II, Poon, D. T. K., Gorelick, R. J.
(2003). Elimination of Protease Activity Restores Efficient Virion Production to a Human Immunodeficiency Virus Type 1 Nucleocapsid Deletion Mutant. J. Virol.
77: 5547-5556
[Abstract]
[Full Text]
-
Lee, E.-g., Alidina, A., May, C., Linial, M. L.
(2003). Importance of Basic Residues in Binding of Rous Sarcoma Virus Nucleocapsid to the RNA Packaging Signal. J. Virol.
77: 2010-2020
[Abstract]
[Full Text]
-
Pettit, S. C., Gulnik, S., Everitt, L., Kaplan, A. H.
(2002). The Dimer Interfaces of Protease and Extra-Protease Domains Influence the Activation of Protease and the Specificity of GagPol Cleavage. J. Virol.
77: 366-374
[Abstract]
[Full Text]
-
Fu, W., Hu, W.-S.
(2002). Functional Replacement of Nucleocapsid Flanking Regions by Heterologous Counterparts with Divergent Primary Sequences: Effects of Chimeric Nucleocapsid on the Retroviral Replication Cycle. J. Virol.
77: 754-761
[Abstract]
[Full Text]
-
Wang, S.-W., Aldovini, A.
(2002). RNA Incorporation Is Critical for Retroviral Particle Integrity after Cell Membrane Assembly of Gag Complexes. J. Virol.
76: 11853-11865
[Abstract]
[Full Text]
-
Muriaux, D., Mirro, J., Nagashima, K., Harvin, D., Rein, A.
(2002). Murine Leukemia Virus Nucleocapsid Mutant Particles Lacking Viral RNA Encapsidate Ribosomes. J. Virol.
76: 11405-11413
[Abstract]
[Full Text]
-
Ma, Y. M., Vogt, V. M.
(2002). Rous Sarcoma Virus Gag Protein-Oligonucleotide Interaction Suggests a Critical Role for Protein Dimer Formation in Assembly. J. Virol.
76: 5452-5462
[Abstract]
[Full Text]
-
Khorchid, A., Halwani, R., Wainberg, M. A., Kleiman, L.
(2002). Role of RNA in Facilitating Gag/Gag-Pol Interaction. J. Virol.
76: 4131-4137
[Abstract]
[Full Text]
-
Scheifele, L. Z., Garbitt, R. A., Rhoads, J. D., Parent, L. J.
(2002). Nuclear entry and CRM1-dependent nuclear export of the Rous sarcoma virus Gag polyprotein. Proc. Natl. Acad. Sci. USA
99: 3944-3949
[Abstract]
[Full Text]
-
Nakayashiki, H., Matsuo, H., Chuma, I., Ikeda, K., Betsuyaku, S., Kusaba, M., Tosa, Y., Mayama, S.
(2001). Pyret, a Ty3/Gypsy retrotransposon in Magnaporthe grisea contains an extra domain between the nucleocapsid and protease domains. Nucleic Acids Res
29: 4106-4113
[Abstract]
[Full Text]
-
Shigemoto, K., Brennan, J., Walls, E., Watson, C. J., Stott, D., Rigby, P. W. J., Reith, A. D.
(2001). Identification and characterisation of a developmentally regulated mammalian gene that utilises -1 programmed ribosomal frameshifting. Nucleic Acids Res
29: 4079-4088
[Abstract]
[Full Text]
-
Eastman, S. W., Linial, M. L.
(2001). Identification of a Conserved Residue of Foamy Virus Gag Required for Intracellular Capsid Assembly. J. Virol.
75: 6857-6864
[Abstract]
[Full Text]
-
Krishna, N. K., Wills, J. W.
(2001). Insertion of Capsid Proteins from Nonenveloped Viruses into the Retroviral Budding Pathway. J. Virol.
75: 6527-6536
[Abstract]
[Full Text]
-
Tobaly-Tapiero, J., Bittoun, P., Giron, M.-L., Neves, M., Koken, M., Saïb, A., de Thé, H.
(2001). Human Foamy Virus Capsid Formation Requires an Interaction Domain in the N Terminus of Gag. J. Virol.
75: 4367-4375
[Abstract]
[Full Text]
-
Muriaux, D., Mirro, J., Harvin, D., Rein, A.
(2001). RNA is a structural element in retrovirus particles. Proc. Natl. Acad. Sci. USA
98: 5246-5251
[Abstract]
[Full Text]
-
Gonsky, J., Bacharach, E., Goff, S. P.
(2001). Identification of Residues of the Moloney Murine Leukemia Virus Nucleocapsid Critical for Viral DNA Synthesis In Vivo. J. Virol.
75: 2616-2626
[Abstract]
[Full Text]
-
Yu, F., Joshi, S. M., Ma, Y. M., Kingston, R. L., Simon, M. N., Vogt, V. M.
(2001). Characterization of Rous Sarcoma Virus Gag Particles Assembled In Vitro. J. Virol.
75: 2753-2764
[Abstract]
[Full Text]
-
Yovandich, J. L., Chertova, E. N., Kane, B. P., Gagliardi, T. D., Bess, J. W. Jr., Sowder, R. C. II, Henderson, L. E., Gorelick, R. J.
(2001). Alteration of Zinc-Binding Residues of Simian Immunodeficiency Virus p8NC Results in Subtle Differences in Gag Processing and Virion Maturation Associated with Degradative Loss of Mutant NC. J. Virol.
75: 115-124
[Abstract]
[Full Text]
-
Bowzard, J. B., Visalli, R. J., Wilson, C. B., Loomis, J. S., Callahan, E. M., Courtney, R. J., Wills, J. W.
(2000). Membrane Targeting Properties of a Herpesvirus Tegument Protein-Retrovirus Gag Chimera. J. Virol.
74: 8692-8699
[Abstract]
[Full Text]
-
Sandefur, S., Smith, R. M., Varthakavi, V., Spearman, P.
(2000). Mapping and Characterization of the N-Terminal I Domain of Human Immunodeficiency Virus Type 1 Pr55Gag. J. Virol.
74: 7238-7249
[Abstract]
[Full Text]
-
Cimarelli, A., Luban, J.
(2000). Human Immunodeficiency Virus Type 1 Virion Density Is Not Determined by Nucleocapsid Basic Residues. J. Virol.
74: 6734-6740
[Abstract]
[Full Text]
-
Ono, A., Demirov, D., Freed, E. O.
(2000). Relationship between Human Immunodeficiency Virus Type 1 Gag Multimerization and Membrane Binding. J. Virol.
74: 5142-5150
[Abstract]
[Full Text]
-
Cimarelli, A., Sandin, S., Höglund, S., Luban, J.
(2000). Basic Residues in Human Immunodeficiency Virus Type 1 Nucleocapsid Promote Virion Assembly via Interaction with RNA. J. Virol.
74: 3046-3057
[Abstract]
[Full Text]
-
Buchschacher, G. L. Jr., Yu, L., Murai, F., Friedmann, T., Miyanohara, A.
(1999). Association of Murine Leukemia Virus Pol with Virions, Independent of Gag-Pol Expression. J. Virol.
73: 9632-9637
[Abstract]
[Full Text]
-
Lee, E.-g., Yeo, A., Kraemer, B., Wickens, M., Linial, M. L.
(1999). The Gag Domains Required for Avian Retroviral RNA Encapsidation Determined by Using Two Independent Assays. J. Virol.
73: 6282-6292
[Abstract]
[Full Text]
-
Lee, Y.-M., Liu, B., Yu, X.-F.
(1999). Formation of Virus Assembly Intermediate Complexes in the Cytoplasm by Wild-Type and Assembly-Defective Mutant Human Immunodeficiency Virus Type 1 and Their Association with Membranes. J. Virol.
73: 5654-5662
[Abstract]
[Full Text]
-
Dettenhofer, M., Yu, X.-F.
(1999). Proline Residues in Human Immunodeficiency Virus Type 1 p6Gag Exert a Cell Type-Dependent Effect on Viral Replication and Virion Incorporation of Pol Proteins. J. Virol.
73: 4696-4704
[Abstract]
[Full Text]
-
Cen, S., Huang, Y., Khorchid, A., Darlix, J.-L., Wainberg, M. A., Kleiman, L.
(1999). The Role of Pr55gag in the Annealing of tRNA3Lys to Human Immunodeficiency Virus Type 1 Genomic RNA. J. Virol.
73: 4485-4488
[Abstract]
[Full Text]
-
Liu, B., Dai, R., Tian, C.-J., Dawson, L., Gorelick, R., Yu, X.-F.
(1999). Interaction of the Human Immunodeficiency Virus Type 1 Nucleocapsid with Actin. J. Virol.
73: 2901-2908
[Abstract]
[Full Text]
-
Bennett, R. P., Wills, J. W.
(1999). Conditions for Copackaging Rous Sarcoma Virus and Murine Leukemia Virus Gag Proteins during Retroviral Budding. J. Virol.
73: 2045-2051
[Abstract]
[Full Text]